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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    31001 7pin:c1 (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    31002 7pin:c1 (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    31003 7pin:c1 (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    31004 7pin:c1 (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    31005 7pin:c1 (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    31006 7pin:c1 (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    31007 7pin:c1 (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    31008 7pin:c1 (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    31009 7pin:c1 (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    31010 7pin:c1 (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    31011 7pin:c1 (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    31012 7pin:d (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31013 7pin:d (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31014 7pin:d (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31015 7pin:d (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31016 7pin:d (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31017 7pin:d (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31018 7pin:d1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31019 7pin:d1 (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31020 7pin:d1 (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31021 7pin:d1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31022 7pin:d1 (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31023 7pin:d1 (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    31024 7pin:g (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    31025 7pin:g (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    31026 7pin:g (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    31027 7pin:g (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    31028 7pin:g (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    31029 7pin:g (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    31030 7pin:g (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    31031 7pin:g (3.6) BS14 CLA ? GO:0009765 ... A1XKU7 36799903
    31032 7pin:g1 (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    31033 7pin:g1 (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    31034 7pin:g1 (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    31035 7pin:g1 (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    31036 7pin:g1 (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    31037 7pin:g1 (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    31038 7pin:g1 (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    31039 7pin:g1 (3.6) BS14 CLA ? GO:0009765 ... A1XKU7 36799903
    31040 7pin:h (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31041 7pin:h (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31042 7pin:h (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31043 7pin:h (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31044 7pin:h (3.6) BS06 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31045 7pin:h1 (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31046 7pin:h1 (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31047 7pin:h1 (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31048 7pin:h1 (3.6) BS05 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    31049 7pin:i (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    31050 7pin:i (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    31051 7pin:i1 (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    31052 7pin:i1 (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    31053 7pin:k (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    31054 7pin:k (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    31055 7pin:k1 (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    31056 7pin:k1 (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    31057 7pin:l (3.6) BS01 CLA ? GO:0005737 ... D0FY19 36799903
    31058 7pin:m (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31059 7pin:m1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31060 7pin:n (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31061 7pin:n (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31062 7pin:n (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31063 7pin:n (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31064 7pin:n (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31065 7pin:n (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31066 7pin:n (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31067 7pin:n (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31068 7pin:n1 (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    31069 7pin:n1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31070 7pin:n1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31071 7pin:n1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31072 7pin:n1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31073 7pin:n1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31074 7pin:n1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31075 7pin:r (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31076 7pin:r (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31077 7pin:r (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31078 7pin:r (3.6) BS08 CLA N/A GO:0009765 ... N/A 36799903
    31079 7pin:r (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31080 7pin:r (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31081 7pin:r1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31082 7pin:r1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31083 7pin:r1 (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31084 7pin:r1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31085 7pin:r1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    31086 7pin:r1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31087 7pin:r1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31088 7pin:s (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31089 7pin:s (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31090 7pin:s (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31091 7pin:s (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31092 7pin:s (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31093 7pin:s (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31094 7pin:s (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31095 7pin:s (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31096 7pin:s (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31097 7pin:s (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31098 7pin:s (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31099 7pin:s (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31100 7pin:s1 (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    31101 7pin:s1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31102 7pin:s1 (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    31103 7pin:s1 (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    31104 7pin:s1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31105 7pin:s1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31106 7pin:s1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31107 7pin:s1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31108 7pin:s1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31109 7pin:s1 (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    31110 7pin:s1 (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    31111 7pin:w (3.6) BS01 CLA N/A GO:0009507 ... N/A 36799903
    31112 7pin:x1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    31113 7pin:y (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    31114 7pin:y (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31115 7pin:y (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31116 7pin:y (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31117 7pin:y (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31118 7pin:y (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31119 7pin:y (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31120 7pin:y (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31121 7pin:y (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31122 7pin:y1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    31123 7pin:y1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    31124 7pin:y1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    31125 7pin:y1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    31126 7pin:y1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    31127 7pin:y1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    31128 7pin:y1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    31129 7pin:y1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    31130 7pin:z1 (3.6) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    31131 7piw:A (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31132 7piw:A (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31133 7piw:A (4.0) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31134 7piw:A (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31135 7piw:A (4.0) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31136 7piw:A1 (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31137 7piw:A1 (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31138 7piw:A1 (4.0) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31139 7piw:A1 (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31140 7piw:A1 (4.0) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31141 7piw:A1 (4.0) BS11 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    31142 7piw:B (4.0) BS02 CLA ? GO:0009507 ... D0FY05 36799903
    31143 7piw:B (4.0) BS03 CLA ? GO:0009507 ... D0FY05 36799903
    31144 7piw:B (4.0) BS04 CLA ? GO:0009507 ... D0FY05 36799903
    31145 7piw:B (4.0) BS05 CLA ? GO:0009507 ... D0FY05 36799903
    31146 7piw:B (4.0) BS06 CLA ? GO:0009507 ... D0FY05 36799903
    31147 7piw:B (4.0) BS07 CLA ? GO:0009507 ... D0FY05 36799903
    31148 7piw:B (4.0) BS08 CLA ? GO:0009507 ... D0FY05 36799903
    31149 7piw:B (4.0) BS09 CLA ? GO:0009507 ... D0FY05 36799903
    31150 7piw:B (4.0) BS10 CLA ? GO:0009507 ... D0FY05 36799903
    31151 7piw:B (4.0) BS11 CLA ? GO:0009507 ... D0FY05 36799903
    31152 7piw:B (4.0) BS12 CLA ? GO:0009507 ... D0FY05 36799903
    31153 7piw:B (4.0) BS13 CLA ? GO:0009507 ... D0FY05 36799903
    31154 7piw:B (4.0) BS14 CLA ? GO:0009507 ... D0FY05 36799903
    31155 7piw:B (4.0) BS15 CLA ? GO:0009507 ... D0FY05 36799903
    31156 7piw:B (4.0) BS16 CLA ? GO:0009507 ... D0FY05 36799903
    31157 7piw:B (4.0) BS17 CLA ? GO:0009507 ... D0FY05 36799903
    31158 7piw:B1 (4.0) BS02 CLA ? GO:0009507 ... D0FY05 36799903
    31159 7piw:B1 (4.0) BS03 CLA ? GO:0009507 ... D0FY05 36799903
    31160 7piw:B1 (4.0) BS04 CLA ? GO:0009507 ... D0FY05 36799903
    31161 7piw:B1 (4.0) BS05 CLA ? GO:0009507 ... D0FY05 36799903
    31162 7piw:B1 (4.0) BS06 CLA ? GO:0009507 ... D0FY05 36799903
    31163 7piw:B1 (4.0) BS07 CLA ? GO:0009507 ... D0FY05 36799903
    31164 7piw:B1 (4.0) BS08 CLA ? GO:0009507 ... D0FY05 36799903
    31165 7piw:B1 (4.0) BS09 CLA ? GO:0009507 ... D0FY05 36799903
    31166 7piw:B1 (4.0) BS10 CLA ? GO:0009507 ... D0FY05 36799903
    31167 7piw:B1 (4.0) BS11 CLA ? GO:0009507 ... D0FY05 36799903
    31168 7piw:B1 (4.0) BS12 CLA ? GO:0009507 ... D0FY05 36799903
    31169 7piw:B1 (4.0) BS13 CLA ? GO:0009507 ... D0FY05 36799903
    31170 7piw:B1 (4.0) BS14 CLA ? GO:0009507 ... D0FY05 36799903
    31171 7piw:B1 (4.0) BS15 CLA ? GO:0009507 ... D0FY05 36799903
    31172 7piw:B1 (4.0) BS16 CLA ? GO:0009507 ... D0FY05 36799903
    31173 7piw:B1 (4.0) BS17 CLA ? GO:0009507 ... D0FY05 36799903
    31174 7piw:C (4.0) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    31175 7piw:C (4.0) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    31176 7piw:C (4.0) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    31177 7piw:C (4.0) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    31178 7piw:C (4.0) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    31179 7piw:C (4.0) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    31180 7piw:C (4.0) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    31181 7piw:C (4.0) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    31182 7piw:C (4.0) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    31183 7piw:C (4.0) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    31184 7piw:C (4.0) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    31185 7piw:C (4.0) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    31186 7piw:C (4.0) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    31187 7piw:C1 (4.0) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    31188 7piw:C1 (4.0) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    31189 7piw:C1 (4.0) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    31190 7piw:C1 (4.0) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    31191 7piw:C1 (4.0) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    31192 7piw:C1 (4.0) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    31193 7piw:C1 (4.0) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    31194 7piw:C1 (4.0) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    31195 7piw:C1 (4.0) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    31196 7piw:C1 (4.0) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    31197 7piw:C1 (4.0) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    31198 7piw:C1 (4.0) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    31199 7piw:C1 (4.0) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    31200 7piw:D (4.0) BS02 CLA 1.10.3.9 GO:0005506 ... D0FXW8 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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