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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    32201 7r3k:B (2.52) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32202 7r3k:B (2.52) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32203 7r3k:B (2.52) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32204 7r3k:B (2.52) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32205 7r3k:B (2.52) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32206 7r3k:B (2.52) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32207 7r3k:B (2.52) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32208 7r3k:B (2.52) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32209 7r3k:B (2.52) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32210 7r3k:B (2.52) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32211 7r3k:B (2.52) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32212 7r3k:B (2.52) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32213 7r3k:B (2.52) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32214 7r3k:B (2.52) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32215 7r3k:B (2.52) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32216 7r3k:B (2.52) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32217 7r3k:B (2.52) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32218 7r3k:B (2.52) BS49 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32219 7r3k:B (2.52) BS50 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32220 7r3k:B (2.52) BS51 CLA 1.97.1.12 GO:0000287 ... P09144 36979472
    32221 7r3k:F (2.52) BS01 CLA ? GO:0005515 ... P12356 36979472
    32222 7r3k:F (2.52) BS02 CLA ? GO:0005515 ... P12356 36979472
    32223 7r3k:F (2.52) BS03 CLA ? GO:0005515 ... P12356 36979472
    32224 7r3k:F (2.52) BS04 CLA ? GO:0005515 ... P12356 36979472
    32225 7r3k:F (2.52) BS05 CLA ? GO:0005515 ... P12356 36979472
    32226 7r3k:F (2.52) BS06 CLA ? GO:0005515 ... P12356 36979472
    32227 7r3k:F (2.52) BS08 CLA ? GO:0005515 ... P12356 36979472
    32228 7r3k:G (2.52) BS01 CLA ? GO:0009507 ... P14224 36979472
    32229 7r3k:G (2.52) BS02 CLA ? GO:0009507 ... P14224 36979472
    32230 7r3k:G (2.52) BS03 CLA ? GO:0009507 ... P14224 36979472
    32231 7r3k:G (2.52) BS04 CLA ? GO:0009507 ... P14224 36979472
    32232 7r3k:I (2.52) BS01 CLA ? GO:0009522 ... A8IFG7 36979472
    32233 7r3k:I (2.52) BS02 CLA ? GO:0009522 ... A8IFG7 36979472
    32234 7r3k:J (2.52) BS01 CLA ? GO:0009507 ... P59777 36979472
    32235 7r3k:J (2.52) BS02 CLA ? GO:0009507 ... P59777 36979472
    32236 7r3k:J (2.52) BS03 CLA ? GO:0009507 ... P59777 36979472
    32237 7r3k:J (2.52) BS04 CLA ? GO:0009507 ... P59777 36979472
    32238 7r3k:K (2.52) BS01 CLA ? GO:0009507 ... P14225 36979472
    32239 7r3k:K (2.52) BS02 CLA ? GO:0009507 ... P14225 36979472
    32240 7r3k:K (2.52) BS03 CLA ? GO:0009507 ... P14225 36979472
    32241 7r3k:K (2.52) BS04 CLA ? GO:0009507 ... P14225 36979472
    32242 7r3k:K (2.52) BS05 CLA ? GO:0009507 ... P14225 36979472
    32243 7r3k:K (2.52) BS06 CLA ? GO:0009507 ... P14225 36979472
    32244 7r3k:K (2.52) BS07 CLA ? GO:0009507 ... P14225 36979472
    32245 7r3k:Z (2.52) BS02 CLA ? GO:0009416 ... Q05093 36979472
    32246 7r3k:Z (2.52) BS03 CLA ? GO:0009416 ... Q05093 36979472
    32247 7r3k:Z (2.52) BS04 CLA ? GO:0009416 ... Q05093 36979472
    32248 7r3k:Z (2.52) BS05 CLA ? GO:0009416 ... Q05093 36979472
    32249 7r3k:Z (2.52) BS06 CLA ? GO:0009416 ... Q05093 36979472
    32250 7r3k:Z (2.52) BS07 CLA ? GO:0009416 ... Q05093 36979472
    32251 7r3k:Z (2.52) BS10 CLA ? GO:0009416 ... Q05093 36979472
    32252 7r3k:Z (2.52) BS11 CLA ? GO:0009416 ... Q05093 36979472
    32253 7r3k:Z (2.52) BS13 CLA ? GO:0009416 ... Q05093 36979472
    32254 7r3k:Z (2.52) BS14 CLA ? GO:0009416 ... Q05093 36979472
    32255 7rcv:A (2.01) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32256 7rcv:A (2.01) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32257 7rcv:A (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32258 7rcv:A (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32259 7rcv:A (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32260 7rcv:B (2.01) BS01 CLA ? GO:0009521 ... P05429 34937700
    32261 7rcv:B (2.01) BS02 CLA ? GO:0009521 ... P05429 34937700
    32262 7rcv:B (2.01) BS03 CLA ? GO:0009521 ... P05429 34937700
    32263 7rcv:B (2.01) BS04 CLA ? GO:0009521 ... P05429 34937700
    32264 7rcv:B (2.01) BS05 CLA ? GO:0009521 ... P05429 34937700
    32265 7rcv:B (2.01) BS06 CLA ? GO:0009521 ... P05429 34937700
    32266 7rcv:B (2.01) BS07 CLA ? GO:0009521 ... P05429 34937700
    32267 7rcv:B (2.01) BS08 CLA ? GO:0009521 ... P05429 34937700
    32268 7rcv:B (2.01) BS09 CLA ? GO:0009521 ... P05429 34937700
    32269 7rcv:B (2.01) BS10 CLA ? GO:0009521 ... P05429 34937700
    32270 7rcv:B (2.01) BS11 CLA ? GO:0009521 ... P05429 34937700
    32271 7rcv:B (2.01) BS12 CLA ? GO:0009521 ... P05429 34937700
    32272 7rcv:B (2.01) BS13 CLA ? GO:0009521 ... P05429 34937700
    32273 7rcv:B (2.01) BS14 CLA ? GO:0009521 ... P05429 34937700
    32274 7rcv:B (2.01) BS15 CLA ? GO:0009521 ... P05429 34937700
    32275 7rcv:B (2.01) BS16 CLA ? GO:0009521 ... P05429 34937700
    32276 7rcv:C (2.01) BS02 CLA ? GO:0005737 ... P09193 34937700
    32277 7rcv:C (2.01) BS03 CLA ? GO:0005737 ... P09193 34937700
    32278 7rcv:C (2.01) BS04 CLA ? GO:0005737 ... P09193 34937700
    32279 7rcv:C (2.01) BS05 CLA ? GO:0005737 ... P09193 34937700
    32280 7rcv:C (2.01) BS06 CLA ? GO:0005737 ... P09193 34937700
    32281 7rcv:C (2.01) BS07 CLA ? GO:0005737 ... P09193 34937700
    32282 7rcv:C (2.01) BS08 CLA ? GO:0005737 ... P09193 34937700
    32283 7rcv:C (2.01) BS09 CLA ? GO:0005737 ... P09193 34937700
    32284 7rcv:C (2.01) BS10 CLA ? GO:0005737 ... P09193 34937700
    32285 7rcv:C (2.01) BS11 CLA ? GO:0005737 ... P09193 34937700
    32286 7rcv:C (2.01) BS12 CLA ? GO:0005737 ... P09193 34937700
    32287 7rcv:C (2.01) BS13 CLA ? GO:0005737 ... P09193 34937700
    32288 7rcv:C (2.01) BS14 CLA ? GO:0005737 ... P09193 34937700
    32289 7rcv:D (2.01) BS02 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32290 7rcv:D (2.01) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32291 7rcv:D (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32292 7rcv:D (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32293 7rcv:D (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32294 7rcv:H (2.01) BS01 CLA ? GO:0009523 ... P14835 34937700
    32295 7rcv:H (2.01) BS02 CLA ? GO:0009523 ... P14835 34937700
    32296 7rcv:H (2.01) BS03 CLA ? GO:0009523 ... P14835 34937700
    32297 7rcv:I (2.01) BS01 CLA ? GO:0005737 ... Q54697 34937700
    32298 7rcv:K (2.01) BS01 CLA ? GO:0005737 ... P15819 34937700
    32299 7rcv:K (2.01) BS02 CLA ? GO:0005737 ... P15819 34937700
    32300 7rcv:X (2.01) BS01 CLA ? GO:0009523 ... P72575 34937700
    32301 7rcv:Z (2.01) BS01 CLA ? GO:0009523 ... P73528 34937700
    32302 7rcv:a (2.01) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32303 7rcv:a (2.01) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32304 7rcv:a (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32305 7rcv:a (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32306 7rcv:a (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    32307 7rcv:b (2.01) BS01 CLA ? GO:0009521 ... P05429 34937700
    32308 7rcv:b (2.01) BS02 CLA ? GO:0009521 ... P05429 34937700
    32309 7rcv:b (2.01) BS03 CLA ? GO:0009521 ... P05429 34937700
    32310 7rcv:b (2.01) BS04 CLA ? GO:0009521 ... P05429 34937700
    32311 7rcv:b (2.01) BS05 CLA ? GO:0009521 ... P05429 34937700
    32312 7rcv:b (2.01) BS06 CLA ? GO:0009521 ... P05429 34937700
    32313 7rcv:b (2.01) BS07 CLA ? GO:0009521 ... P05429 34937700
    32314 7rcv:b (2.01) BS08 CLA ? GO:0009521 ... P05429 34937700
    32315 7rcv:b (2.01) BS09 CLA ? GO:0009521 ... P05429 34937700
    32316 7rcv:b (2.01) BS10 CLA ? GO:0009521 ... P05429 34937700
    32317 7rcv:b (2.01) BS11 CLA ? GO:0009521 ... P05429 34937700
    32318 7rcv:b (2.01) BS12 CLA ? GO:0009521 ... P05429 34937700
    32319 7rcv:b (2.01) BS13 CLA ? GO:0009521 ... P05429 34937700
    32320 7rcv:b (2.01) BS14 CLA ? GO:0009521 ... P05429 34937700
    32321 7rcv:b (2.01) BS15 CLA ? GO:0009521 ... P05429 34937700
    32322 7rcv:b (2.01) BS16 CLA ? GO:0009521 ... P05429 34937700
    32323 7rcv:c (2.01) BS02 CLA ? GO:0005737 ... P09193 34937700
    32324 7rcv:c (2.01) BS03 CLA ? GO:0005737 ... P09193 34937700
    32325 7rcv:c (2.01) BS04 CLA ? GO:0005737 ... P09193 34937700
    32326 7rcv:c (2.01) BS05 CLA ? GO:0005737 ... P09193 34937700
    32327 7rcv:c (2.01) BS06 CLA ? GO:0005737 ... P09193 34937700
    32328 7rcv:c (2.01) BS07 CLA ? GO:0005737 ... P09193 34937700
    32329 7rcv:c (2.01) BS08 CLA ? GO:0005737 ... P09193 34937700
    32330 7rcv:c (2.01) BS09 CLA ? GO:0005737 ... P09193 34937700
    32331 7rcv:c (2.01) BS10 CLA ? GO:0005737 ... P09193 34937700
    32332 7rcv:c (2.01) BS11 CLA ? GO:0005737 ... P09193 34937700
    32333 7rcv:c (2.01) BS12 CLA ? GO:0005737 ... P09193 34937700
    32334 7rcv:c (2.01) BS13 CLA ? GO:0005737 ... P09193 34937700
    32335 7rcv:c (2.01) BS14 CLA ? GO:0005737 ... P09193 34937700
    32336 7rcv:d (2.01) BS02 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32337 7rcv:d (2.01) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32338 7rcv:d (2.01) BS06 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32339 7rcv:d (2.01) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32340 7rcv:d (2.01) BS09 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    32341 7rcv:h (2.01) BS01 CLA ? GO:0009523 ... P14835 34937700
    32342 7rcv:h (2.01) BS02 CLA ? GO:0009523 ... P14835 34937700
    32343 7rcv:h (2.01) BS03 CLA ? GO:0009523 ... P14835 34937700
    32344 7rcv:i (2.01) BS01 CLA ? GO:0005737 ... Q54697 34937700
    32345 7rcv:k (2.01) BS01 CLA ? GO:0005737 ... P15819 34937700
    32346 7rcv:k (2.01) BS02 CLA ? GO:0005737 ... P15819 34937700
    32347 7rcv:x (2.01) BS01 CLA ? GO:0009523 ... P72575 34937700
    32348 7rcv:z (2.01) BS01 CLA ? GO:0009523 ... P73528 34937700
    32349 7rf1:A (1.89) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32350 7rf1:A (1.89) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32351 7rf1:A (1.89) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32352 7rf1:A (1.89) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32353 7rf1:B (1.89) BS01 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32354 7rf1:B (1.89) BS02 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32355 7rf1:B (1.89) BS03 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32356 7rf1:B (1.89) BS04 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32357 7rf1:B (1.89) BS05 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32358 7rf1:B (1.89) BS06 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32359 7rf1:B (1.89) BS07 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32360 7rf1:B (1.89) BS08 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32361 7rf1:B (1.89) BS09 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32362 7rf1:B (1.89) BS10 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32363 7rf1:B (1.89) BS11 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32364 7rf1:B (1.89) BS12 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32365 7rf1:B (1.89) BS13 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32366 7rf1:B (1.89) BS14 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32367 7rf1:B (1.89) BS15 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32368 7rf1:B (1.89) BS16 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32369 7rf1:C (1.89) BS02 CLA ? GO:0005737 ... Q8DIF8 34764256
    32370 7rf1:C (1.89) BS03 CLA ? GO:0005737 ... Q8DIF8 34764256
    32371 7rf1:C (1.89) BS04 CLA ? GO:0005737 ... Q8DIF8 34764256
    32372 7rf1:C (1.89) BS05 CLA ? GO:0005737 ... Q8DIF8 34764256
    32373 7rf1:C (1.89) BS06 CLA ? GO:0005737 ... Q8DIF8 34764256
    32374 7rf1:C (1.89) BS07 CLA ? GO:0005737 ... Q8DIF8 34764256
    32375 7rf1:C (1.89) BS08 CLA ? GO:0005737 ... Q8DIF8 34764256
    32376 7rf1:C (1.89) BS09 CLA ? GO:0005737 ... Q8DIF8 34764256
    32377 7rf1:C (1.89) BS10 CLA ? GO:0005737 ... Q8DIF8 34764256
    32378 7rf1:C (1.89) BS11 CLA ? GO:0005737 ... Q8DIF8 34764256
    32379 7rf1:C (1.89) BS12 CLA ? GO:0005737 ... Q8DIF8 34764256
    32380 7rf1:C (1.89) BS13 CLA ? GO:0005737 ... Q8DIF8 34764256
    32381 7rf1:C (1.89) BS14 CLA ? GO:0005737 ... Q8DIF8 34764256
    32382 7rf1:D (1.89) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    32383 7rf1:D (1.89) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    32384 7rf1:D (1.89) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    32385 7rf1:D (1.89) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    32386 7rf1:D (1.89) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 34764256
    32387 7rf1:H (1.89) BS01 CLA ? GO:0009523 ... Q8DJ43 34764256
    32388 7rf1:H (1.89) BS02 CLA ? GO:0009523 ... Q8DJ43 34764256
    32389 7rf1:H (1.89) BS03 CLA ? GO:0009523 ... Q8DJ43 34764256
    32390 7rf1:I (1.89) BS01 CLA ? GO:0005737 ... Q8DJZ6 34764256
    32391 7rf1:K (1.89) BS02 CLA ? GO:0005737 ... Q9F1K9 34764256
    32392 7rf1:K (1.89) BS03 CLA ? GO:0005737 ... Q9F1K9 34764256
    32393 7rf1:a (1.89) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32394 7rf1:a (1.89) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32395 7rf1:a (1.89) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32396 7rf1:a (1.89) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 34764256
    32397 7rf1:b (1.89) BS01 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32398 7rf1:b (1.89) BS02 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32399 7rf1:b (1.89) BS03 CLA ? GO:0009521 ... Q8DIQ1 34764256
    32400 7rf1:b (1.89) BS04 CLA ? GO:0009521 ... Q8DIQ1 34764256
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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