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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    29801 7m78:B (3.0) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29802 7m78:B (3.0) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29803 7m78:B (3.0) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29804 7m78:B (3.0) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29805 7m78:B (3.0) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29806 7m78:B (3.0) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29807 7m78:B (3.0) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29808 7m78:B (3.0) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29809 7m78:B (3.0) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29810 7m78:B (3.0) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29811 7m78:B (3.0) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29812 7m78:B (3.0) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29813 7m78:B (3.0) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29814 7m78:B (3.0) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29815 7m78:B (3.0) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29816 7m78:B (3.0) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29817 7m78:B (3.0) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29818 7m78:B (3.0) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29819 7m78:B (3.0) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29820 7m78:B (3.0) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29821 7m78:B (3.0) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29822 7m78:B (3.0) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29823 7m78:B (3.0) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29824 7m78:B (3.0) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29825 7m78:B (3.0) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29826 7m78:B (3.0) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29827 7m78:B (3.0) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29828 7m78:B (3.0) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29829 7m78:B (3.0) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29830 7m78:B (3.0) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29831 7m78:B (3.0) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29832 7m78:B (3.0) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29833 7m78:B (3.0) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29834 7m78:B (3.0) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29835 7m78:B (3.0) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29836 7m78:B (3.0) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29837 7m78:B (3.0) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29838 7m78:B (3.0) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29839 7m78:B (3.0) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29840 7m78:B (3.0) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29841 7m78:B (3.0) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29842 7m78:B (3.0) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 34750381
    29843 7m78:F (3.0) BS02 CLA ? GO:0009522 ... P0A401 34750381
    29844 7m78:F (3.0) BS03 CLA ? GO:0009522 ... P0A401 34750381
    29845 7m78:F (3.0) BS04 CLA ? GO:0009522 ... P0A401 34750381
    29846 7m78:F (3.0) BS05 CLA ? GO:0009522 ... P0A401 34750381
    29847 7m78:F (3.0) BS06 CLA ? GO:0009522 ... P0A401 34750381
    29848 7m78:I (3.0) BS01 CLA ? GO:0009522 ... P0A427 34750381
    29849 7m78:I (3.0) BS02 CLA ? GO:0009522 ... P0A427 34750381
    29850 7m78:I (3.0) BS03 CLA ? GO:0009522 ... P0A427 34750381
    29851 7m78:J (3.0) BS01 CLA ? GO:0009522 ... P0A429 34750381
    29852 7m78:J (3.0) BS02 CLA ? GO:0009522 ... P0A429 34750381
    29853 7m78:J (3.0) BS03 CLA ? GO:0009522 ... P0A429 34750381
    29854 7m78:J (3.0) BS04 CLA ? GO:0009522 ... P0A429 34750381
    29855 7m78:J (3.0) BS05 CLA ? GO:0009522 ... P0A429 34750381
    29856 7m78:J (3.0) BS06 CLA ? GO:0009522 ... P0A429 34750381
    29857 7m78:K (3.0) BS01 CLA ? GO:0009522 ... P0A425 34750381
    29858 7m78:K (3.0) BS02 CLA ? GO:0009522 ... P0A425 34750381
    29859 7m78:L (3.0) BS01 CLA ? GO:0009522 ... Q8DGB4 34750381
    29860 7m78:L (3.0) BS02 CLA ? GO:0009522 ... Q8DGB4 34750381
    29861 7m78:L (3.0) BS03 CLA ? GO:0009522 ... Q8DGB4 34750381
    29862 7m78:L (3.0) BS04 CLA ? GO:0009522 ... Q8DGB4 34750381
    29863 7m78:L (3.0) BS06 CLA ? GO:0009522 ... Q8DGB4 34750381
    29864 7m78:L (3.0) BS07 CLA ? GO:0009522 ... Q8DGB4 34750381
    29865 7m78:L (3.0) BS08 CLA ? GO:0009522 ... Q8DGB4 34750381
    29866 7n8o:A (1.93) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29867 7n8o:A (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29868 7n8o:A (1.93) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29869 7n8o:A (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29870 7n8o:A (1.93) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29871 7n8o:B (1.93) BS01 CLA ? GO:0009521 ... P05429 34937700
    29872 7n8o:B (1.93) BS02 CLA ? GO:0009521 ... P05429 34937700
    29873 7n8o:B (1.93) BS03 CLA ? GO:0009521 ... P05429 34937700
    29874 7n8o:B (1.93) BS04 CLA ? GO:0009521 ... P05429 34937700
    29875 7n8o:B (1.93) BS05 CLA ? GO:0009521 ... P05429 34937700
    29876 7n8o:B (1.93) BS06 CLA ? GO:0009521 ... P05429 34937700
    29877 7n8o:B (1.93) BS07 CLA ? GO:0009521 ... P05429 34937700
    29878 7n8o:B (1.93) BS08 CLA ? GO:0009521 ... P05429 34937700
    29879 7n8o:B (1.93) BS09 CLA ? GO:0009521 ... P05429 34937700
    29880 7n8o:B (1.93) BS10 CLA ? GO:0009521 ... P05429 34937700
    29881 7n8o:B (1.93) BS11 CLA ? GO:0009521 ... P05429 34937700
    29882 7n8o:B (1.93) BS12 CLA ? GO:0009521 ... P05429 34937700
    29883 7n8o:B (1.93) BS13 CLA ? GO:0009521 ... P05429 34937700
    29884 7n8o:B (1.93) BS14 CLA ? GO:0009521 ... P05429 34937700
    29885 7n8o:B (1.93) BS15 CLA ? GO:0009521 ... P05429 34937700
    29886 7n8o:B (1.93) BS16 CLA ? GO:0009521 ... P05429 34937700
    29887 7n8o:C (1.93) BS02 CLA ? GO:0005737 ... P09193 34937700
    29888 7n8o:C (1.93) BS03 CLA ? GO:0005737 ... P09193 34937700
    29889 7n8o:C (1.93) BS04 CLA ? GO:0005737 ... P09193 34937700
    29890 7n8o:C (1.93) BS05 CLA ? GO:0005737 ... P09193 34937700
    29891 7n8o:C (1.93) BS06 CLA ? GO:0005737 ... P09193 34937700
    29892 7n8o:C (1.93) BS07 CLA ? GO:0005737 ... P09193 34937700
    29893 7n8o:C (1.93) BS08 CLA ? GO:0005737 ... P09193 34937700
    29894 7n8o:C (1.93) BS09 CLA ? GO:0005737 ... P09193 34937700
    29895 7n8o:C (1.93) BS10 CLA ? GO:0005737 ... P09193 34937700
    29896 7n8o:C (1.93) BS11 CLA ? GO:0005737 ... P09193 34937700
    29897 7n8o:C (1.93) BS12 CLA ? GO:0005737 ... P09193 34937700
    29898 7n8o:C (1.93) BS13 CLA ? GO:0005737 ... P09193 34937700
    29899 7n8o:C (1.93) BS14 CLA ? GO:0005737 ... P09193 34937700
    29900 7n8o:D (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29901 7n8o:D (1.93) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29902 7n8o:D (1.93) BS07 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29903 7n8o:D (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29904 7n8o:H (1.93) BS01 CLA ? GO:0009523 ... P14835 34937700
    29905 7n8o:H (1.93) BS02 CLA ? GO:0009523 ... P14835 34937700
    29906 7n8o:H (1.93) BS03 CLA ? GO:0009523 ... P14835 34937700
    29907 7n8o:I (1.93) BS01 CLA ? GO:0005737 ... Q54697 34937700
    29908 7n8o:K (1.93) BS01 CLA ? GO:0005737 ... P15819 34937700
    29909 7n8o:K (1.93) BS02 CLA ? GO:0005737 ... P15819 34937700
    29910 7n8o:X (1.93) BS01 CLA ? GO:0009523 ... P72575 34937700
    29911 7n8o:Z (1.93) BS01 CLA ? GO:0009523 ... P73528 34937700
    29912 7n8o:a (1.93) BS03 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29913 7n8o:a (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29914 7n8o:a (1.93) BS06 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29915 7n8o:a (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29916 7n8o:a (1.93) BS09 CLA 1.10.3.9 GO:0005506 ... P16033 34937700
    29917 7n8o:b (1.93) BS01 CLA ? GO:0009521 ... P05429 34937700
    29918 7n8o:b (1.93) BS02 CLA ? GO:0009521 ... P05429 34937700
    29919 7n8o:b (1.93) BS03 CLA ? GO:0009521 ... P05429 34937700
    29920 7n8o:b (1.93) BS04 CLA ? GO:0009521 ... P05429 34937700
    29921 7n8o:b (1.93) BS05 CLA ? GO:0009521 ... P05429 34937700
    29922 7n8o:b (1.93) BS06 CLA ? GO:0009521 ... P05429 34937700
    29923 7n8o:b (1.93) BS07 CLA ? GO:0009521 ... P05429 34937700
    29924 7n8o:b (1.93) BS08 CLA ? GO:0009521 ... P05429 34937700
    29925 7n8o:b (1.93) BS09 CLA ? GO:0009521 ... P05429 34937700
    29926 7n8o:b (1.93) BS10 CLA ? GO:0009521 ... P05429 34937700
    29927 7n8o:b (1.93) BS11 CLA ? GO:0009521 ... P05429 34937700
    29928 7n8o:b (1.93) BS12 CLA ? GO:0009521 ... P05429 34937700
    29929 7n8o:b (1.93) BS13 CLA ? GO:0009521 ... P05429 34937700
    29930 7n8o:b (1.93) BS14 CLA ? GO:0009521 ... P05429 34937700
    29931 7n8o:b (1.93) BS15 CLA ? GO:0009521 ... P05429 34937700
    29932 7n8o:b (1.93) BS16 CLA ? GO:0009521 ... P05429 34937700
    29933 7n8o:c (1.93) BS02 CLA ? GO:0005737 ... P09193 34937700
    29934 7n8o:c (1.93) BS03 CLA ? GO:0005737 ... P09193 34937700
    29935 7n8o:c (1.93) BS04 CLA ? GO:0005737 ... P09193 34937700
    29936 7n8o:c (1.93) BS05 CLA ? GO:0005737 ... P09193 34937700
    29937 7n8o:c (1.93) BS06 CLA ? GO:0005737 ... P09193 34937700
    29938 7n8o:c (1.93) BS07 CLA ? GO:0005737 ... P09193 34937700
    29939 7n8o:c (1.93) BS08 CLA ? GO:0005737 ... P09193 34937700
    29940 7n8o:c (1.93) BS09 CLA ? GO:0005737 ... P09193 34937700
    29941 7n8o:c (1.93) BS10 CLA ? GO:0005737 ... P09193 34937700
    29942 7n8o:c (1.93) BS11 CLA ? GO:0005737 ... P09193 34937700
    29943 7n8o:c (1.93) BS12 CLA ? GO:0005737 ... P09193 34937700
    29944 7n8o:c (1.93) BS13 CLA ? GO:0005737 ... P09193 34937700
    29945 7n8o:c (1.93) BS14 CLA ? GO:0005737 ... P09193 34937700
    29946 7n8o:d (1.93) BS04 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29947 7n8o:d (1.93) BS05 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29948 7n8o:d (1.93) BS07 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29949 7n8o:d (1.93) BS08 CLA 1.10.3.9 GO:0005506 ... P09192 34937700
    29950 7n8o:h (1.93) BS01 CLA ? GO:0009523 ... P14835 34937700
    29951 7n8o:h (1.93) BS02 CLA ? GO:0009523 ... P14835 34937700
    29952 7n8o:h (1.93) BS03 CLA ? GO:0009523 ... P14835 34937700
    29953 7n8o:i (1.93) BS01 CLA ? GO:0005737 ... Q54697 34937700
    29954 7n8o:k (1.93) BS01 CLA ? GO:0005737 ... P15819 34937700
    29955 7n8o:k (1.93) BS02 CLA ? GO:0005737 ... P15819 34937700
    29956 7n8o:x (1.93) BS01 CLA ? GO:0009523 ... P72575 34937700
    29957 7n8o:z (1.93) BS01 CLA ? GO:0009523 ... P73528 34937700
    29958 7nho:A (2.66) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    29959 7nho:A (2.66) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    29960 7nho:A (2.66) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    29961 7nho:A (2.66) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    29962 7nho:A (2.66) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 33846594
    29963 7nho:B (2.66) BS01 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29964 7nho:B (2.66) BS02 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29965 7nho:B (2.66) BS03 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29966 7nho:B (2.66) BS04 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29967 7nho:B (2.66) BS05 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29968 7nho:B (2.66) BS06 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29969 7nho:B (2.66) BS07 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29970 7nho:B (2.66) BS08 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29971 7nho:B (2.66) BS09 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29972 7nho:B (2.66) BS10 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29973 7nho:B (2.66) BS11 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29974 7nho:B (2.66) BS12 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29975 7nho:B (2.66) BS13 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29976 7nho:B (2.66) BS14 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29977 7nho:B (2.66) BS15 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29978 7nho:B (2.66) BS16 CLA ? GO:0009521 ... Q8DIQ1 33846594
    29979 7nho:C (2.66) BS01 CLA ? GO:0005737 ... Q8DIF8 33846594
    29980 7nho:C (2.66) BS02 CLA ? GO:0005737 ... Q8DIF8 33846594
    29981 7nho:C (2.66) BS03 CLA ? GO:0005737 ... Q8DIF8 33846594
    29982 7nho:C (2.66) BS04 CLA ? GO:0005737 ... Q8DIF8 33846594
    29983 7nho:C (2.66) BS05 CLA ? GO:0005737 ... Q8DIF8 33846594
    29984 7nho:C (2.66) BS06 CLA ? GO:0005737 ... Q8DIF8 33846594
    29985 7nho:C (2.66) BS07 CLA ? GO:0005737 ... Q8DIF8 33846594
    29986 7nho:C (2.66) BS08 CLA ? GO:0005737 ... Q8DIF8 33846594
    29987 7nho:C (2.66) BS09 CLA ? GO:0005737 ... Q8DIF8 33846594
    29988 7nho:C (2.66) BS10 CLA ? GO:0005737 ... Q8DIF8 33846594
    29989 7nho:C (2.66) BS11 CLA ? GO:0005737 ... Q8DIF8 33846594
    29990 7nho:C (2.66) BS12 CLA ? GO:0005737 ... Q8DIF8 33846594
    29991 7nho:C (2.66) BS13 CLA ? GO:0005737 ... Q8DIF8 33846594
    29992 7nho:D (2.66) BS03 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    29993 7nho:D (2.66) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    29994 7nho:D (2.66) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    29995 7nho:D (2.66) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    29996 7nho:D (2.66) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 33846594
    29997 7nho:H (2.66) BS01 CLA ? GO:0009523 ... Q8DJ43 33846594
    29998 7nho:H (2.66) BS02 CLA ? GO:0009523 ... Q8DJ43 33846594
    29999 7nho:I (2.66) BS01 CLA ? GO:0005737 ... Q8DJZ6 33846594
    30000 7nho:I (2.66) BS02 CLA ? GO:0005737 ... Q8DJZ6 33846594
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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