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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33601 7umh:H (2.6) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33602 7umh:H (2.6) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33603 7umh:H (2.6) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33604 7umh:H (2.6) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33605 7umh:H (2.6) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33606 7umh:H (2.6) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33607 7umh:H (2.6) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33608 7umh:H (2.6) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33609 7umh:H (2.6) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33610 7umh:H (2.6) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33611 7umh:H (2.6) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33612 7umh:H (2.6) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33613 7umh:H (2.6) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33614 7umh:H (2.6) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33615 7umh:H (2.6) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33616 7umh:H (2.6) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33617 7umh:H (2.6) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33618 7umh:H (2.6) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33619 7umh:H (2.6) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33620 7umh:H (2.6) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33621 7umh:H (2.6) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33622 7umh:H (2.6) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33623 7umh:H (2.6) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33624 7umh:H (2.6) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33625 7umh:H (2.6) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33626 7umh:H (2.6) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33627 7umh:H (2.6) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33628 7umh:H (2.6) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33629 7umh:H (2.6) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33630 7umh:H (2.6) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33631 7umh:H (2.6) BS43 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33632 7umh:H (2.6) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33633 7umh:H (2.6) BS45 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33634 7umh:H (2.6) BS46 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33635 7umh:H (2.6) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33636 7umh:H (2.6) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33637 7umh:H (2.6) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33638 7umh:H (2.6) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33639 7umh:I (2.6) BS01 CLA ? GO:0009522 ... Q55330 37532717
    33640 7umh:I (2.6) BS02 CLA ? GO:0009522 ... Q55330 37532717
    33641 7umh:I (2.6) BS03 CLA ? GO:0009522 ... Q55330 37532717
    33642 7umh:I (2.6) BS04 CLA ? GO:0009522 ... Q55330 37532717
    33643 7umh:I (2.6) BS05 CLA ? GO:0009522 ... Q55330 37532717
    33644 7umh:J (2.6) BS01 CLA ? GO:0009522 ... Q55329 37532717
    33645 7umh:J (2.6) BS02 CLA ? GO:0009522 ... Q55329 37532717
    33646 7umh:J (2.6) BS03 CLA ? GO:0009522 ... Q55329 37532717
    33647 7umh:J (2.6) BS04 CLA ? GO:0009522 ... Q55329 37532717
    33648 7umh:J (2.6) BS05 CLA ? GO:0009522 ... Q55329 37532717
    33649 7umh:J (2.6) BS06 CLA ? GO:0009522 ... Q55329 37532717
    33650 7umh:J (2.6) BS07 CLA ? GO:0009522 ... Q55329 37532717
    33651 7umh:K (2.6) BS01 CLA ? GO:0009522 ... P72712 37532717
    33652 7umh:K (2.6) BS02 CLA ? GO:0009522 ... P72712 37532717
    33653 7umh:K (2.6) BS03 CLA ? GO:0009522 ... P72712 37532717
    33654 7umh:K (2.6) BS04 CLA ? GO:0009522 ... P72712 37532717
    33655 7umh:K (2.6) BS05 CLA ? GO:0009522 ... P72712 37532717
    33656 7umh:L (2.6) BS01 CLA ? GO:0005886 ... P37277 37532717
    33657 7umh:L (2.6) BS02 CLA ? GO:0005886 ... P37277 37532717
    33658 7umh:L (2.6) BS03 CLA ? GO:0005886 ... P37277 37532717
    33659 7umh:L (2.6) BS05 CLA ? GO:0005886 ... P37277 37532717
    33660 7umh:L (2.6) BS06 CLA ? GO:0005886 ... P37277 37532717
    33661 7umh:L (2.6) BS07 CLA ? GO:0005886 ... P37277 37532717
    33662 7umh:L (2.6) BS08 CLA ? GO:0005886 ... P37277 37532717
    33663 7umh:L (2.6) BS10 CLA ? GO:0005886 ... P37277 37532717
    33664 7umh:M (2.6) BS01 CLA ? GO:0009522 ... P72986 37532717
    33665 7umh:Q (2.6) BS01 CLA ? GO:0009522 ... P29256 37532717
    33666 7umh:Q (2.6) BS02 CLA ? GO:0009522 ... P29256 37532717
    33667 7umh:Q (2.6) BS03 CLA ? GO:0009522 ... P29256 37532717
    33668 7umh:Q (2.6) BS04 CLA ? GO:0009522 ... P29256 37532717
    33669 7umh:Q (2.6) BS05 CLA ? GO:0009522 ... P29256 37532717
    33670 7umh:Q (2.6) BS06 CLA ? GO:0009522 ... P29256 37532717
    33671 7umh:Q (2.6) BS07 CLA ? GO:0009522 ... P29256 37532717
    33672 7umh:R (2.6) BS01 CLA ? GO:0009522 ... Q55330 37532717
    33673 7umh:R (2.6) BS02 CLA ? GO:0009522 ... Q55330 37532717
    33674 7umh:R (2.6) BS03 CLA ? GO:0009522 ... Q55330 37532717
    33675 7umh:S (2.6) BS01 CLA ? GO:0009522 ... Q55329 37532717
    33676 7umh:S (2.6) BS02 CLA ? GO:0009522 ... Q55329 37532717
    33677 7umh:S (2.6) BS03 CLA ? GO:0009522 ... Q55329 37532717
    33678 7umh:S (2.6) BS04 CLA ? GO:0009522 ... Q55329 37532717
    33679 7umh:S (2.6) BS05 CLA ? GO:0009522 ... Q55329 37532717
    33680 7umh:S (2.6) BS06 CLA ? GO:0009522 ... Q55329 37532717
    33681 7umh:T (2.6) BS01 CLA ? GO:0009522 ... P72712 37532717
    33682 7umh:T (2.6) BS02 CLA ? GO:0009522 ... P72712 37532717
    33683 7umh:T (2.6) BS03 CLA ? GO:0009522 ... P72712 37532717
    33684 7umh:T (2.6) BS04 CLA ? GO:0009522 ... P72712 37532717
    33685 7umh:T (2.6) BS05 CLA ? GO:0009522 ... P72712 37532717
    33686 7umh:U (2.6) BS01 CLA ? GO:0005886 ... P37277 37532717
    33687 7umh:U (2.6) BS02 CLA ? GO:0005886 ... P37277 37532717
    33688 7umh:U (2.6) BS03 CLA ? GO:0005886 ... P37277 37532717
    33689 7umh:U (2.6) BS04 CLA ? GO:0005886 ... P37277 37532717
    33690 7umh:U (2.6) BS06 CLA ? GO:0005886 ... P37277 37532717
    33691 7umh:U (2.6) BS07 CLA ? GO:0005886 ... P37277 37532717
    33692 7umh:U (2.6) BS08 CLA ? GO:0005886 ... P37277 37532717
    33693 7umh:U (2.6) BS10 CLA ? GO:0005886 ... P37277 37532717
    33694 7umh:V (2.6) BS01 CLA ? GO:0009522 ... P72986 37532717
    33695 7umh:W (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    33696 7umh:W (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    33697 7umh:W (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    33698 7umh:W (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    33699 7umh:W (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    33700 7umh:W (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    33701 7umh:W (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    33702 7umh:W (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    33703 7umh:W (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    33704 7umh:W (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    33705 7umh:W (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    33706 7umh:W (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    33707 7umh:W (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    33708 7umh:W (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    33709 7umh:W (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    33710 7umh:W (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    33711 7umh:W (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    33712 7umh:W (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    33713 7umh:W (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    33714 7umh:X (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    33715 7umh:X (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    33716 7umh:X (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    33717 7umh:X (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    33718 7umh:X (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    33719 7umh:X (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    33720 7umh:X (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    33721 7umh:X (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    33722 7umh:X (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    33723 7umh:X (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    33724 7umh:X (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    33725 7umh:X (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    33726 7umh:X (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    33727 7umh:X (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    33728 7umh:X (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    33729 7umh:X (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    33730 7umh:X (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    33731 7umh:X (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    33732 7umh:X (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    33733 7umh:Y (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    33734 7umh:Y (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    33735 7umh:Y (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    33736 7umh:Y (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    33737 7umh:Y (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    33738 7umh:Y (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    33739 7umh:Y (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    33740 7umh:Y (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    33741 7umh:Y (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    33742 7umh:Y (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    33743 7umh:Y (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    33744 7umh:Y (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    33745 7umh:Y (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    33746 7umh:Y (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    33747 7umh:Y (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    33748 7umh:Y (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    33749 7umh:Y (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    33750 7umh:Y (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    33751 7umh:Y (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    33752 7umh:Z (2.6) BS01 CLA ? GO:0005886 ... Q55274 37532717
    33753 7umh:Z (2.6) BS02 CLA ? GO:0005886 ... Q55274 37532717
    33754 7umh:Z (2.6) BS03 CLA ? GO:0005886 ... Q55274 37532717
    33755 7umh:Z (2.6) BS04 CLA ? GO:0005886 ... Q55274 37532717
    33756 7umh:Z (2.6) BS05 CLA ? GO:0005886 ... Q55274 37532717
    33757 7umh:Z (2.6) BS06 CLA ? GO:0005886 ... Q55274 37532717
    33758 7umh:Z (2.6) BS07 CLA ? GO:0005886 ... Q55274 37532717
    33759 7umh:Z (2.6) BS08 CLA ? GO:0005886 ... Q55274 37532717
    33760 7umh:Z (2.6) BS09 CLA ? GO:0005886 ... Q55274 37532717
    33761 7umh:Z (2.6) BS10 CLA ? GO:0005886 ... Q55274 37532717
    33762 7umh:Z (2.6) BS11 CLA ? GO:0005886 ... Q55274 37532717
    33763 7umh:Z (2.6) BS12 CLA ? GO:0005886 ... Q55274 37532717
    33764 7umh:Z (2.6) BS13 CLA ? GO:0005886 ... Q55274 37532717
    33765 7umh:Z (2.6) BS14 CLA ? GO:0005886 ... Q55274 37532717
    33766 7umh:Z (2.6) BS15 CLA ? GO:0005886 ... Q55274 37532717
    33767 7umh:Z (2.6) BS16 CLA ? GO:0005886 ... Q55274 37532717
    33768 7umh:Z (2.6) BS17 CLA ? GO:0005886 ... Q55274 37532717
    33769 7umh:Z (2.6) BS18 CLA ? GO:0005886 ... Q55274 37532717
    33770 7umh:Z (2.6) BS19 CLA ? GO:0005886 ... Q55274 37532717
    33771 7umh:Z (2.6) BS20 CLA ? GO:0005886 ... Q55274 37532717
    33772 7umh:a (2.6) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33773 7umh:a (2.6) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33774 7umh:a (2.6) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33775 7umh:a (2.6) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33776 7umh:a (2.6) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33777 7umh:a (2.6) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33778 7umh:a (2.6) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33779 7umh:a (2.6) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33780 7umh:a (2.6) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33781 7umh:a (2.6) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33782 7umh:a (2.6) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33783 7umh:a (2.6) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33784 7umh:a (2.6) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33785 7umh:a (2.6) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33786 7umh:a (2.6) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33787 7umh:a (2.6) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33788 7umh:a (2.6) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33789 7umh:a (2.6) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33790 7umh:a (2.6) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33791 7umh:a (2.6) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33792 7umh:a (2.6) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33793 7umh:a (2.6) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33794 7umh:a (2.6) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33795 7umh:a (2.6) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33796 7umh:a (2.6) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33797 7umh:a (2.6) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33798 7umh:a (2.6) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33799 7umh:a (2.6) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    33800 7umh:a (2.6) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 37532717
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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