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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 7dz8:8 (3.16) BS14 CLA ? GO:0009416 ... Q75VY7 34239095
    27202 7dz8:8 (3.16) BS15 CLA ? GO:0009416 ... Q75VY7 34239095
    27203 7dz8:9 (3.16) BS01 CLA ? GO:0009416 ... A8ITV3 34239095
    27204 7dz8:9 (3.16) BS02 CLA ? GO:0009416 ... A8ITV3 34239095
    27205 7dz8:9 (3.16) BS03 CLA ? GO:0009416 ... A8ITV3 34239095
    27206 7dz8:9 (3.16) BS04 CLA ? GO:0009416 ... A8ITV3 34239095
    27207 7dz8:9 (3.16) BS05 CLA ? GO:0009416 ... A8ITV3 34239095
    27208 7dz8:9 (3.16) BS06 CLA ? GO:0009416 ... A8ITV3 34239095
    27209 7dz8:9 (3.16) BS07 CLA ? GO:0009416 ... A8ITV3 34239095
    27210 7dz8:9 (3.16) BS08 CLA ? GO:0009416 ... A8ITV3 34239095
    27211 7dz8:9 (3.16) BS09 CLA ? GO:0009416 ... A8ITV3 34239095
    27212 7dz8:9 (3.16) BS10 CLA ? GO:0009416 ... A8ITV3 34239095
    27213 7dz8:9 (3.16) BS11 CLA ? GO:0009416 ... A8ITV3 34239095
    27214 7dz8:9 (3.16) BS12 CLA ? GO:0009416 ... A8ITV3 34239095
    27215 7dz8:9 (3.16) BS13 CLA ? GO:0009416 ... A8ITV3 34239095
    27216 7dz8:9 (3.16) BS14 CLA ? GO:0009416 ... A8ITV3 34239095
    27217 7dz8:9 (3.16) BS15 CLA ? GO:0009416 ... A8ITV3 34239095
    27218 7dz8:A (3.16) BS01 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27219 7dz8:A (3.16) BS02 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27220 7dz8:A (3.16) BS03 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27221 7dz8:A (3.16) BS04 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27222 7dz8:A (3.16) BS05 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27223 7dz8:A (3.16) BS06 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27224 7dz8:A (3.16) BS07 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27225 7dz8:A (3.16) BS08 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27226 7dz8:A (3.16) BS09 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27227 7dz8:A (3.16) BS10 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27228 7dz8:A (3.16) BS11 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27229 7dz8:A (3.16) BS12 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27230 7dz8:A (3.16) BS13 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27231 7dz8:A (3.16) BS14 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27232 7dz8:A (3.16) BS15 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27233 7dz8:A (3.16) BS16 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27234 7dz8:A (3.16) BS17 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27235 7dz8:A (3.16) BS18 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27236 7dz8:A (3.16) BS19 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27237 7dz8:A (3.16) BS20 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27238 7dz8:A (3.16) BS21 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27239 7dz8:A (3.16) BS22 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27240 7dz8:A (3.16) BS23 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27241 7dz8:A (3.16) BS24 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27242 7dz8:A (3.16) BS25 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27243 7dz8:A (3.16) BS26 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27244 7dz8:A (3.16) BS27 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27245 7dz8:A (3.16) BS28 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27246 7dz8:A (3.16) BS29 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27247 7dz8:A (3.16) BS30 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27248 7dz8:A (3.16) BS31 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27249 7dz8:A (3.16) BS32 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27250 7dz8:A (3.16) BS33 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27251 7dz8:A (3.16) BS34 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27252 7dz8:A (3.16) BS35 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27253 7dz8:A (3.16) BS36 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27254 7dz8:A (3.16) BS37 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27255 7dz8:A (3.16) BS38 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27256 7dz8:A (3.16) BS39 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27257 7dz8:A (3.16) BS40 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27258 7dz8:A (3.16) BS41 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27259 7dz8:A (3.16) BS42 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27260 7dz8:A (3.16) BS43 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27261 7dz8:A (3.16) BS45 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27262 7dz8:A (3.16) BS47 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27263 7dz8:A (3.16) BS48 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27264 7dz8:A (3.16) BS49 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27265 7dz8:A (3.16) BS50 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27266 7dz8:A (3.16) BS51 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27267 7dz8:A (3.16) BS52 CLA 1.97.1.12 GO:0000287 ... P12154 34239095
    27268 7dz8:B (3.16) BS01 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27269 7dz8:B (3.16) BS02 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27270 7dz8:B (3.16) BS03 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27271 7dz8:B (3.16) BS04 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27272 7dz8:B (3.16) BS05 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27273 7dz8:B (3.16) BS06 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27274 7dz8:B (3.16) BS08 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27275 7dz8:B (3.16) BS09 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27276 7dz8:B (3.16) BS10 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27277 7dz8:B (3.16) BS11 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27278 7dz8:B (3.16) BS12 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27279 7dz8:B (3.16) BS13 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27280 7dz8:B (3.16) BS14 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27281 7dz8:B (3.16) BS15 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27282 7dz8:B (3.16) BS16 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27283 7dz8:B (3.16) BS17 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27284 7dz8:B (3.16) BS18 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27285 7dz8:B (3.16) BS19 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27286 7dz8:B (3.16) BS20 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27287 7dz8:B (3.16) BS21 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27288 7dz8:B (3.16) BS22 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27289 7dz8:B (3.16) BS23 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27290 7dz8:B (3.16) BS24 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27291 7dz8:B (3.16) BS25 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27292 7dz8:B (3.16) BS26 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27293 7dz8:B (3.16) BS27 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27294 7dz8:B (3.16) BS28 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27295 7dz8:B (3.16) BS29 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27296 7dz8:B (3.16) BS30 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27297 7dz8:B (3.16) BS31 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27298 7dz8:B (3.16) BS32 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27299 7dz8:B (3.16) BS33 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27300 7dz8:B (3.16) BS34 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27301 7dz8:B (3.16) BS35 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27302 7dz8:B (3.16) BS36 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27303 7dz8:B (3.16) BS37 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27304 7dz8:B (3.16) BS38 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27305 7dz8:B (3.16) BS39 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27306 7dz8:B (3.16) BS40 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27307 7dz8:B (3.16) BS41 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27308 7dz8:B (3.16) BS42 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27309 7dz8:B (3.16) BS43 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27310 7dz8:B (3.16) BS44 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27311 7dz8:B (3.16) BS45 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27312 7dz8:B (3.16) BS46 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27313 7dz8:B (3.16) BS47 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27314 7dz8:B (3.16) BS48 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27315 7dz8:B (3.16) BS50 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27316 7dz8:B (3.16) BS51 CLA 1.97.1.12 GO:0000287 ... P09144 34239095
    27317 7dz8:F (3.16) BS01 CLA ? GO:0005515 ... P12356 34239095
    27318 7dz8:F (3.16) BS02 CLA ? GO:0005515 ... P12356 34239095
    27319 7dz8:F (3.16) BS03 CLA ? GO:0005515 ... P12356 34239095
    27320 7dz8:F (3.16) BS04 CLA ? GO:0005515 ... P12356 34239095
    27321 7dz8:F (3.16) BS05 CLA ? GO:0005515 ... P12356 34239095
    27322 7dz8:F (3.16) BS06 CLA ? GO:0005515 ... P12356 34239095
    27323 7dz8:G (3.16) BS01 CLA ? GO:0009507 ... P14224 34239095
    27324 7dz8:G (3.16) BS02 CLA ? GO:0009507 ... P14224 34239095
    27325 7dz8:G (3.16) BS03 CLA ? GO:0009507 ... P14224 34239095
    27326 7dz8:G (3.16) BS04 CLA ? GO:0009507 ... P14224 34239095
    27327 7dz8:H (3.16) BS01 CLA ? GO:0009507 ... P13352 34239095
    27328 7dz8:H (3.16) BS02 CLA ? GO:0009507 ... P13352 34239095
    27329 7dz8:H (3.16) BS03 CLA ? GO:0009507 ... P13352 34239095
    27330 7dz8:H (3.16) BS04 CLA ? GO:0009507 ... P13352 34239095
    27331 7dz8:H (3.16) BS05 CLA ? GO:0009507 ... P13352 34239095
    27332 7dz8:I (3.16) BS01 CLA ? GO:0009522 ... A8IFG7 34239095
    27333 7dz8:I (3.16) BS02 CLA ? GO:0009522 ... A8IFG7 34239095
    27334 7dz8:I (3.16) BS03 CLA ? GO:0009522 ... A8IFG7 34239095
    27335 7dz8:J (3.16) BS01 CLA ? GO:0009507 ... P59777 34239095
    27336 7dz8:J (3.16) BS02 CLA ? GO:0009507 ... P59777 34239095
    27337 7dz8:J (3.16) BS03 CLA ? GO:0009507 ... P59777 34239095
    27338 7dz8:J (3.16) BS04 CLA ? GO:0009507 ... P59777 34239095
    27339 7dz8:J (3.16) BS05 CLA ? GO:0009507 ... P59777 34239095
    27340 7dz8:K (3.16) BS01 CLA ? GO:0009507 ... P14225 34239095
    27341 7dz8:K (3.16) BS02 CLA ? GO:0009507 ... P14225 34239095
    27342 7dz8:K (3.16) BS03 CLA ? GO:0009507 ... P14225 34239095
    27343 7dz8:K (3.16) BS04 CLA ? GO:0009507 ... P14225 34239095
    27344 7dz8:K (3.16) BS05 CLA ? GO:0009507 ... P14225 34239095
    27345 7dz8:L (3.16) BS01 CLA ? GO:0009522 ... A8IL32 34239095
    27346 7dz8:L (3.16) BS02 CLA ? GO:0009522 ... A8IL32 34239095
    27347 7dz8:L (3.16) BS03 CLA ? GO:0009522 ... A8IL32 34239095
    27348 7dz8:L (3.16) BS04 CLA ? GO:0009522 ... A8IL32 34239095
    27349 7dz8:L (3.16) BS05 CLA ? GO:0009522 ... A8IL32 34239095
    27350 7dz8:L (3.16) BS06 CLA ? GO:0009522 ... A8IL32 34239095
    27351 7dz8:L (3.16) BS07 CLA ? GO:0009522 ... A8IL32 34239095
    27352 7dz8:L (3.16) BS08 CLA ? GO:0009522 ... A8IL32 34239095
    27353 7dz8:L (3.16) BS09 CLA ? GO:0009522 ... A8IL32 34239095
    27354 7dz8:L (3.16) BS10 CLA ? GO:0009522 ... A8IL32 34239095
    27355 7dz8:O (3.16) BS01 CLA ? N/A A8JCL6 34239095
    27356 7dz8:O (3.16) BS02 CLA ? N/A A8JCL6 34239095
    27357 7dz8:O (3.16) BS03 CLA ? N/A A8JCL6 34239095
    27358 7dz8:O (3.16) BS04 CLA ? N/A A8JCL6 34239095
    27359 7dz8:O (3.16) BS05 CLA ? N/A A8JCL6 34239095
    27360 7dz8:O (3.16) BS06 CLA ? N/A A8JCL6 34239095
    27361 7dz8:O (3.16) BS07 CLA ? N/A A8JCL6 34239095
    27362 7dz8:U (3.16) BS02 CLA ? GO:0009416 ... Q93WL4 34239095
    27363 7dz8:U (3.16) BS03 CLA ? GO:0009416 ... Q93WL4 34239095
    27364 7dz8:U (3.16) BS04 CLA ? GO:0009416 ... Q93WL4 34239095
    27365 7dz8:U (3.16) BS10 CLA ? GO:0009416 ... Q93WL4 34239095
    27366 7dz8:U (3.16) BS11 CLA ? GO:0009416 ... Q93WL4 34239095
    27367 7dz8:U (3.16) BS12 CLA ? GO:0009416 ... Q93WL4 34239095
    27368 7dz8:U (3.16) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27369 7dz8:U (3.16) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27370 7dz8:V (3.16) BS04 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27371 7dz8:V (3.16) BS05 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27372 7dz8:V (3.16) BS06 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27373 7dz8:V (3.16) BS12 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27374 7dz8:V (3.16) BS13 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27375 7dz8:V (3.16) BS14 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27376 7dz8:V (3.16) BS15 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27377 7dz8:V (3.16) BS16 CLA ? GO:0009416 ... Q9ZSJ4 34239095
    27378 7dz8:W (3.16) BS03 CLA ? GO:0009416 ... Q93WE0 34239095
    27379 7dz8:W (3.16) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27380 7dz8:W (3.16) BS05 CLA ? GO:0009416 ... Q93WE0 34239095
    27381 7dz8:W (3.16) BS11 CLA ? GO:0009416 ... Q93WE0 34239095
    27382 7dz8:W (3.16) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27383 7dz8:W (3.16) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27384 7dz8:W (3.16) BS14 CLA ? GO:0009416 ... Q93WE0 34239095
    27385 7dz8:W (3.16) BS15 CLA ? GO:0009416 ... Q93WE0 34239095
    27386 7dz8:X (3.16) BS02 CLA ? GO:0009416 ... Q93WE0 34239095
    27387 7dz8:X (3.16) BS03 CLA ? GO:0009416 ... Q93WE0 34239095
    27388 7dz8:X (3.16) BS04 CLA ? GO:0009416 ... Q93WE0 34239095
    27389 7dz8:X (3.16) BS10 CLA ? GO:0009416 ... Q93WE0 34239095
    27390 7dz8:X (3.16) BS11 CLA ? GO:0009416 ... Q93WE0 34239095
    27391 7dz8:X (3.16) BS12 CLA ? GO:0009416 ... Q93WE0 34239095
    27392 7dz8:X (3.16) BS13 CLA ? GO:0009416 ... Q93WE0 34239095
    27393 7dz8:X (3.16) BS14 CLA ? GO:0009416 ... Q93WE0 34239095
    27394 7dz8:Y (3.16) BS01 CLA ? GO:0009416 ... Q93WL4 34239095
    27395 7dz8:Y (3.16) BS05 CLA ? GO:0009416 ... Q93WL4 34239095
    27396 7dz8:Y (3.16) BS06 CLA ? GO:0009416 ... Q93WL4 34239095
    27397 7dz8:Y (3.16) BS07 CLA ? GO:0009416 ... Q93WL4 34239095
    27398 7dz8:Y (3.16) BS13 CLA ? GO:0009416 ... Q93WL4 34239095
    27399 7dz8:Y (3.16) BS14 CLA ? GO:0009416 ... Q93WL4 34239095
    27400 7dz8:Y (3.16) BS15 CLA ? GO:0009416 ... Q93WL4 34239095

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218