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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30801 7pin:C (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    30802 7pin:C (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    30803 7pin:C (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    30804 7pin:C (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    30805 7pin:C (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    30806 7pin:C1 (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    30807 7pin:C1 (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    30808 7pin:C1 (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    30809 7pin:C1 (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    30810 7pin:C1 (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    30811 7pin:C1 (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    30812 7pin:C1 (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    30813 7pin:C1 (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    30814 7pin:C1 (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    30815 7pin:C1 (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    30816 7pin:C1 (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    30817 7pin:C1 (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    30818 7pin:C1 (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    30819 7pin:D (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30820 7pin:D (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30821 7pin:D (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30822 7pin:D (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30823 7pin:D (3.6) BS10 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30824 7pin:D1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30825 7pin:D1 (3.6) BS06 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30826 7pin:D1 (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30827 7pin:D1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30828 7pin:G (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    30829 7pin:G (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    30830 7pin:G (3.6) BS09 CLA ? GO:0009765 ... A1XKU7 36799903
    30831 7pin:G (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    30832 7pin:G (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    30833 7pin:G (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    30834 7pin:G (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    30835 7pin:G1 (3.6) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    30836 7pin:G1 (3.6) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    30837 7pin:G1 (3.6) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    30838 7pin:G1 (3.6) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    30839 7pin:G1 (3.6) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    30840 7pin:G1 (3.6) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    30841 7pin:G1 (3.6) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    30842 7pin:H (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30843 7pin:H (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30844 7pin:H (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30845 7pin:H (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30846 7pin:H1 (3.6) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30847 7pin:H1 (3.6) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30848 7pin:H1 (3.6) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30849 7pin:H1 (3.6) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30850 7pin:H1 (3.6) BS05 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30851 7pin:H1 (3.6) BS06 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30852 7pin:I (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    30853 7pin:I (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    30854 7pin:I1 (3.6) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    30855 7pin:I1 (3.6) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    30856 7pin:K (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    30857 7pin:K (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    30858 7pin:K1 (3.6) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    30859 7pin:K1 (3.6) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    30860 7pin:L1 (3.6) BS01 CLA ? GO:0005737 ... D0FY19 36799903
    30861 7pin:M (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    30862 7pin:M1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    30863 7pin:M1 (3.6) BS02 CLA N/A GO:0009523 ... N/A 36799903
    30864 7pin:N (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30865 7pin:N (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30866 7pin:N (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30867 7pin:N (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30868 7pin:N (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30869 7pin:N (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30870 7pin:N (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30871 7pin:N (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30872 7pin:N1 (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30873 7pin:N1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30874 7pin:N1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30875 7pin:N1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30876 7pin:N1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30877 7pin:N1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30878 7pin:N1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30879 7pin:N1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30880 7pin:R (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30881 7pin:R (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30882 7pin:R (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30883 7pin:R (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    30884 7pin:R (3.6) BS08 CLA N/A GO:0009765 ... N/A 36799903
    30885 7pin:R (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    30886 7pin:R (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30887 7pin:R1 (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    30888 7pin:R1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30889 7pin:R1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30890 7pin:R1 (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    30891 7pin:R1 (3.6) BS08 CLA N/A GO:0009765 ... N/A 36799903
    30892 7pin:R1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    30893 7pin:R1 (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30894 7pin:S (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    30895 7pin:S (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    30896 7pin:S (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    30897 7pin:S (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    30898 7pin:S (3.6) BS08 CLA N/A GO:0009765 ... N/A 36799903
    30899 7pin:S (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30900 7pin:S (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30901 7pin:S (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30902 7pin:S (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    30903 7pin:S (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    30904 7pin:S (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    30905 7pin:S (3.6) BS18 CLA N/A GO:0009765 ... N/A 36799903
    30906 7pin:S1 (3.6) BS01 CLA N/A GO:0009765 ... N/A 36799903
    30907 7pin:S1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    30908 7pin:S1 (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    30909 7pin:S1 (3.6) BS07 CLA N/A GO:0009765 ... N/A 36799903
    30910 7pin:S1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30911 7pin:S1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30912 7pin:S1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30913 7pin:S1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30914 7pin:S1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    30915 7pin:S1 (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    30916 7pin:S1 (3.6) BS17 CLA N/A GO:0009765 ... N/A 36799903
    30917 7pin:W1 (3.6) BS01 CLA N/A GO:0009507 ... N/A 36799903
    30918 7pin:X (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    30919 7pin:X1 (3.6) BS01 CLA N/A GO:0009523 ... N/A 36799903
    30920 7pin:Y (3.6) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30921 7pin:Y (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30922 7pin:Y (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    30923 7pin:Y (3.6) BS06 CLA N/A GO:0009765 ... N/A 36799903
    30924 7pin:Y (3.6) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30925 7pin:Y (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30926 7pin:Y (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30927 7pin:Y (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30928 7pin:Y (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    30929 7pin:Y (3.6) BS16 CLA N/A GO:0009765 ... N/A 36799903
    30930 7pin:Y1 (3.6) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30931 7pin:Y1 (3.6) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30932 7pin:Y1 (3.6) BS05 CLA N/A GO:0009765 ... N/A 36799903
    30933 7pin:Y1 (3.6) BS09 CLA N/A GO:0009765 ... N/A 36799903
    30934 7pin:Y1 (3.6) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30935 7pin:Y1 (3.6) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30936 7pin:Y1 (3.6) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30937 7pin:Y1 (3.6) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30938 7pin:Y1 (3.6) BS15 CLA N/A GO:0009765 ... N/A 36799903
    30939 7pin:Z (3.6) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    30940 7pin:Z1 (3.6) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    30941 7pin:a (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30942 7pin:a (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30943 7pin:a (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30944 7pin:a (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30945 7pin:a (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30946 7pin:a (3.6) BS11 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30947 7pin:a1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30948 7pin:a1 (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30949 7pin:a1 (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30950 7pin:a1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30951 7pin:a1 (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30952 7pin:b (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30953 7pin:b (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30954 7pin:b (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30955 7pin:b (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30956 7pin:b (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30957 7pin:b (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30958 7pin:b (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30959 7pin:b (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30960 7pin:b (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30961 7pin:b (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30962 7pin:b (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30963 7pin:b (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30964 7pin:b (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30965 7pin:b (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30966 7pin:b (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30967 7pin:b (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30968 7pin:b (3.6) BS19 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30969 7pin:b1 (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30970 7pin:b1 (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30971 7pin:b1 (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30972 7pin:b1 (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30973 7pin:b1 (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30974 7pin:b1 (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30975 7pin:b1 (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30976 7pin:b1 (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30977 7pin:b1 (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30978 7pin:b1 (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30979 7pin:b1 (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30980 7pin:b1 (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30981 7pin:b1 (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30982 7pin:b1 (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30983 7pin:b1 (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30984 7pin:b1 (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30985 7pin:b1 (3.6) BS19 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30986 7pin:c (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    30987 7pin:c (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    30988 7pin:c (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    30989 7pin:c (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    30990 7pin:c (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    30991 7pin:c (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    30992 7pin:c (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    30993 7pin:c (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    30994 7pin:c (3.6) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    30995 7pin:c (3.6) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    30996 7pin:c (3.6) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    30997 7pin:c (3.6) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    30998 7pin:c (3.6) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    30999 7pin:c1 (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    31000 7pin:c1 (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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