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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34201 7vd5:14 (2.5) BS12 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34202 7vd5:15 (2.5) BS01 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34203 7vd5:15 (2.5) BS03 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34204 7vd5:15 (2.5) BS05 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34205 7vd5:15 (2.5) BS07 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34206 7vd5:15 (2.5) BS08 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34207 7vd5:15 (2.5) BS10 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34208 7vd5:15 (2.5) BS17 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34209 7vd5:16 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34210 7vd5:16 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34211 7vd5:16 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34212 7vd5:16 (2.5) BS09 CLA N/A GO:0009765 ... N/A N/A
    34213 7vd5:16 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34214 7vd5:16 (2.5) BS12 CLA N/A GO:0009765 ... N/A N/A
    34215 7vd5:17 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34216 7vd5:17 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34217 7vd5:17 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34218 7vd5:17 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34219 7vd5:17 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34220 7vd5:17 (2.5) BS18 CLA N/A GO:0009765 ... N/A N/A
    34221 7vd5:17 (2.5) BS19 CLA N/A GO:0009765 ... N/A N/A
    34222 7vd5:18 (2.5) BS04 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34223 7vd5:18 (2.5) BS05 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34224 7vd5:18 (2.5) BS06 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34225 7vd5:18 (2.5) BS07 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34226 7vd5:18 (2.5) BS09 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34227 7vd5:18 (2.5) BS11 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34228 7vd5:18 (2.5) BS12 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34229 7vd5:18 (2.5) BS14 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34230 7vd5:19 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34231 7vd5:19 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34232 7vd5:19 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34233 7vd5:19 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34234 7vd5:19 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34235 7vd5:19 (2.5) BS07 CLA N/A GO:0009765 ... N/A N/A
    34236 7vd5:19 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34237 7vd5:19 (2.5) BS09 CLA N/A GO:0009765 ... N/A N/A
    34238 7vd5:19 (2.5) BS11 CLA N/A GO:0009765 ... N/A N/A
    34239 7vd5:19 (2.5) BS12 CLA N/A GO:0009765 ... N/A N/A
    34240 7vd5:20 (2.5) BS01 CLA N/A N/A N/A N/A
    34241 7vd5:20 (2.5) BS03 CLA N/A N/A N/A N/A
    34242 7vd5:20 (2.5) BS05 CLA N/A N/A N/A N/A
    34243 7vd5:20 (2.5) BS08 CLA N/A N/A N/A N/A
    34244 7vd5:20 (2.5) BS09 CLA N/A N/A N/A N/A
    34245 7vd5:20 (2.5) BS10 CLA N/A N/A N/A N/A
    34246 7vd5:21 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34247 7vd5:21 (2.5) BS02 CLA N/A GO:0009765 ... N/A N/A
    34248 7vd5:21 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34249 7vd5:21 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34250 7vd5:21 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34251 7vd5:21 (2.5) BS07 CLA N/A GO:0009765 ... N/A N/A
    34252 7vd5:21 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34253 7vd5:31 (2.5) BS01 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34254 7vd5:31 (2.5) BS03 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34255 7vd5:31 (2.5) BS05 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34256 7vd5:31 (2.5) BS07 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34257 7vd5:31 (2.5) BS09 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34258 7vd5:31 (2.5) BS16 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34259 7vd5:31 (2.5) BS18 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34260 7vd5:32 (2.5) BS02 CLA N/A GO:0009765 ... N/A N/A
    34261 7vd5:32 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34262 7vd5:32 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34263 7vd5:32 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34264 7vd5:32 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34265 7vd5:32 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34266 7vd5:32 (2.5) BS11 CLA N/A GO:0009765 ... N/A N/A
    34267 7vd5:32 (2.5) BS13 CLA N/A GO:0009765 ... N/A N/A
    34268 7vd5:33 (2.5) BS01 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34269 7vd5:33 (2.5) BS04 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34270 7vd5:33 (2.5) BS06 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34271 7vd5:33 (2.5) BS08 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34272 7vd5:33 (2.5) BS10 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34273 7vd5:33 (2.5) BS11 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34274 7vd5:33 (2.5) BS13 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34275 7vd5:34 (2.5) BS01 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34276 7vd5:34 (2.5) BS03 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34277 7vd5:34 (2.5) BS04 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34278 7vd5:34 (2.5) BS05 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34279 7vd5:34 (2.5) BS07 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34280 7vd5:34 (2.5) BS09 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34281 7vd5:34 (2.5) BS10 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34282 7vd5:34 (2.5) BS12 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34283 7vd5:35 (2.5) BS01 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34284 7vd5:35 (2.5) BS03 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34285 7vd5:35 (2.5) BS05 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34286 7vd5:35 (2.5) BS07 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34287 7vd5:35 (2.5) BS08 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34288 7vd5:35 (2.5) BS10 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34289 7vd5:35 (2.5) BS17 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34290 7vd5:36 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34291 7vd5:36 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34292 7vd5:36 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34293 7vd5:36 (2.5) BS09 CLA N/A GO:0009765 ... N/A N/A
    34294 7vd5:36 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34295 7vd5:36 (2.5) BS12 CLA N/A GO:0009765 ... N/A N/A
    34296 7vd5:37 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34297 7vd5:37 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34298 7vd5:37 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34299 7vd5:37 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34300 7vd5:37 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34301 7vd5:37 (2.5) BS18 CLA N/A GO:0009765 ... N/A N/A
    34302 7vd5:37 (2.5) BS19 CLA N/A GO:0009765 ... N/A N/A
    34303 7vd5:38 (2.5) BS04 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34304 7vd5:38 (2.5) BS05 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34305 7vd5:38 (2.5) BS06 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34306 7vd5:38 (2.5) BS07 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34307 7vd5:38 (2.5) BS09 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34308 7vd5:38 (2.5) BS11 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34309 7vd5:38 (2.5) BS12 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34310 7vd5:38 (2.5) BS14 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34311 7vd5:39 (2.5) BS02 CLA N/A GO:0009765 ... N/A N/A
    34312 7vd5:39 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34313 7vd5:39 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34314 7vd5:39 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34315 7vd5:39 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34316 7vd5:39 (2.5) BS07 CLA N/A GO:0009765 ... N/A N/A
    34317 7vd5:39 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34318 7vd5:39 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34319 7vd5:39 (2.5) BS11 CLA N/A GO:0009765 ... N/A N/A
    34320 7vd5:40 (2.5) BS01 CLA N/A N/A N/A N/A
    34321 7vd5:40 (2.5) BS04 CLA N/A N/A N/A N/A
    34322 7vd5:40 (2.5) BS06 CLA N/A N/A N/A N/A
    34323 7vd5:40 (2.5) BS09 CLA N/A N/A N/A N/A
    34324 7vd5:40 (2.5) BS10 CLA N/A N/A N/A N/A
    34325 7vd5:40 (2.5) BS11 CLA N/A N/A N/A N/A
    34326 7vd5:41 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34327 7vd5:41 (2.5) BS02 CLA N/A GO:0009765 ... N/A N/A
    34328 7vd5:41 (2.5) BS03 CLA N/A GO:0009765 ... N/A N/A
    34329 7vd5:41 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34330 7vd5:41 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34331 7vd5:41 (2.5) BS07 CLA N/A GO:0009765 ... N/A N/A
    34332 7vd5:41 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34333 7vd5:5 (2.5) BS01 CLA N/A N/A N/A N/A
    34334 7vd5:A (2.5) BS04 CLA ? GO:0009055 ... A0A679C261 N/A
    34335 7vd5:A (2.5) BS06 CLA ? GO:0009055 ... A0A679C261 N/A
    34336 7vd5:A (2.5) BS08 CLA ? GO:0009055 ... A0A679C261 N/A
    34337 7vd5:A (2.5) BS09 CLA ? GO:0009055 ... A0A679C261 N/A
    34338 7vd5:A (2.5) BS10 CLA ? GO:0009055 ... A0A679C261 N/A
    34339 7vd5:A (2.5) BS12 CLA ? GO:0009055 ... A0A679C261 N/A
    34340 7vd5:B (2.5) BS01 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34341 7vd5:B (2.5) BS02 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34342 7vd5:B (2.5) BS03 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34343 7vd5:B (2.5) BS04 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34344 7vd5:B (2.5) BS05 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34345 7vd5:B (2.5) BS06 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34346 7vd5:B (2.5) BS07 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34347 7vd5:B (2.5) BS08 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34348 7vd5:B (2.5) BS09 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34349 7vd5:B (2.5) BS10 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34350 7vd5:B (2.5) BS11 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34351 7vd5:B (2.5) BS12 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34352 7vd5:B (2.5) BS13 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34353 7vd5:B (2.5) BS14 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34354 7vd5:B (2.5) BS15 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34355 7vd5:B (2.5) BS16 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34356 7vd5:B (2.5) BS17 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34357 7vd5:C (2.5) BS02 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34358 7vd5:C (2.5) BS03 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34359 7vd5:C (2.5) BS04 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34360 7vd5:C (2.5) BS05 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34361 7vd5:C (2.5) BS06 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34362 7vd5:C (2.5) BS07 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34363 7vd5:C (2.5) BS08 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34364 7vd5:C (2.5) BS09 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34365 7vd5:C (2.5) BS10 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34366 7vd5:C (2.5) BS11 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34367 7vd5:C (2.5) BS12 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34368 7vd5:C (2.5) BS13 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34369 7vd5:C (2.5) BS14 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34370 7vd5:C (2.5) BS15 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34371 7vd5:C (2.5) BS16 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34372 7vd5:C (2.5) BS17 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34373 7vd5:C (2.5) BS18 CLA ? GO:0005737 ... A0A679BVV7 N/A
    34374 7vd5:D (2.5) BS05 CLA 1.10.3.9 GO:0005506 ... A0A679C012 N/A
    34375 7vd5:D (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... A0A679C012 N/A
    34376 7vd5:D (2.5) BS07 CLA 1.10.3.9 GO:0005506 ... A0A679C012 N/A
    34377 7vd5:D (2.5) BS09 CLA 1.10.3.9 GO:0005506 ... A0A679C012 N/A
    34378 7vd5:D (2.5) BS10 CLA 1.10.3.9 GO:0005506 ... A0A679C012 N/A
    34379 7vd5:H (2.5) BS01 CLA ? GO:0009507 ... B7XBY7 N/A
    34380 7vd5:H (2.5) BS02 CLA ? GO:0009507 ... B7XBY7 N/A
    34381 7vd5:H (2.5) BS03 CLA ? GO:0009507 ... B7XBY7 N/A
    34382 7vd5:I (2.5) BS01 CLA ? GO:0005737 ... A0A679BVT8 N/A
    34383 7vd5:I (2.5) BS02 CLA ? GO:0005737 ... A0A679BVT8 N/A
    34384 7vd5:I (2.5) BS03 CLA ? GO:0005737 ... A0A679BVT8 N/A
    34385 7vd5:K (2.5) BS01 CLA ? GO:0009523 ... A0A679BWI3 N/A
    34386 7vd5:K (2.5) BS02 CLA ? GO:0009523 ... A0A679BWI3 N/A
    34387 7vd5:L (2.5) BS01 CLA ? GO:0005737 ... A0A679C262 N/A
    34388 7vd5:W (2.5) BS01 CLA ? N/A A0A679C6E8 N/A
    34389 7vd5:W (2.5) BS02 CLA ? N/A A0A679C6E8 N/A
    34390 7vd5:W (2.5) BS03 CLA ? N/A A0A679C6E8 N/A
    34391 7vd5:X (2.5) BS01 CLA ? GO:0009507 ... B6ZHF2 N/A
    34392 7vd5:Z (2.5) BS01 CLA ? GO:0009523 ... A0A679C215 N/A
    34393 7vd5:a (2.5) BS04 CLA ? GO:0009055 ... A0A679C261 N/A
    34394 7vd5:a (2.5) BS05 CLA ? GO:0009055 ... A0A679C261 N/A
    34395 7vd5:a (2.5) BS08 CLA ? GO:0009055 ... A0A679C261 N/A
    34396 7vd5:a (2.5) BS10 CLA ? GO:0009055 ... A0A679C261 N/A
    34397 7vd5:a (2.5) BS11 CLA ? GO:0009055 ... A0A679C261 N/A
    34398 7vd5:a (2.5) BS12 CLA ? GO:0009055 ... A0A679C261 N/A
    34399 7vd5:b (2.5) BS01 CLA ? GO:0009507 ... A0A679C6E3 N/A
    34400 7vd5:b (2.5) BS02 CLA ? GO:0009507 ... A0A679C6E3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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