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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45401 8jjr:l (2.8) BS10 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45402 8jjr:l (2.8) BS11 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45403 8jjr:l (2.8) BS12 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45404 8jjr:l (2.8) BS13 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45405 8jjr:l (2.8) BS14 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45406 8jjr:m (2.8) BS01 CLA N/A N/A A0AA36N6D6 38493166
    45407 8jjr:m (2.8) BS02 CLA N/A N/A A0AA36N6D6 38493166
    45408 8jjr:r (2.8) BS01 CLA N/A N/A A0AA36JF81 38493166
    45409 8jjr:r (2.8) BS02 CLA N/A N/A A0AA36JF81 38493166
    45410 8jjr:r (2.8) BS03 CLA N/A N/A A0AA36JF81 38493166
    45411 8jjr:r (2.8) BS05 CLA N/A N/A A0AA36JF81 38493166
    45412 8jjr:r (2.8) BS06 CLA N/A N/A A0AA36JF81 38493166
    45413 8jp3:A (2.73) BS08 CLA ? GO:0009416 ... B8BS67 39030906
    45414 8jp3:A (2.73) BS09 CLA ? GO:0009416 ... B8BS67 39030906
    45415 8jp3:A (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    45416 8jp3:A (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    45417 8jp3:A (2.73) BS14 CLA ? GO:0009416 ... B8BS67 39030906
    45418 8jp3:A (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    45419 8jp3:A (2.73) BS17 CLA ? GO:0009416 ... B8BS67 39030906
    45420 8jp3:A (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    45421 8jp3:A (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    45422 8jp3:B (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    45423 8jp3:B (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    45424 8jp3:B (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    45425 8jp3:B (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    45426 8jp3:B (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    45427 8jp3:B (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    45428 8jp3:B (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    45429 8jp3:B (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    45430 8jp3:B (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    45431 8jp3:C (2.73) BS02 CLA ? GO:0009416 ... B8BS67 39030906
    45432 8jp3:C (2.73) BS10 CLA ? GO:0009416 ... B8BS67 39030906
    45433 8jp3:C (2.73) BS11 CLA ? GO:0009416 ... B8BS67 39030906
    45434 8jp3:C (2.73) BS13 CLA ? GO:0009416 ... B8BS67 39030906
    45435 8jp3:C (2.73) BS15 CLA ? GO:0009416 ... B8BS67 39030906
    45436 8jp3:C (2.73) BS16 CLA ? GO:0009416 ... B8BS67 39030906
    45437 8jp3:C (2.73) BS18 CLA ? GO:0009416 ... B8BS67 39030906
    45438 8jp3:C (2.73) BS19 CLA ? GO:0009416 ... B8BS67 39030906
    45439 8jp3:C (2.73) BS20 CLA ? GO:0009416 ... B8BS67 39030906
    45440 8jw0:A (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45441 8jw0:A (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45442 8jw0:A (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45443 8jw0:A (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45444 8jw0:A (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45445 8jw0:A (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45446 8jw0:A (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45447 8jw0:A (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45448 8jw0:A (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45449 8jw0:A (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45450 8jw0:A (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45451 8jw0:A (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45452 8jw0:A (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    45453 8jw0:A (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    45454 8jw0:B (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45455 8jw0:B (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45456 8jw0:B (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45457 8jw0:B (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45458 8jw0:B (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45459 8jw0:B (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45460 8jw0:B (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45461 8jw0:B (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45462 8jw0:B (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45463 8jw0:B (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45464 8jw0:B (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45465 8jw0:B (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    45466 8jw0:B (2.9) BS21 CLA N/A GO:0009765 ... N/A 38319970
    45467 8jw0:C (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45468 8jw0:C (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45469 8jw0:C (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45470 8jw0:C (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45471 8jw0:C (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45472 8jw0:C (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45473 8jw0:D (2.9) BS08 CLA ? GO:0009765 ... Q38689 38319970
    45474 8jw0:D (2.9) BS09 CLA ? GO:0009765 ... Q38689 38319970
    45475 8jw0:D (2.9) BS11 CLA ? GO:0009765 ... Q38689 38319970
    45476 8jw0:D (2.9) BS12 CLA ? GO:0009765 ... Q38689 38319970
    45477 8jw0:D (2.9) BS13 CLA ? GO:0009765 ... Q38689 38319970
    45478 8jw0:D (2.9) BS14 CLA ? GO:0009765 ... Q38689 38319970
    45479 8jw0:D (2.9) BS16 CLA ? GO:0009765 ... Q38689 38319970
    45480 8jw0:E (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    45481 8jw0:E (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45482 8jw0:E (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45483 8jw0:E (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45484 8jw0:E (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45485 8jw0:E (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45486 8jw0:E (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45487 8jw0:E (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45488 8jw0:E (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45489 8jw0:F (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45490 8jw0:F (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45491 8jw0:F (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45492 8jw0:F (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45493 8jw0:F (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45494 8jw0:F (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45495 8jw0:F (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45496 8jw0:F (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45497 8jw0:F (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45498 8jw0:G (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45499 8jw0:G (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    45500 8jw0:G (2.9) BS03 CLA N/A GO:0009765 ... N/A 38319970
    45501 8jw0:G (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    45502 8jw0:G (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45503 8jw0:G (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45504 8jw0:G (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45505 8jw0:G (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45506 8jw0:G (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45507 8jw0:G (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45508 8jw0:G (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    45509 8jw0:H (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45510 8jw0:H (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45511 8jw0:H (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45512 8jw0:H (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45513 8jw0:H (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45514 8jw0:H (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45515 8jw0:I (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45516 8jw0:I (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    45517 8jw0:I (2.9) BS04 CLA N/A GO:0009765 ... N/A 38319970
    45518 8jw0:I (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45519 8jw0:I (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45520 8jw0:I (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45521 8jw0:I (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45522 8jw0:I (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45523 8jw0:I (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45524 8jw0:I (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45525 8jw0:I (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45526 8jw0:I (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    45527 8jw0:I (2.9) BS20 CLA N/A GO:0009765 ... N/A 38319970
    45528 8jw0:J (2.9) BS01 CLA N/A GO:0009765 ... N/A 38319970
    45529 8jw0:J (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    45530 8jw0:J (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45531 8jw0:J (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45532 8jw0:J (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45533 8jw0:J (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45534 8jw0:J (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45535 8jw0:J (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45536 8jw0:J (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45537 8jw0:K (2.9) BS02 CLA N/A GO:0009765 ... N/A 38319970
    45538 8jw0:K (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45539 8jw0:K (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45540 8jw0:K (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45541 8jw0:K (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45542 8jw0:K (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45543 8jw0:K (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45544 8jw0:K (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45545 8jw0:K (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45546 8jw0:K (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45547 8jw0:K (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45548 8jw0:K (2.9) BS19 CLA N/A GO:0009765 ... N/A 38319970
    45549 8jw0:L (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45550 8jw0:L (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45551 8jw0:L (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45552 8jw0:L (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45553 8jw0:L (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45554 8jw0:L (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45555 8jw0:L (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45556 8jw0:L (2.9) BS17 CLA N/A GO:0009765 ... N/A 38319970
    45557 8jw0:L (2.9) BS18 CLA N/A GO:0009765 ... N/A 38319970
    45558 8jw0:M (2.9) BS06 CLA N/A GO:0009765 ... N/A 38319970
    45559 8jw0:M (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45560 8jw0:M (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45561 8jw0:M (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45562 8jw0:M (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45563 8jw0:M (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45564 8jw0:M (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45565 8jw0:M (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45566 8jw0:N (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45567 8jw0:N (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45568 8jw0:N (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45569 8jw0:N (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45570 8jw0:N (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45571 8jw0:N (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45572 8jw0:O (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45573 8jw0:O (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45574 8jw0:O (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45575 8jw0:O (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45576 8jw0:O (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45577 8jw0:O (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45578 8jw0:P (2.9) BS01 CLA ? GO:0009765 ... Q38688 38319970
    45579 8jw0:P (2.9) BS08 CLA ? GO:0009765 ... Q38688 38319970
    45580 8jw0:P (2.9) BS09 CLA ? GO:0009765 ... Q38688 38319970
    45581 8jw0:P (2.9) BS11 CLA ? GO:0009765 ... Q38688 38319970
    45582 8jw0:P (2.9) BS13 CLA ? GO:0009765 ... Q38688 38319970
    45583 8jw0:P (2.9) BS14 CLA ? GO:0009765 ... Q38688 38319970
    45584 8jw0:P (2.9) BS16 CLA ? GO:0009765 ... Q38688 38319970
    45585 8jw0:Q (2.9) BS07 CLA N/A GO:0009765 ... N/A 38319970
    45586 8jw0:Q (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45587 8jw0:Q (2.9) BS10 CLA N/A GO:0009765 ... N/A 38319970
    45588 8jw0:Q (2.9) BS12 CLA N/A GO:0009765 ... N/A 38319970
    45589 8jw0:Q (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45590 8jw0:Q (2.9) BS15 CLA N/A GO:0009765 ... N/A 38319970
    45591 8jw0:T (2.9) BS08 CLA N/A GO:0009765 ... N/A 38319970
    45592 8jw0:T (2.9) BS09 CLA N/A GO:0009765 ... N/A 38319970
    45593 8jw0:T (2.9) BS11 CLA N/A GO:0009765 ... N/A 38319970
    45594 8jw0:T (2.9) BS13 CLA N/A GO:0009765 ... N/A 38319970
    45595 8jw0:T (2.9) BS14 CLA N/A GO:0009765 ... N/A 38319970
    45596 8jw0:T (2.9) BS16 CLA N/A GO:0009765 ... N/A 38319970
    45597 8jw0:a (2.9) BS01 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    45598 8jw0:a (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    45599 8jw0:a (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    45600 8jw0:a (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P58309 38319970
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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