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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31401 7piw:g (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31402 7piw:g (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31403 7piw:g1 (4.0) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31404 7piw:g1 (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31405 7piw:g1 (4.0) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31406 7piw:g1 (4.0) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31407 7piw:g1 (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31408 7piw:g1 (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31409 7piw:g1 (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31410 7piw:h (4.0) BS01 CLA ? GO:0009523 ... D0FY02 36799903
    31411 7piw:h (4.0) BS02 CLA ? GO:0009523 ... D0FY02 36799903
    31412 7piw:h (4.0) BS03 CLA ? GO:0009523 ... D0FY02 36799903
    31413 7piw:h1 (4.0) BS01 CLA ? GO:0009523 ... D0FY02 36799903
    31414 7piw:h1 (4.0) BS02 CLA ? GO:0009523 ... D0FY02 36799903
    31415 7piw:h1 (4.0) BS03 CLA ? GO:0009523 ... D0FY02 36799903
    31416 7piw:h1 (4.0) BS04 CLA ? GO:0009523 ... D0FY02 36799903
    31417 7piw:h1 (4.0) BS05 CLA ? GO:0009523 ... D0FY02 36799903
    31418 7piw:i (4.0) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    31419 7piw:i (4.0) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    31420 7piw:i1 (4.0) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    31421 7piw:i1 (4.0) BS03 CLA ? GO:0005737 ... D0FXX5 36799903
    31422 7piw:k (4.0) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    31423 7piw:k (4.0) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    31424 7piw:k1 (4.0) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    31425 7piw:m (4.0) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    31426 7piw:m (4.0) BS02 CLA ? GO:0009523 ... D0FXZ3 36799903
    31427 7piw:m1 (4.0) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    31428 7piw:n (4.0) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31429 7piw:n (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31430 7piw:n (4.0) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31431 7piw:n (4.0) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31432 7piw:n (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31433 7piw:n (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31434 7piw:n (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31435 7piw:n (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31436 7piw:n (4.0) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31437 7piw:n1 (4.0) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31438 7piw:n1 (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31439 7piw:n1 (4.0) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31440 7piw:n1 (4.0) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31441 7piw:n1 (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31442 7piw:n1 (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31443 7piw:n1 (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31444 7piw:n1 (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31445 7piw:r (4.0) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31446 7piw:r (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31447 7piw:r (4.0) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31448 7piw:r (4.0) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31449 7piw:r (4.0) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31450 7piw:r (4.0) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31451 7piw:r (4.0) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31452 7piw:r1 (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31453 7piw:r1 (4.0) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31454 7piw:r1 (4.0) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31455 7piw:r1 (4.0) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31456 7piw:r1 (4.0) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31457 7piw:r1 (4.0) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31458 7piw:r1 (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31459 7piw:s (4.0) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31460 7piw:s (4.0) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31461 7piw:s (4.0) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31462 7piw:s (4.0) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31463 7piw:s (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31464 7piw:s (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31465 7piw:s (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31466 7piw:s (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31467 7piw:s (4.0) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31468 7piw:s1 (4.0) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31469 7piw:s1 (4.0) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31470 7piw:s1 (4.0) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31471 7piw:s1 (4.0) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31472 7piw:s1 (4.0) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31473 7piw:s1 (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31474 7piw:s1 (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31475 7piw:s1 (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31476 7piw:s1 (4.0) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31477 7piw:s1 (4.0) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31478 7piw:s1 (4.0) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31479 7piw:s1 (4.0) BS18 CLA N/A GO:0009765 ... N/A 36799903
    31480 7piw:w1 (4.0) BS01 CLA N/A GO:0009507 ... N/A 36799903
    31481 7piw:x (4.0) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31482 7piw:x1 (4.0) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31483 7piw:y (4.0) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31484 7piw:y (4.0) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31485 7piw:y (4.0) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31486 7piw:y (4.0) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31487 7piw:y (4.0) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31488 7piw:y (4.0) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31489 7piw:y (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31490 7piw:y (4.0) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31491 7piw:y (4.0) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31492 7piw:y (4.0) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31493 7piw:y1 (4.0) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31494 7piw:y1 (4.0) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31495 7piw:y1 (4.0) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31496 7piw:y1 (4.0) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31497 7piw:y1 (4.0) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31498 7piw:y1 (4.0) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31499 7piw:y1 (4.0) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31500 7piw:y1 (4.0) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31501 7piw:y1 (4.0) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31502 7piw:y1 (4.0) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31503 7piw:z (4.0) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31504 7pnk:A (3.61) BS02 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31505 7pnk:A (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31506 7pnk:A (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31507 7pnk:A (3.61) BS07 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31508 7pnk:A (3.61) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31509 7pnk:A (3.61) BS10 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31510 7pnk:B (3.61) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31511 7pnk:B (3.61) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31512 7pnk:B (3.61) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31513 7pnk:B (3.61) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31514 7pnk:B (3.61) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31515 7pnk:B (3.61) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31516 7pnk:B (3.61) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31517 7pnk:B (3.61) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31518 7pnk:B (3.61) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31519 7pnk:B (3.61) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31520 7pnk:B (3.61) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31521 7pnk:B (3.61) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31522 7pnk:B (3.61) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31523 7pnk:B (3.61) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31524 7pnk:B (3.61) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31525 7pnk:B (3.61) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31526 7pnk:C (3.61) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    31527 7pnk:C (3.61) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    31528 7pnk:C (3.61) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    31529 7pnk:C (3.61) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    31530 7pnk:C (3.61) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    31531 7pnk:C (3.61) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    31532 7pnk:C (3.61) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    31533 7pnk:C (3.61) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    31534 7pnk:C (3.61) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    31535 7pnk:C (3.61) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    31536 7pnk:C (3.61) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    31537 7pnk:C (3.61) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    31538 7pnk:C (3.61) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    31539 7pnk:D (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31540 7pnk:D (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31541 7pnk:D (3.61) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31542 7pnk:D (3.61) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31543 7pnk:D (3.61) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31544 7pnk:G (3.61) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    31545 7pnk:G (3.61) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    31546 7pnk:G (3.61) BS09 CLA ? GO:0009765 ... A1XKU7 36799903
    31547 7pnk:G (3.61) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    31548 7pnk:G (3.61) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    31549 7pnk:G (3.61) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    31550 7pnk:G (3.61) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    31551 7pnk:H (3.61) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31552 7pnk:H (3.61) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31553 7pnk:H (3.61) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31554 7pnk:H (3.61) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31555 7pnk:I (3.61) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    31556 7pnk:I (3.61) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    31557 7pnk:K (3.61) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    31558 7pnk:K (3.61) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    31559 7pnk:M (3.61) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    31560 7pnk:N (3.61) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31561 7pnk:N (3.61) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31562 7pnk:N (3.61) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31563 7pnk:N (3.61) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31564 7pnk:N (3.61) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31565 7pnk:N (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31566 7pnk:N (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31567 7pnk:N (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31568 7pnk:N (3.61) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31569 7pnk:S (3.61) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31570 7pnk:S (3.61) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31571 7pnk:S (3.61) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31572 7pnk:S (3.61) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31573 7pnk:S (3.61) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31574 7pnk:S (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31575 7pnk:S (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31576 7pnk:S (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31577 7pnk:S (3.61) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31578 7pnk:S (3.61) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31579 7pnk:S (3.61) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31580 7pnk:S (3.61) BS18 CLA N/A GO:0009765 ... N/A 36799903
    31581 7pnk:X (3.61) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31582 7pnk:Y (3.61) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31583 7pnk:Y (3.61) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31584 7pnk:Y (3.61) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31585 7pnk:Y (3.61) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31586 7pnk:Y (3.61) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31587 7pnk:Y (3.61) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31588 7pnk:Y (3.61) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31589 7pnk:Y (3.61) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31590 7pnk:Z (3.61) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    31591 7pnk:a (3.61) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31592 7pnk:a (3.61) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31593 7pnk:a (3.61) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31594 7pnk:a (3.61) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31595 7pnk:a (3.61) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31596 7pnk:b (3.61) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31597 7pnk:b (3.61) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31598 7pnk:b (3.61) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31599 7pnk:b (3.61) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    31600 7pnk:b (3.61) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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