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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    34001 7umh:q (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34002 7umh:q (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34003 7umh:q (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34004 7umh:q (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34005 7umh:q (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34006 7umh:q (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34007 7umh:q (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34008 7umh:q (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34009 7umh:q (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34010 7umh:q (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34011 7umh:q (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34012 7umh:q (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34013 7umh:q (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34014 7umh:q (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34015 7umh:q (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34016 7umh:q (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34017 7umh:q (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34018 7umh:r (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34019 7umh:r (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34020 7umh:r (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34021 7umh:r (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34022 7umh:r (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34023 7umh:r (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34024 7umh:r (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34025 7umh:r (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34026 7umh:r (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34027 7umh:r (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34028 7umh:r (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34029 7umh:r (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34030 7umh:r (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34031 7umh:r (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34032 7umh:r (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34033 7umh:r (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34034 7umh:r (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34035 7umh:r (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34036 7umh:r (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34037 7umh:s (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34038 7umh:s (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34039 7umh:s (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34040 7umh:s (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34041 7umh:s (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34042 7umh:s (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34043 7umh:s (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34044 7umh:s (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34045 7umh:s (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34046 7umh:s (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34047 7umh:s (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34048 7umh:s (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34049 7umh:s (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34050 7umh:s (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34051 7umh:s (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34052 7umh:s (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34053 7umh:s (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34054 7umh:s (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34055 7umh:s (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34056 7umh:t (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34057 7umh:t (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34058 7umh:t (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34059 7umh:t (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34060 7umh:t (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34061 7umh:t (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34062 7umh:t (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34063 7umh:t (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34064 7umh:t (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34065 7umh:t (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34066 7umh:t (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34067 7umh:t (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34068 7umh:t (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34069 7umh:t (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34070 7umh:t (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34071 7umh:t (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34072 7umh:t (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34073 7umh:t (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34074 7umh:t (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34075 7umh:u (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34076 7umh:u (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34077 7umh:u (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34078 7umh:u (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34079 7umh:u (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34080 7umh:u (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34081 7umh:u (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34082 7umh:u (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34083 7umh:u (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34084 7umh:u (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34085 7umh:u (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34086 7umh:u (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34087 7umh:u (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34088 7umh:u (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34089 7umh:u (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34090 7umh:u (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34091 7umh:u (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34092 7umh:u (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34093 7umh:u (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34094 7umh:u (2.6) BS20 CLA ? GO:0005886 ... Q55274 37532717
    34095 7umh:v (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34096 7umh:v (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34097 7umh:v (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34098 7umh:v (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34099 7umh:v (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34100 7umh:v (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34101 7umh:v (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34102 7umh:v (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34103 7umh:v (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34104 7umh:v (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34105 7umh:v (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34106 7umh:v (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34107 7umh:v (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34108 7umh:v (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34109 7umh:v (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34110 7umh:v (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34111 7umh:v (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34112 7umh:v (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34113 7umh:v (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34114 7umh:w (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34115 7umh:w (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34116 7umh:w (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34117 7umh:w (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34118 7umh:w (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34119 7umh:w (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34120 7umh:w (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34121 7umh:w (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34122 7umh:w (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34123 7umh:w (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34124 7umh:w (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34125 7umh:w (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34126 7umh:w (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34127 7umh:w (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34128 7umh:w (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34129 7umh:w (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34130 7umh:w (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34131 7umh:w (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34132 7umh:w (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34133 7umh:w (2.6) BS20 CLA ? GO:0005886 ... Q55274 37532717
    34134 7umh:x (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34135 7umh:x (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34136 7umh:x (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34137 7umh:x (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34138 7umh:x (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34139 7umh:x (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34140 7umh:x (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34141 7umh:x (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34142 7umh:x (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34143 7umh:x (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34144 7umh:x (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34145 7umh:x (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34146 7umh:x (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34147 7umh:x (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34148 7umh:x (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34149 7umh:x (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34150 7umh:x (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34151 7umh:x (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34152 7umh:x (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34153 7umh:y (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    34154 7umh:y (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    34155 7umh:y (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    34156 7umh:y (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    34157 7umh:y (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    34158 7umh:y (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    34159 7umh:y (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    34160 7umh:y (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    34161 7umh:y (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    34162 7umh:y (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    34163 7umh:y (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    34164 7umh:y (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    34165 7umh:y (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    34166 7umh:y (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    34167 7umh:y (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    34168 7umh:y (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    34169 7umh:y (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    34170 7umh:y (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    34171 7umh:y (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    34172 7vd5:11 (2.5) BS01 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34173 7vd5:11 (2.5) BS03 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34174 7vd5:11 (2.5) BS05 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34175 7vd5:11 (2.5) BS07 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34176 7vd5:11 (2.5) BS08 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34177 7vd5:11 (2.5) BS10 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34178 7vd5:11 (2.5) BS18 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34179 7vd5:12 (2.5) BS01 CLA N/A GO:0009765 ... N/A N/A
    34180 7vd5:12 (2.5) BS04 CLA N/A GO:0009765 ... N/A N/A
    34181 7vd5:12 (2.5) BS05 CLA N/A GO:0009765 ... N/A N/A
    34182 7vd5:12 (2.5) BS06 CLA N/A GO:0009765 ... N/A N/A
    34183 7vd5:12 (2.5) BS08 CLA N/A GO:0009765 ... N/A N/A
    34184 7vd5:12 (2.5) BS10 CLA N/A GO:0009765 ... N/A N/A
    34185 7vd5:12 (2.5) BS11 CLA N/A GO:0009765 ... N/A N/A
    34186 7vd5:12 (2.5) BS13 CLA N/A GO:0009765 ... N/A N/A
    34187 7vd5:13 (2.5) BS01 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34188 7vd5:13 (2.5) BS04 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34189 7vd5:13 (2.5) BS06 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34190 7vd5:13 (2.5) BS08 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34191 7vd5:13 (2.5) BS10 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34192 7vd5:13 (2.5) BS11 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34193 7vd5:13 (2.5) BS13 CLA ? GO:0009765 ... A0A679BXP6 N/A
    34194 7vd5:14 (2.5) BS01 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34195 7vd5:14 (2.5) BS03 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34196 7vd5:14 (2.5) BS04 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34197 7vd5:14 (2.5) BS05 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34198 7vd5:14 (2.5) BS07 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34199 7vd5:14 (2.5) BS09 CLA ? GO:0009416 ... A0A679BXP6 N/A
    34200 7vd5:14 (2.5) BS10 CLA ? GO:0009416 ... A0A679BXP6 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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