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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43401 8ira:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    43402 8ira:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    43403 8ira:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43404 8irb:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43405 8irb:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43406 8irb:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43407 8irb:A (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43408 8irb:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43409 8irb:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43410 8irb:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43411 8irb:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43412 8irb:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43413 8irb:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43414 8irb:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43415 8irb:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43416 8irb:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43417 8irb:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43418 8irb:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43419 8irb:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43420 8irb:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43421 8irb:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43422 8irb:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43423 8irb:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43424 8irb:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43425 8irb:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43426 8irb:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43427 8irb:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43428 8irb:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43429 8irb:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43430 8irb:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43431 8irb:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43432 8irb:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43433 8irb:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43434 8irb:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43435 8irb:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43436 8irb:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43437 8irb:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43438 8irb:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43439 8irb:D (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43440 8irb:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43441 8irb:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43442 8irb:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    43443 8irb:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    43444 8irb:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    43445 8irb:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    43446 8irb:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    43447 8irb:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    43448 8irb:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43449 8irb:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43450 8irb:a (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43451 8irb:a (2.3) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43452 8irb:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43453 8irb:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43454 8irb:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43455 8irb:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43456 8irb:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43457 8irb:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43458 8irb:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43459 8irb:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43460 8irb:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43461 8irb:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43462 8irb:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43463 8irb:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43464 8irb:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43465 8irb:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43466 8irb:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43467 8irb:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43468 8irb:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43469 8irb:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43470 8irb:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43471 8irb:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43472 8irb:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43473 8irb:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43474 8irb:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43475 8irb:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43476 8irb:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43477 8irb:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43478 8irb:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43479 8irb:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43480 8irb:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43481 8irb:d (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43482 8irb:d (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43483 8irb:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43484 8irb:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43485 8irb:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    43486 8irb:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    43487 8irb:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    43488 8irb:h (2.3) BS04 CLA ? GO:0009523 ... P19052 38297122
    43489 8irb:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    43490 8irb:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    43491 8irb:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    43492 8irc:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43493 8irc:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43494 8irc:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43495 8irc:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43496 8irc:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43497 8irc:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43498 8irc:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43499 8irc:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43500 8irc:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43501 8irc:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43502 8irc:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43503 8irc:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43504 8irc:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43505 8irc:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43506 8irc:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43507 8irc:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43508 8irc:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43509 8irc:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43510 8irc:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43511 8irc:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43512 8irc:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43513 8irc:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43514 8irc:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43515 8irc:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43516 8irc:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43517 8irc:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43518 8irc:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43519 8irc:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43520 8irc:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43521 8irc:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43522 8irc:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43523 8irc:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43524 8irc:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43525 8irc:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43526 8irc:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43527 8irc:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43528 8irc:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43529 8irc:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43530 8irc:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43531 8irc:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43532 8irc:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43533 8irc:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43534 8irc:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43535 8irc:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43536 8irc:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43537 8irc:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43538 8irc:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43539 8irc:a (2.25) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43540 8irc:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43541 8irc:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43542 8irc:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43543 8irc:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43544 8irc:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43545 8irc:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43546 8irc:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43547 8irc:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43548 8irc:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43549 8irc:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43550 8irc:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43551 8irc:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43552 8irc:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43553 8irc:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43554 8irc:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43555 8irc:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43556 8irc:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43557 8irc:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43558 8irc:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43559 8irc:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43560 8irc:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43561 8irc:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43562 8irc:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43563 8irc:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43564 8irc:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43565 8irc:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43566 8irc:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43567 8irc:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43568 8irc:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43569 8irc:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43570 8irc:d (2.25) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43571 8irc:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43572 8irc:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43573 8irc:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43574 8irc:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43575 8irc:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43576 8irc:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43577 8irc:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43578 8irc:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43579 8irc:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43580 8irc:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43581 8ird:A (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43582 8ird:A (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43583 8ird:A (2.3) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43584 8ird:A (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43585 8ird:B (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43586 8ird:B (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43587 8ird:B (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43588 8ird:B (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43589 8ird:B (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43590 8ird:B (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43591 8ird:B (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43592 8ird:B (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43593 8ird:B (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43594 8ird:B (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43595 8ird:B (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43596 8ird:B (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43597 8ird:B (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43598 8ird:B (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43599 8ird:B (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43600 8ird:B (2.3) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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