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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27401 7dz8:Y (3.16) BS16 CLA ? GO:0009416 ... Q93WL4 34239095
    27402 7dz8:Y (3.16) BS17 CLA ? GO:0009416 ... Q93WL4 34239095
    27403 7dz8:Y (3.16) BS18 CLA ? GO:0009416 ... Q93WL4 34239095
    27404 7dz8:Z (3.16) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27405 7dz8:Z (3.16) BS05 CLA ? GO:0009416 ... Q93WL4 34239095
    27406 7dz8:Z (3.16) BS06 CLA ? GO:0009416 ... Q93WL4 34239095
    27407 7dz8:Z (3.16) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27408 7dz8:Z (3.16) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27409 7dz8:Z (3.16) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27410 7dz8:Z (3.16) BS15 CLA ? GO:0009416 ... Q93WL4 34239095
    27411 7dz8:Z (3.16) BS16 CLA ? GO:0009416 ... Q93WL4 34239095
    27412 7dz8:a (3.16) BS01 CLA ? GO:0009416 ... Q05093 34239095
    27413 7dz8:a (3.16) BS02 CLA ? GO:0009416 ... Q05093 34239095
    27414 7dz8:a (3.16) BS03 CLA ? GO:0009416 ... Q05093 34239095
    27415 7dz8:a (3.16) BS04 CLA ? GO:0009416 ... Q05093 34239095
    27416 7dz8:a (3.16) BS05 CLA ? GO:0009416 ... Q05093 34239095
    27417 7dz8:a (3.16) BS06 CLA ? GO:0009416 ... Q05093 34239095
    27418 7dz8:a (3.16) BS07 CLA ? GO:0009416 ... Q05093 34239095
    27419 7dz8:a (3.16) BS08 CLA ? GO:0009416 ... Q05093 34239095
    27420 7dz8:a (3.16) BS09 CLA ? GO:0009416 ... Q05093 34239095
    27421 7dz8:a (3.16) BS10 CLA ? GO:0009416 ... Q05093 34239095
    27422 7dz8:a (3.16) BS11 CLA ? GO:0009416 ... Q05093 34239095
    27423 7dz8:a (3.16) BS12 CLA ? GO:0009416 ... Q05093 34239095
    27424 7dz8:a (3.16) BS13 CLA ? GO:0009416 ... Q05093 34239095
    27425 7dz8:a (3.16) BS14 CLA ? GO:0009416 ... Q05093 34239095
    27426 7e0h:X (3.75) BS02 CLA ? GO:0009416 ... Q93WE0 34239095
    27427 7e0h:X (3.75) BS03 CLA ? GO:0009416 ... Q93WE0 34239095
    27428 7e0h:X (3.75) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27429 7e0h:X (3.75) BS10 CLA ? GO:0009416 ... Q93WE0 34239095
    27430 7e0h:X (3.75) BS11 CLA ? GO:0009416 ... Q93WE0 34239095
    27431 7e0h:X (3.75) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27432 7e0h:X (3.75) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27433 7e0h:X (3.75) BS14 CLA ? GO:0009416 ... Q93WE0 34239095
    27434 7e0h:Y (3.75) BS01 CLA ? GO:0009416 ... Q93WL4 34239095
    27435 7e0h:Y (3.75) BS05 CLA ? GO:0009416 ... Q93WL4 34239095
    27436 7e0h:Y (3.75) BS06 CLA ? GO:0009416 ... Q93WL4 34239095
    27437 7e0h:Y (3.75) BS07 CLA ? GO:0009416 ... Q93WL4 34239095
    27438 7e0h:Y (3.75) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27439 7e0h:Y (3.75) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27440 7e0h:Y (3.75) BS15 CLA ? GO:0009416 ... Q93WL4 34239095
    27441 7e0h:Y (3.75) BS16 CLA ? GO:0009416 ... Q93WL4 34239095
    27442 7e0h:Y (3.75) BS17 CLA ? GO:0009416 ... Q93WL4 34239095
    27443 7e0h:Y (3.75) BS18 CLA ? GO:0009416 ... Q93WL4 34239095
    27444 7e0h:Z (3.75) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27445 7e0h:Z (3.75) BS05 CLA ? GO:0009416 ... Q93WL4 34239095
    27446 7e0h:Z (3.75) BS06 CLA ? GO:0009416 ... Q93WL4 34239095
    27447 7e0h:Z (3.75) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27448 7e0h:Z (3.75) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27449 7e0h:Z (3.75) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27450 7e0h:Z (3.75) BS15 CLA ? GO:0009416 ... Q93WL4 34239095
    27451 7e0h:Z (3.75) BS16 CLA ? GO:0009416 ... Q93WL4 34239095
    27452 7e0i:U (3.53) BS02 CLA ? GO:0009416 ... Q93WL4 34239095
    27453 7e0i:U (3.53) BS03 CLA ? GO:0009416 ... Q93WL4 34239095
    27454 7e0i:U (3.53) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27455 7e0i:U (3.53) BS10 CLA ? GO:0009416 ... Q93WL4 34239095
    27456 7e0i:U (3.53) BS11 CLA ? GO:0009416 ... Q93WL4 34239095
    27457 7e0i:U (3.53) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27458 7e0i:U (3.53) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27459 7e0i:U (3.53) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27460 7e0i:V (3.53) BS04 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27461 7e0i:V (3.53) BS05 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27462 7e0i:V (3.53) BS06 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27463 7e0i:V (3.53) BS12 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27464 7e0i:V (3.53) BS13 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27465 7e0i:V (3.53) BS14 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27466 7e0i:V (3.53) BS15 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27467 7e0i:V (3.53) BS16 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27468 7e0i:W (3.53) BS03 CLA ? GO:0009416 ... Q93WE0 34239095
    27469 7e0i:W (3.53) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27470 7e0i:W (3.53) BS05 CLA ? GO:0009416 ... Q93WE0 34239095
    27471 7e0i:W (3.53) BS11 CLA ? GO:0009416 ... Q93WE0 34239095
    27472 7e0i:W (3.53) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27473 7e0i:W (3.53) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27474 7e0i:W (3.53) BS14 CLA ? GO:0009416 ... Q93WE0 34239095
    27475 7e0i:W (3.53) BS15 CLA ? GO:0009416 ... Q93WE0 34239095
    27476 7e0j:X (3.13) BS02 CLA ? GO:0009416 ... Q93WE0 34239095
    27477 7e0j:X (3.13) BS03 CLA ? GO:0009416 ... Q93WE0 34239095
    27478 7e0j:X (3.13) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27479 7e0j:X (3.13) BS09 CLA ? GO:0009416 ... Q93WE0 34239095
    27480 7e0j:X (3.13) BS10 CLA ? GO:0009416 ... Q93WE0 34239095
    27481 7e0j:X (3.13) BS11 CLA ? GO:0009416 ... Q93WE0 34239095
    27482 7e0j:X (3.13) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27483 7e0j:X (3.13) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27484 7e0j:X (3.13) BS15 CLA ? GO:0009416 ... Q93WE0 34239095
    27485 7e0j:Y (3.13) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27486 7e0j:Y (3.13) BS05 CLA ? GO:0009416 ... Q93WL4 34239095
    27487 7e0j:Y (3.13) BS06 CLA ? GO:0009416 ... Q93WL4 34239095
    27488 7e0j:Y (3.13) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27489 7e0j:Y (3.13) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27490 7e0j:Y (3.13) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27491 7e0j:Y (3.13) BS15 CLA ? GO:0009416 ... Q93WL4 34239095
    27492 7e0j:Y (3.13) BS16 CLA ? GO:0009416 ... Q93WL4 34239095
    27493 7e0j:Z (3.13) BS04 CLA ? GO:0009416 ... Q93VE0 34239095
    27494 7e0j:Z (3.13) BS05 CLA ? GO:0009416 ... Q93VE0 34239095
    27495 7e0j:Z (3.13) BS06 CLA ? GO:0009416 ... Q93VE0 34239095
    27496 7e0j:Z (3.13) BS12 CLA ? GO:0009416 ... Q93VE0 34239095
    27497 7e0j:Z (3.13) BS13 CLA ? GO:0009416 ... Q93VE0 34239095
    27498 7e0j:Z (3.13) BS14 CLA ? GO:0009416 ... Q93VE0 34239095
    27499 7e0j:Z (3.13) BS15 CLA ? GO:0009416 ... Q93VE0 34239095
    27500 7e0j:Z (3.13) BS16 CLA ? GO:0009416 ... Q93VE0 34239095
    27501 7e0k:U (3.09) BS02 CLA ? GO:0009416 ... Q93WL4 34239095
    27502 7e0k:U (3.09) BS03 CLA ? GO:0009416 ... Q93WL4 34239095
    27503 7e0k:U (3.09) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27504 7e0k:U (3.09) BS10 CLA ? GO:0009416 ... Q93WL4 34239095
    27505 7e0k:U (3.09) BS11 CLA ? GO:0009416 ... Q93WL4 34239095
    27506 7e0k:U (3.09) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27507 7e0k:U (3.09) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27508 7e0k:U (3.09) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27509 7e0k:V (3.09) BS04 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27510 7e0k:V (3.09) BS05 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27511 7e0k:V (3.09) BS11 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27512 7e0k:V (3.09) BS12 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27513 7e0k:V (3.09) BS13 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27514 7e0k:V (3.09) BS14 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27515 7e0k:V (3.09) BS15 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27516 7e0k:W (3.09) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27517 7e0k:W (3.09) BS05 CLA ? GO:0009416 ... Q93WE0 34239095
    27518 7e0k:W (3.09) BS06 CLA ? GO:0009416 ... Q93WE0 34239095
    27519 7e0k:W (3.09) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27520 7e0k:W (3.09) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27521 7e0k:W (3.09) BS14 CLA ? GO:0009416 ... Q93WE0 34239095
    27522 7e0k:W (3.09) BS15 CLA ? GO:0009416 ... Q93WE0 34239095
    27523 7e0k:W (3.09) BS16 CLA ? GO:0009416 ... Q93WE0 34239095
    27524 7eda:A (2.78) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27525 7eda:A (2.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27526 7eda:A (2.78) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27527 7eda:A (2.78) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27528 7eda:A (2.78) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27529 7eda:A (2.78) BS12 CLA 1.10.3.9 GO:0005506 ... P51765 34216574
    27530 7eda:B (2.78) BS01 CLA ? GO:0009521 ... D0VWR1 34216574
    27531 7eda:B (2.78) BS02 CLA ? GO:0009521 ... D0VWR1 34216574
    27532 7eda:B (2.78) BS03 CLA ? GO:0009521 ... D0VWR1 34216574
    27533 7eda:B (2.78) BS04 CLA ? GO:0009521 ... D0VWR1 34216574
    27534 7eda:B (2.78) BS05 CLA ? GO:0009521 ... D0VWR1 34216574
    27535 7eda:B (2.78) BS06 CLA ? GO:0009521 ... D0VWR1 34216574
    27536 7eda:B (2.78) BS07 CLA ? GO:0009521 ... D0VWR1 34216574
    27537 7eda:B (2.78) BS08 CLA ? GO:0009521 ... D0VWR1 34216574
    27538 7eda:B (2.78) BS09 CLA ? GO:0009521 ... D0VWR1 34216574
    27539 7eda:B (2.78) BS10 CLA ? GO:0009521 ... D0VWR1 34216574
    27540 7eda:B (2.78) BS11 CLA ? GO:0009521 ... D0VWR1 34216574
    27541 7eda:B (2.78) BS12 CLA ? GO:0009521 ... D0VWR1 34216574
    27542 7eda:B (2.78) BS13 CLA ? GO:0009521 ... D0VWR1 34216574
    27543 7eda:B (2.78) BS14 CLA ? GO:0009521 ... D0VWR1 34216574
    27544 7eda:B (2.78) BS15 CLA ? GO:0009521 ... D0VWR1 34216574
    27545 7eda:B (2.78) BS16 CLA ? GO:0009521 ... D0VWR1 34216574
    27546 7eda:C (2.78) BS02 CLA ? GO:0005737 ... D0VWR7 34216574
    27547 7eda:C (2.78) BS03 CLA ? GO:0005737 ... D0VWR7 34216574
    27548 7eda:C (2.78) BS04 CLA ? GO:0005737 ... D0VWR7 34216574
    27549 7eda:C (2.78) BS05 CLA ? GO:0005737 ... D0VWR7 34216574
    27550 7eda:C (2.78) BS06 CLA ? GO:0005737 ... D0VWR7 34216574
    27551 7eda:C (2.78) BS07 CLA ? GO:0005737 ... D0VWR7 34216574
    27552 7eda:C (2.78) BS08 CLA ? GO:0005737 ... D0VWR7 34216574
    27553 7eda:C (2.78) BS09 CLA ? GO:0005737 ... D0VWR7 34216574
    27554 7eda:C (2.78) BS10 CLA ? GO:0005737 ... D0VWR7 34216574
    27555 7eda:C (2.78) BS11 CLA ? GO:0005737 ... D0VWR7 34216574
    27556 7eda:C (2.78) BS12 CLA ? GO:0005737 ... D0VWR7 34216574
    27557 7eda:C (2.78) BS13 CLA ? GO:0005737 ... D0VWR7 34216574
    27558 7eda:C (2.78) BS14 CLA ? GO:0005737 ... D0VWR7 34216574
    27559 7eda:D (2.78) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27560 7eda:D (2.78) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27561 7eda:D (2.78) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27562 7eda:D (2.78) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27563 7eda:D (2.78) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27564 7eda:D (2.78) BS11 CLA 1.10.3.9 GO:0009523 ... D0VWR8 34216574
    27565 7eda:H (2.78) BS01 CLA ? GO:0009523 ... P19052 34216574
    27566 7eda:H (2.78) BS02 CLA ? GO:0009523 ... P19052 34216574
    27567 7eda:H (2.78) BS03 CLA ? GO:0009523 ... P19052 34216574
    27568 7eda:H (2.78) BS04 CLA ? GO:0009523 ... P19052 34216574
    27569 7eda:I (2.78) BS01 CLA ? GO:0005737 ... P12240 34216574
    27570 7eda:I (2.78) BS02 CLA ? GO:0005737 ... P12240 34216574
    27571 7eda:K (2.78) BS02 CLA ? GO:0005737 ... P19054 34216574
    27572 7eda:K (2.78) BS03 CLA ? GO:0005737 ... P19054 34216574
    27573 7eda:Z (2.78) BS02 CLA ? GO:0009523 ... D0VWR5 34216574
    27574 7ew6:1 (3.4) BS01 CLA ? GO:0009416 ... Q9SDM1 34879391
    27575 7ew6:1 (3.4) BS02 CLA ? GO:0009416 ... Q9SDM1 34879391
    27576 7ew6:1 (3.4) BS03 CLA ? GO:0009416 ... Q9SDM1 34879391
    27577 7ew6:1 (3.4) BS04 CLA ? GO:0009416 ... Q9SDM1 34879391
    27578 7ew6:1 (3.4) BS05 CLA ? GO:0009416 ... Q9SDM1 34879391
    27579 7ew6:1 (3.4) BS07 CLA ? GO:0009416 ... Q9SDM1 34879391
    27580 7ew6:1 (3.4) BS09 CLA ? GO:0009416 ... Q9SDM1 34879391
    27581 7ew6:2 (3.4) BS01 CLA ? GO:0009416 ... Q43485 34879391
    27582 7ew6:2 (3.4) BS02 CLA ? GO:0009416 ... Q43485 34879391
    27583 7ew6:2 (3.4) BS03 CLA ? GO:0009416 ... Q43485 34879391
    27584 7ew6:2 (3.4) BS04 CLA ? GO:0009416 ... Q43485 34879391
    27585 7ew6:2 (3.4) BS05 CLA ? GO:0009416 ... Q43485 34879391
    27586 7ew6:2 (3.4) BS06 CLA ? GO:0009416 ... Q43485 34879391
    27587 7ew6:2 (3.4) BS07 CLA ? GO:0009416 ... Q43485 34879391
    27588 7ew6:2 (3.4) BS10 CLA ? GO:0009416 ... Q43485 34879391
    27589 7ew6:3 (3.4) BS01 CLA ? GO:0009507 ... F2DAN8 34879391
    27590 7ew6:3 (3.4) BS03 CLA ? GO:0009507 ... F2DAN8 34879391
    27591 7ew6:3 (3.4) BS04 CLA ? GO:0009507 ... F2DAN8 34879391
    27592 7ew6:3 (3.4) BS05 CLA ? GO:0009507 ... F2DAN8 34879391
    27593 7ew6:3 (3.4) BS06 CLA ? GO:0009507 ... F2DAN8 34879391
    27594 7ew6:3 (3.4) BS07 CLA ? GO:0009507 ... F2DAN8 34879391
    27595 7ew6:3 (3.4) BS08 CLA ? GO:0009507 ... F2DAN8 34879391
    27596 7ew6:3 (3.4) BS09 CLA ? GO:0009507 ... F2DAN8 34879391
    27597 7ew6:3 (3.4) BS11 CLA ? GO:0009507 ... F2DAN8 34879391
    27598 7ew6:3 (3.4) BS12 CLA ? GO:0009507 ... F2DAN8 34879391
    27599 7ew6:3 (3.4) BS13 CLA ? GO:0009507 ... F2DAN8 34879391
    27600 7ew6:5 (3.4) BS02 CLA ? GO:0009507 ... F2CW18 34879391
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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