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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30601 7pi5:G (2.78) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    30602 7pi5:G (2.78) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    30603 7pi5:G (2.78) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    30604 7pi5:G (2.78) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    30605 7pi5:G (2.78) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    30606 7pi5:H (2.78) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30607 7pi5:H (2.78) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30608 7pi5:H (2.78) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30609 7pi5:H (2.78) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30610 7pi5:H (2.78) BS05 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30611 7pi5:I (2.78) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    30612 7pi5:I (2.78) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    30613 7pi5:K (2.78) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    30614 7pi5:K (2.78) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    30615 7pi5:M (2.78) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    30616 7pi5:N (2.78) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30617 7pi5:N (2.78) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30618 7pi5:N (2.78) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30619 7pi5:N (2.78) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30620 7pi5:N (2.78) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30621 7pi5:N (2.78) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30622 7pi5:N (2.78) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30623 7pi5:N (2.78) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30624 7pi5:R (2.78) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30625 7pi5:R (2.78) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30626 7pi5:R (2.78) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30627 7pi5:R (2.78) BS07 CLA N/A GO:0009765 ... N/A 36799903
    30628 7pi5:R (2.78) BS08 CLA N/A GO:0009765 ... N/A 36799903
    30629 7pi5:R (2.78) BS09 CLA N/A GO:0009765 ... N/A 36799903
    30630 7pi5:R (2.78) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30631 7pi5:R (2.78) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30632 7pi5:S (2.78) BS01 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30633 7pi5:S (2.78) BS04 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30634 7pi5:S (2.78) BS05 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30635 7pi5:S (2.78) BS06 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30636 7pi5:S (2.78) BS10 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30637 7pi5:S (2.78) BS11 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30638 7pi5:S (2.78) BS12 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30639 7pi5:S (2.78) BS13 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30640 7pi5:S (2.78) BS14 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30641 7pi5:S (2.78) BS15 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30642 7pi5:S (2.78) BS16 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30643 7pi5:X (2.78) BS01 CLA ? GO:0009523 ... A0A7S3VKF3 36799903
    30644 7pi5:Y (2.78) BS04 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30645 7pi5:Y (2.78) BS05 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30646 7pi5:Y (2.78) BS06 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30647 7pi5:Y (2.78) BS10 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30648 7pi5:Y (2.78) BS12 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30649 7pi5:Y (2.78) BS13 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30650 7pi5:Y (2.78) BS14 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30651 7pi5:Y (2.78) BS15 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30652 7pi5:Y (2.78) BS16 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30653 7pi5:Z (2.78) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    30654 7pi5:a (2.78) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30655 7pi5:a (2.78) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30656 7pi5:a (2.78) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30657 7pi5:a (2.78) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30658 7pi5:a (2.78) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30659 7pi5:b (2.78) BS02 CLA ? GO:0009507 ... D0FY05 36799903
    30660 7pi5:b (2.78) BS03 CLA ? GO:0009507 ... D0FY05 36799903
    30661 7pi5:b (2.78) BS04 CLA ? GO:0009507 ... D0FY05 36799903
    30662 7pi5:b (2.78) BS05 CLA ? GO:0009507 ... D0FY05 36799903
    30663 7pi5:b (2.78) BS06 CLA ? GO:0009507 ... D0FY05 36799903
    30664 7pi5:b (2.78) BS07 CLA ? GO:0009507 ... D0FY05 36799903
    30665 7pi5:b (2.78) BS08 CLA ? GO:0009507 ... D0FY05 36799903
    30666 7pi5:b (2.78) BS09 CLA ? GO:0009507 ... D0FY05 36799903
    30667 7pi5:b (2.78) BS10 CLA ? GO:0009507 ... D0FY05 36799903
    30668 7pi5:b (2.78) BS11 CLA ? GO:0009507 ... D0FY05 36799903
    30669 7pi5:b (2.78) BS12 CLA ? GO:0009507 ... D0FY05 36799903
    30670 7pi5:b (2.78) BS13 CLA ? GO:0009507 ... D0FY05 36799903
    30671 7pi5:b (2.78) BS14 CLA ? GO:0009507 ... D0FY05 36799903
    30672 7pi5:b (2.78) BS15 CLA ? GO:0009507 ... D0FY05 36799903
    30673 7pi5:b (2.78) BS16 CLA ? GO:0009507 ... D0FY05 36799903
    30674 7pi5:b (2.78) BS17 CLA ? GO:0009507 ... D0FY05 36799903
    30675 7pi5:c (2.78) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    30676 7pi5:c (2.78) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    30677 7pi5:c (2.78) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    30678 7pi5:c (2.78) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    30679 7pi5:c (2.78) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    30680 7pi5:c (2.78) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    30681 7pi5:c (2.78) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    30682 7pi5:c (2.78) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    30683 7pi5:c (2.78) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    30684 7pi5:c (2.78) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    30685 7pi5:c (2.78) BS12 CLA ? GO:0005737 ... D0FXY3 36799903
    30686 7pi5:c (2.78) BS13 CLA ? GO:0005737 ... D0FXY3 36799903
    30687 7pi5:c (2.78) BS14 CLA ? GO:0005737 ... D0FXY3 36799903
    30688 7pi5:d (2.78) BS03 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30689 7pi5:d (2.78) BS04 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30690 7pi5:d (2.78) BS07 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30691 7pi5:d (2.78) BS08 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30692 7pi5:d (2.78) BS09 CLA 1.10.3.9 GO:0005506 ... A0A1C8XRK9 36799903
    30693 7pi5:g (2.78) BS02 CLA ? GO:0009765 ... A1XKU7 36799903
    30694 7pi5:g (2.78) BS03 CLA ? GO:0009765 ... A1XKU7 36799903
    30695 7pi5:g (2.78) BS04 CLA ? GO:0009765 ... A1XKU7 36799903
    30696 7pi5:g (2.78) BS10 CLA ? GO:0009765 ... A1XKU7 36799903
    30697 7pi5:g (2.78) BS11 CLA ? GO:0009765 ... A1XKU7 36799903
    30698 7pi5:g (2.78) BS12 CLA ? GO:0009765 ... A1XKU7 36799903
    30699 7pi5:g (2.78) BS13 CLA ? GO:0009765 ... A1XKU7 36799903
    30700 7pi5:g (2.78) BS14 CLA ? GO:0009765 ... A1XKU7 36799903
    30701 7pi5:h (2.78) BS01 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30702 7pi5:h (2.78) BS02 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30703 7pi5:h (2.78) BS03 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30704 7pi5:h (2.78) BS04 CLA ? GO:0009523 ... A0A1C8XRP3 36799903
    30705 7pi5:i (2.78) BS01 CLA ? GO:0005737 ... D0FXX5 36799903
    30706 7pi5:i (2.78) BS02 CLA ? GO:0005737 ... D0FXX5 36799903
    30707 7pi5:k (2.78) BS01 CLA ? GO:0009523 ... D0FXX2 36799903
    30708 7pi5:k (2.78) BS02 CLA ? GO:0009523 ... D0FXX2 36799903
    30709 7pi5:l (2.78) BS01 CLA ? GO:0005737 ... D0FY19 36799903
    30710 7pi5:m (2.78) BS01 CLA ? GO:0009523 ... D0FXZ3 36799903
    30711 7pi5:n (2.78) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30712 7pi5:n (2.78) BS03 CLA N/A GO:0009765 ... N/A 36799903
    30713 7pi5:n (2.78) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30714 7pi5:n (2.78) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30715 7pi5:n (2.78) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30716 7pi5:n (2.78) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30717 7pi5:n (2.78) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30718 7pi5:n (2.78) BS14 CLA N/A GO:0009765 ... N/A 36799903
    30719 7pi5:r (2.78) BS02 CLA N/A GO:0009765 ... N/A 36799903
    30720 7pi5:r (2.78) BS04 CLA N/A GO:0009765 ... N/A 36799903
    30721 7pi5:r (2.78) BS05 CLA N/A GO:0009765 ... N/A 36799903
    30722 7pi5:r (2.78) BS06 CLA N/A GO:0009765 ... N/A 36799903
    30723 7pi5:r (2.78) BS09 CLA N/A GO:0009765 ... N/A 36799903
    30724 7pi5:r (2.78) BS10 CLA N/A GO:0009765 ... N/A 36799903
    30725 7pi5:r (2.78) BS11 CLA N/A GO:0009765 ... N/A 36799903
    30726 7pi5:r (2.78) BS12 CLA N/A GO:0009765 ... N/A 36799903
    30727 7pi5:r (2.78) BS13 CLA N/A GO:0009765 ... N/A 36799903
    30728 7pi5:s (2.78) BS01 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30729 7pi5:s (2.78) BS04 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30730 7pi5:s (2.78) BS05 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30731 7pi5:s (2.78) BS06 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30732 7pi5:s (2.78) BS10 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30733 7pi5:s (2.78) BS11 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30734 7pi5:s (2.78) BS12 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30735 7pi5:s (2.78) BS13 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30736 7pi5:s (2.78) BS14 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30737 7pi5:s (2.78) BS15 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30738 7pi5:s (2.78) BS16 CLA ? GO:0009765 ... A0A7S3VRZ8 36799903
    30739 7pi5:x (2.78) BS01 CLA ? GO:0009523 ... A0A7S3VKF3 36799903
    30740 7pi5:y (2.78) BS01 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30741 7pi5:y (2.78) BS05 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30742 7pi5:y (2.78) BS06 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30743 7pi5:y (2.78) BS07 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30744 7pi5:y (2.78) BS11 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30745 7pi5:y (2.78) BS13 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30746 7pi5:y (2.78) BS14 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30747 7pi5:y (2.78) BS15 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30748 7pi5:y (2.78) BS16 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30749 7pi5:y (2.78) BS17 CLA ? GO:0009765 ... A0A6S8N9J6 36799903
    30750 7pi5:z (2.78) BS01 CLA ? GO:0009523 ... D0FXZ2 36799903
    30751 7pin:A (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30752 7pin:A (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30753 7pin:A (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30754 7pin:A (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30755 7pin:A (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30756 7pin:A1 (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30757 7pin:A1 (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30758 7pin:A1 (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30759 7pin:A1 (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30760 7pin:A1 (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30761 7pin:B (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30762 7pin:B (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30763 7pin:B (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30764 7pin:B (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30765 7pin:B (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30766 7pin:B (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30767 7pin:B (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30768 7pin:B (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30769 7pin:B (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30770 7pin:B (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30771 7pin:B (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30772 7pin:B (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30773 7pin:B (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30774 7pin:B (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30775 7pin:B (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30776 7pin:B (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30777 7pin:B1 (3.6) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30778 7pin:B1 (3.6) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30779 7pin:B1 (3.6) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30780 7pin:B1 (3.6) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30781 7pin:B1 (3.6) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30782 7pin:B1 (3.6) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30783 7pin:B1 (3.6) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30784 7pin:B1 (3.6) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30785 7pin:B1 (3.6) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30786 7pin:B1 (3.6) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30787 7pin:B1 (3.6) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30788 7pin:B1 (3.6) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30789 7pin:B1 (3.6) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30790 7pin:B1 (3.6) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30791 7pin:B1 (3.6) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30792 7pin:B1 (3.6) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30793 7pin:C (3.6) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    30794 7pin:C (3.6) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    30795 7pin:C (3.6) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    30796 7pin:C (3.6) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    30797 7pin:C (3.6) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    30798 7pin:C (3.6) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    30799 7pin:C (3.6) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    30800 7pin:C (3.6) BS09 CLA ? GO:0005737 ... D0FXY3 36799903

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218