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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

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BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45801 8jze:L (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45802 8jze:L (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45803 8jze:L (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45804 8jze:L (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45805 8jze:L (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45806 8jze:L (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45807 8jze:L (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45808 8jze:L (2.99) BS19 CLA N/A GO:0009765 ... N/A 38319970
    45809 8jze:M (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45810 8jze:M (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45811 8jze:M (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45812 8jze:M (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45813 8jze:M (2.99) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45814 8jze:M (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45815 8jze:M (2.99) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45816 8jze:M (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45817 8jze:M (2.99) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45818 8jze:M (2.99) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45819 8jze:N (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45820 8jze:N (2.99) BS05 CLA N/A GO:0009765 ... N/A 38319970
    45821 8jze:N (2.99) BS06 CLA N/A GO:0009765 ... N/A 38319970
    45822 8jze:N (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45823 8jze:N (2.99) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45824 8jze:N (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45825 8jze:O (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45826 8jze:O (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45827 8jze:O (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45828 8jze:O (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45829 8jze:O (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45830 8jze:O (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45831 8jze:P (2.99) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45832 8jze:P (2.99) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45833 8jze:P (2.99) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45834 8jze:P (2.99) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45835 8jze:P (2.99) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45836 8jze:P (2.99) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45837 8jze:P (2.99) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45838 8jze:a (2.99) BS01 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45839 8jze:a (2.99) BS02 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45840 8jze:a (2.99) BS03 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45841 8jze:a (2.99) BS04 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45842 8jze:a (2.99) BS05 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45843 8jze:a (2.99) BS06 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45844 8jze:a (2.99) BS07 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45845 8jze:a (2.99) BS08 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45846 8jze:a (2.99) BS09 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45847 8jze:a (2.99) BS10 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45848 8jze:a (2.99) BS11 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45849 8jze:a (2.99) BS12 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45850 8jze:a (2.99) BS13 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45851 8jze:a (2.99) BS14 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45852 8jze:a (2.99) BS15 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45853 8jze:a (2.99) BS16 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45854 8jze:a (2.99) BS17 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45855 8jze:a (2.99) BS18 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45856 8jze:a (2.99) BS19 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45857 8jze:a (2.99) BS20 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45858 8jze:a (2.99) BS21 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45859 8jze:a (2.99) BS22 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45860 8jze:a (2.99) BS23 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45861 8jze:a (2.99) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45862 8jze:a (2.99) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45863 8jze:a (2.99) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45864 8jze:a (2.99) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45865 8jze:a (2.99) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45866 8jze:a (2.99) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45867 8jze:a (2.99) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45868 8jze:a (2.99) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45869 8jze:a (2.99) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45870 8jze:a (2.99) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45871 8jze:a (2.99) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45872 8jze:a (2.99) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45873 8jze:a (2.99) BS38 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45874 8jze:a (2.99) BS39 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45875 8jze:a (2.99) BS40 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45876 8jze:a (2.99) BS41 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45877 8jze:a (2.99) BS42 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2S9 38319970
    45878 8jze:b (2.99) BS01 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45879 8jze:b (2.99) BS02 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45880 8jze:b (2.99) BS03 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45881 8jze:b (2.99) BS04 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45882 8jze:b (2.99) BS05 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45883 8jze:b (2.99) BS06 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45884 8jze:b (2.99) BS07 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45885 8jze:b (2.99) BS08 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45886 8jze:b (2.99) BS09 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45887 8jze:b (2.99) BS10 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45888 8jze:b (2.99) BS12 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45889 8jze:b (2.99) BS13 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45890 8jze:b (2.99) BS14 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45891 8jze:b (2.99) BS15 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45892 8jze:b (2.99) BS16 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45893 8jze:b (2.99) BS17 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45894 8jze:b (2.99) BS18 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45895 8jze:b (2.99) BS19 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45896 8jze:b (2.99) BS20 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45897 8jze:b (2.99) BS21 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45898 8jze:b (2.99) BS22 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45899 8jze:b (2.99) BS23 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45900 8jze:b (2.99) BS24 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45901 8jze:b (2.99) BS25 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45902 8jze:b (2.99) BS26 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45903 8jze:b (2.99) BS27 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45904 8jze:b (2.99) BS28 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45905 8jze:b (2.99) BS29 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45906 8jze:b (2.99) BS30 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45907 8jze:b (2.99) BS31 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45908 8jze:b (2.99) BS32 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45909 8jze:b (2.99) BS33 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45910 8jze:b (2.99) BS34 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45911 8jze:b (2.99) BS35 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45912 8jze:b (2.99) BS36 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45913 8jze:b (2.99) BS37 CLA 1.97.1.12 GO:0009507 ... A0A0A0N2P0 38319970
    45914 8jze:f (2.99) BS01 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45915 8jze:f (2.99) BS02 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45916 8jze:f (2.99) BS03 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45917 8jze:f (2.99) BS04 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45918 8jze:f (2.99) BS05 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45919 8jze:f (2.99) BS06 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45920 8jze:f (2.99) BS07 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45921 8jze:f (2.99) BS08 CLA ? GO:0009522 ... A0A812QHR9 38319970
    45922 8jze:h (2.99) BS01 CLA ? N/A A0A812Q823 38319970
    45923 8jze:h (2.99) BS02 CLA ? N/A A0A812Q823 38319970
    45924 8jze:h (2.99) BS04 CLA ? N/A A0A812Q823 38319970
    45925 8jze:h (2.99) BS06 CLA ? N/A A0A812Q823 38319970
    45926 8jze:h (2.99) BS07 CLA ? N/A A0A812Q823 38319970
    45927 8jze:i (2.99) BS01 CLA ? GO:0009522 ... A0A812IJ75 38319970
    45928 8jze:i (2.99) BS02 CLA ? GO:0009522 ... A0A812IJ75 38319970
    45929 8jze:j (2.99) BS01 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45930 8jze:j (2.99) BS02 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45931 8jze:j (2.99) BS03 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45932 8jze:j (2.99) BS04 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45933 8jze:j (2.99) BS06 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45934 8jze:j (2.99) BS07 CLA ? GO:0009522 ... A0A812LLR4 38319970
    45935 8jze:l (2.99) BS01 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45936 8jze:l (2.99) BS02 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45937 8jze:l (2.99) BS03 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45938 8jze:l (2.99) BS04 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45939 8jze:l (2.99) BS05 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45940 8jze:l (2.99) BS06 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45941 8jze:l (2.99) BS07 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45942 8jze:l (2.99) BS08 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45943 8jze:l (2.99) BS09 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45944 8jze:l (2.99) BS10 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45945 8jze:l (2.99) BS11 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45946 8jze:l (2.99) BS12 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45947 8jze:l (2.99) BS13 CLA ? GO:0009522 ... A0A812S6M2 38319970
    45948 8jze:m (2.99) BS01 CLA ? N/A A0A812M556 38319970
    45949 8jze:m (2.99) BS02 CLA ? N/A A0A812M556 38319970
    45950 8jzf:A (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45951 8jzf:A (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45952 8jzf:A (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45953 8jzf:A (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45954 8jzf:A (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45955 8jzf:A (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45956 8jzf:A (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45957 8jzf:A (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45958 8jzf:A (2.7) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45959 8jzf:A (2.7) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45960 8jzf:A (2.7) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45961 8jzf:B (2.7) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45962 8jzf:B (2.7) BS02 CLA N/A GO:0009765 ... N/A 38319970
    45963 8jzf:B (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45964 8jzf:B (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45965 8jzf:B (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45966 8jzf:B (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45967 8jzf:B (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45968 8jzf:B (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45969 8jzf:B (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45970 8jzf:B (2.7) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45971 8jzf:B (2.7) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45972 8jzf:D (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45973 8jzf:D (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45974 8jzf:D (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45975 8jzf:D (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45976 8jzf:D (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45977 8jzf:D (2.7) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45978 8jzf:D (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45979 8jzf:F (2.7) BS06 CLA N/A GO:0009765 ... N/A 38319970
    45980 8jzf:F (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45981 8jzf:F (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45982 8jzf:F (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45983 8jzf:F (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45984 8jzf:F (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45985 8jzf:F (2.7) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45986 8jzf:G (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45987 8jzf:G (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45988 8jzf:G (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45989 8jzf:G (2.7) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45990 8jzf:G (2.7) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45991 8jzf:G (2.7) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45992 8jzf:G (2.7) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45993 8jzf:G (2.7) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45994 8jzf:G (2.7) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45995 8jzf:G (2.7) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45996 8jzf:H (2.7) BS04 CLA N/A GO:0009765 ... N/A 38319970
    45997 8jzf:H (2.7) BS05 CLA N/A GO:0009765 ... N/A 38319970
    45998 8jzf:H (2.7) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45999 8jzf:H (2.7) BS08 CLA N/A GO:0009765 ... N/A 38319970
    46000 8jzf:H (2.7) BS09 CLA N/A GO:0009765 ... N/A 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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