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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30201 7oui:B (2.79) BS10 CLA ? GO:0003729 ... P56777 34330992
    30202 7oui:B (2.79) BS11 CLA ? GO:0003729 ... P56777 34330992
    30203 7oui:B (2.79) BS12 CLA ? GO:0003729 ... P56777 34330992
    30204 7oui:B (2.79) BS13 CLA ? GO:0003729 ... P56777 34330992
    30205 7oui:B (2.79) BS14 CLA ? GO:0003729 ... P56777 34330992
    30206 7oui:B (2.79) BS15 CLA ? GO:0003729 ... P56777 34330992
    30207 7oui:B (2.79) BS16 CLA ? GO:0003729 ... P56777 34330992
    30208 7oui:B (2.79) BS17 CLA ? GO:0003729 ... P56777 34330992
    30209 7oui:B (2.79) BS19 CLA ? GO:0003729 ... P56777 34330992
    30210 7oui:B (2.79) BS20 CLA ? GO:0003729 ... P56777 34330992
    30211 7oui:C (2.79) BS01 CLA ? GO:0003729 ... P56778 34330992
    30212 7oui:C (2.79) BS02 CLA ? GO:0003729 ... P56778 34330992
    30213 7oui:C (2.79) BS03 CLA ? GO:0003729 ... P56778 34330992
    30214 7oui:C (2.79) BS04 CLA ? GO:0003729 ... P56778 34330992
    30215 7oui:C (2.79) BS05 CLA ? GO:0003729 ... P56778 34330992
    30216 7oui:C (2.79) BS06 CLA ? GO:0003729 ... P56778 34330992
    30217 7oui:C (2.79) BS07 CLA ? GO:0003729 ... P56778 34330992
    30218 7oui:C (2.79) BS08 CLA ? GO:0003729 ... P56778 34330992
    30219 7oui:C (2.79) BS09 CLA ? GO:0003729 ... P56778 34330992
    30220 7oui:C (2.79) BS10 CLA ? GO:0003729 ... P56778 34330992
    30221 7oui:C (2.79) BS11 CLA ? GO:0003729 ... P56778 34330992
    30222 7oui:C (2.79) BS12 CLA ? GO:0003729 ... P56778 34330992
    30223 7oui:C (2.79) BS13 CLA ? GO:0003729 ... P56778 34330992
    30224 7oui:D (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30225 7oui:D (2.79) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30226 7oui:D (2.79) BS09 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30227 7oui:D (2.79) BS10 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30228 7oui:D (2.79) BS11 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30229 7oui:G (2.79) BS02 CLA ? GO:0009765 ... P04778 34330992
    30230 7oui:G (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    30231 7oui:G (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30232 7oui:G (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    30233 7oui:G (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    30234 7oui:G (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30235 7oui:G (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30236 7oui:H (2.79) BS01 CLA ? GO:0003729 ... P56780 34330992
    30237 7oui:H (2.79) BS02 CLA ? GO:0003729 ... P56780 34330992
    30238 7oui:H (2.79) BS03 CLA ? GO:0003729 ... P56780 34330992
    30239 7oui:I (2.79) BS01 CLA ? GO:0005737 ... P62100 34330992
    30240 7oui:K (2.79) BS01 CLA ? GO:0009523 ... P56782 34330992
    30241 7oui:K (2.79) BS02 CLA ? GO:0009523 ... P56782 34330992
    30242 7oui:N (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    30243 7oui:N (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30244 7oui:N (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    30245 7oui:N (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    30246 7oui:N (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30247 7oui:N (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30248 7oui:R (2.79) BS01 CLA ? GO:0009765 ... Q07473 34330992
    30249 7oui:R (2.79) BS02 CLA ? GO:0009765 ... Q07473 34330992
    30250 7oui:R (2.79) BS03 CLA ? GO:0009765 ... Q07473 34330992
    30251 7oui:R (2.79) BS04 CLA ? GO:0009765 ... Q07473 34330992
    30252 7oui:R (2.79) BS08 CLA ? GO:0009765 ... Q07473 34330992
    30253 7oui:R (2.79) BS09 CLA ? GO:0009765 ... Q07473 34330992
    30254 7oui:R (2.79) BS10 CLA ? GO:0009765 ... Q07473 34330992
    30255 7oui:R (2.79) BS11 CLA ? GO:0009765 ... Q07473 34330992
    30256 7oui:R (2.79) BS13 CLA ? GO:0009765 ... Q07473 34330992
    30257 7oui:S (2.79) BS01 CLA ? GO:0009765 ... Q9XF89 34330992
    30258 7oui:S (2.79) BS03 CLA ? GO:0009765 ... Q9XF89 34330992
    30259 7oui:S (2.79) BS04 CLA ? GO:0009765 ... Q9XF89 34330992
    30260 7oui:S (2.79) BS05 CLA ? GO:0009765 ... Q9XF89 34330992
    30261 7oui:S (2.79) BS09 CLA ? GO:0009765 ... Q9XF89 34330992
    30262 7oui:S (2.79) BS10 CLA ? GO:0009765 ... Q9XF89 34330992
    30263 7oui:S (2.79) BS11 CLA ? GO:0009765 ... Q9XF89 34330992
    30264 7oui:S (2.79) BS12 CLA ? GO:0009765 ... Q9XF89 34330992
    30265 7oui:S (2.79) BS13 CLA ? GO:0009765 ... Q9XF89 34330992
    30266 7oui:S (2.79) BS14 CLA ? GO:0009765 ... Q9XF89 34330992
    30267 7oui:W (2.79) BS01 CLA ? GO:0009507 ... Q39194 34330992
    30268 7oui:X (2.79) BS01 CLA ? GO:0009523 ... A0A7G2E9B1 34330992
    30269 7oui:Y (2.79) BS01 CLA ? GO:0009765 ... P04778 34330992
    30270 7oui:Y (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30271 7oui:Y (2.79) BS05 CLA ? GO:0009765 ... P04778 34330992
    30272 7oui:Y (2.79) BS06 CLA ? GO:0009765 ... P04778 34330992
    30273 7oui:Y (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30274 7oui:Y (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30275 7oui:Y (2.79) BS14 CLA ? GO:0009765 ... P04778 34330992
    30276 7oui:Y (2.79) BS15 CLA ? GO:0009765 ... P04778 34330992
    30277 7oui:Y (2.79) BS16 CLA ? GO:0009765 ... P04778 34330992
    30278 7oui:Z (2.79) BS01 CLA ? GO:0003674 ... P56790 34330992
    30279 7oui:a (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    30280 7oui:a (2.79) BS04 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    30281 7oui:a (2.79) BS07 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    30282 7oui:a (2.79) BS12 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    30283 7oui:a (2.79) BS13 CLA 1.10.3.9 GO:0003729 ... P83755 34330992
    30284 7oui:b (2.79) BS02 CLA ? GO:0003729 ... P56777 34330992
    30285 7oui:b (2.79) BS03 CLA ? GO:0003729 ... P56777 34330992
    30286 7oui:b (2.79) BS04 CLA ? GO:0003729 ... P56777 34330992
    30287 7oui:b (2.79) BS05 CLA ? GO:0003729 ... P56777 34330992
    30288 7oui:b (2.79) BS06 CLA ? GO:0003729 ... P56777 34330992
    30289 7oui:b (2.79) BS07 CLA ? GO:0003729 ... P56777 34330992
    30290 7oui:b (2.79) BS08 CLA ? GO:0003729 ... P56777 34330992
    30291 7oui:b (2.79) BS09 CLA ? GO:0003729 ... P56777 34330992
    30292 7oui:b (2.79) BS10 CLA ? GO:0003729 ... P56777 34330992
    30293 7oui:b (2.79) BS11 CLA ? GO:0003729 ... P56777 34330992
    30294 7oui:b (2.79) BS12 CLA ? GO:0003729 ... P56777 34330992
    30295 7oui:b (2.79) BS13 CLA ? GO:0003729 ... P56777 34330992
    30296 7oui:b (2.79) BS14 CLA ? GO:0003729 ... P56777 34330992
    30297 7oui:b (2.79) BS15 CLA ? GO:0003729 ... P56777 34330992
    30298 7oui:b (2.79) BS16 CLA ? GO:0003729 ... P56777 34330992
    30299 7oui:b (2.79) BS17 CLA ? GO:0003729 ... P56777 34330992
    30300 7oui:b (2.79) BS19 CLA ? GO:0003729 ... P56777 34330992
    30301 7oui:b (2.79) BS20 CLA ? GO:0003729 ... P56777 34330992
    30302 7oui:c (2.79) BS01 CLA ? GO:0003729 ... P56778 34330992
    30303 7oui:c (2.79) BS02 CLA ? GO:0003729 ... P56778 34330992
    30304 7oui:c (2.79) BS03 CLA ? GO:0003729 ... P56778 34330992
    30305 7oui:c (2.79) BS04 CLA ? GO:0003729 ... P56778 34330992
    30306 7oui:c (2.79) BS05 CLA ? GO:0003729 ... P56778 34330992
    30307 7oui:c (2.79) BS06 CLA ? GO:0003729 ... P56778 34330992
    30308 7oui:c (2.79) BS07 CLA ? GO:0003729 ... P56778 34330992
    30309 7oui:c (2.79) BS08 CLA ? GO:0003729 ... P56778 34330992
    30310 7oui:c (2.79) BS09 CLA ? GO:0003729 ... P56778 34330992
    30311 7oui:c (2.79) BS10 CLA ? GO:0003729 ... P56778 34330992
    30312 7oui:c (2.79) BS11 CLA ? GO:0003729 ... P56778 34330992
    30313 7oui:c (2.79) BS12 CLA ? GO:0003729 ... P56778 34330992
    30314 7oui:c (2.79) BS13 CLA ? GO:0003729 ... P56778 34330992
    30315 7oui:d (2.79) BS03 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30316 7oui:d (2.79) BS08 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30317 7oui:d (2.79) BS09 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30318 7oui:d (2.79) BS10 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30319 7oui:d (2.79) BS11 CLA 1.10.3.9 GO:0003729 ... P56761 34330992
    30320 7oui:g (2.79) BS02 CLA ? GO:0009765 ... P04778 34330992
    30321 7oui:g (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    30322 7oui:g (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30323 7oui:g (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    30324 7oui:g (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    30325 7oui:g (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30326 7oui:g (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30327 7oui:h (2.79) BS01 CLA ? GO:0003729 ... P56780 34330992
    30328 7oui:h (2.79) BS02 CLA ? GO:0003729 ... P56780 34330992
    30329 7oui:h (2.79) BS03 CLA ? GO:0003729 ... P56780 34330992
    30330 7oui:i (2.79) BS01 CLA ? GO:0005737 ... P62100 34330992
    30331 7oui:k (2.79) BS01 CLA ? GO:0009523 ... P56782 34330992
    30332 7oui:k (2.79) BS02 CLA ? GO:0009523 ... P56782 34330992
    30333 7oui:n (2.79) BS03 CLA ? GO:0009765 ... P04778 34330992
    30334 7oui:n (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30335 7oui:n (2.79) BS10 CLA ? GO:0009765 ... P04778 34330992
    30336 7oui:n (2.79) BS11 CLA ? GO:0009765 ... P04778 34330992
    30337 7oui:n (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30338 7oui:n (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30339 7oui:r (2.79) BS02 CLA ? GO:0009765 ... Q07473 34330992
    30340 7oui:r (2.79) BS03 CLA ? GO:0009765 ... Q07473 34330992
    30341 7oui:r (2.79) BS04 CLA ? GO:0009765 ... Q07473 34330992
    30342 7oui:r (2.79) BS05 CLA ? GO:0009765 ... Q07473 34330992
    30343 7oui:r (2.79) BS09 CLA ? GO:0009765 ... Q07473 34330992
    30344 7oui:r (2.79) BS10 CLA ? GO:0009765 ... Q07473 34330992
    30345 7oui:r (2.79) BS11 CLA ? GO:0009765 ... Q07473 34330992
    30346 7oui:r (2.79) BS12 CLA ? GO:0009765 ... Q07473 34330992
    30347 7oui:r (2.79) BS14 CLA ? GO:0009765 ... Q07473 34330992
    30348 7oui:s (2.79) BS01 CLA ? GO:0009765 ... Q9XF89 34330992
    30349 7oui:s (2.79) BS03 CLA ? GO:0009765 ... Q9XF89 34330992
    30350 7oui:s (2.79) BS04 CLA ? GO:0009765 ... Q9XF89 34330992
    30351 7oui:s (2.79) BS05 CLA ? GO:0009765 ... Q9XF89 34330992
    30352 7oui:s (2.79) BS09 CLA ? GO:0009765 ... Q9XF89 34330992
    30353 7oui:s (2.79) BS10 CLA ? GO:0009765 ... Q9XF89 34330992
    30354 7oui:s (2.79) BS11 CLA ? GO:0009765 ... Q9XF89 34330992
    30355 7oui:s (2.79) BS12 CLA ? GO:0009765 ... Q9XF89 34330992
    30356 7oui:s (2.79) BS13 CLA ? GO:0009765 ... Q9XF89 34330992
    30357 7oui:s (2.79) BS14 CLA ? GO:0009765 ... Q9XF89 34330992
    30358 7oui:w (2.79) BS01 CLA ? GO:0009507 ... Q39194 34330992
    30359 7oui:x (2.79) BS01 CLA ? GO:0009523 ... A0A7G2E9B1 34330992
    30360 7oui:y (2.79) BS01 CLA ? GO:0009765 ... P04778 34330992
    30361 7oui:y (2.79) BS04 CLA ? GO:0009765 ... P04778 34330992
    30362 7oui:y (2.79) BS05 CLA ? GO:0009765 ... P04778 34330992
    30363 7oui:y (2.79) BS06 CLA ? GO:0009765 ... P04778 34330992
    30364 7oui:y (2.79) BS12 CLA ? GO:0009765 ... P04778 34330992
    30365 7oui:y (2.79) BS13 CLA ? GO:0009765 ... P04778 34330992
    30366 7oui:y (2.79) BS14 CLA ? GO:0009765 ... P04778 34330992
    30367 7oui:y (2.79) BS15 CLA ? GO:0009765 ... P04778 34330992
    30368 7oui:y (2.79) BS16 CLA ? GO:0009765 ... P04778 34330992
    30369 7oui:z (2.79) BS01 CLA ? GO:0003674 ... P56790 34330992
    30370 7pi0:A (2.43) BS03 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30371 7pi0:A (2.43) BS04 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30372 7pi0:A (2.43) BS05 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30373 7pi0:A (2.43) BS07 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30374 7pi0:A (2.43) BS09 CLA 1.10.3.9 GO:0005506 ... D0FY08 36799903
    30375 7pi0:B (2.43) BS02 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30376 7pi0:B (2.43) BS03 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30377 7pi0:B (2.43) BS04 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30378 7pi0:B (2.43) BS05 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30379 7pi0:B (2.43) BS06 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30380 7pi0:B (2.43) BS07 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30381 7pi0:B (2.43) BS08 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30382 7pi0:B (2.43) BS09 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30383 7pi0:B (2.43) BS10 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30384 7pi0:B (2.43) BS11 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30385 7pi0:B (2.43) BS12 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30386 7pi0:B (2.43) BS13 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30387 7pi0:B (2.43) BS14 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30388 7pi0:B (2.43) BS15 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30389 7pi0:B (2.43) BS16 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30390 7pi0:B (2.43) BS17 CLA ? GO:0009507 ... A0A1C8XRM6 36799903
    30391 7pi0:C (2.43) BS02 CLA ? GO:0005737 ... D0FXY3 36799903
    30392 7pi0:C (2.43) BS03 CLA ? GO:0005737 ... D0FXY3 36799903
    30393 7pi0:C (2.43) BS04 CLA ? GO:0005737 ... D0FXY3 36799903
    30394 7pi0:C (2.43) BS05 CLA ? GO:0005737 ... D0FXY3 36799903
    30395 7pi0:C (2.43) BS06 CLA ? GO:0005737 ... D0FXY3 36799903
    30396 7pi0:C (2.43) BS07 CLA ? GO:0005737 ... D0FXY3 36799903
    30397 7pi0:C (2.43) BS08 CLA ? GO:0005737 ... D0FXY3 36799903
    30398 7pi0:C (2.43) BS09 CLA ? GO:0005737 ... D0FXY3 36799903
    30399 7pi0:C (2.43) BS10 CLA ? GO:0005737 ... D0FXY3 36799903
    30400 7pi0:C (2.43) BS11 CLA ? GO:0005737 ... D0FXY3 36799903
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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