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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25201 7cou:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 33953929
    25202 7cou:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 33953929
    25203 7cou:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 33953929
    25204 7cou:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 33953929
    25205 7cou:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 33953929
    25206 7cou:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 33953929
    25207 7cou:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 33953929
    25208 7cou:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 33953929
    25209 7cou:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 33953929
    25210 7cou:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 33953929
    25211 7cou:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 33953929
    25212 7cou:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 33953929
    25213 7cou:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 33953929
    25214 7cou:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 33953929
    25215 7cou:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 33953929
    25216 7cou:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 33953929
    25217 7cou:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 33953929
    25218 7cou:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 33953929
    25219 7cou:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25220 7cou:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25221 7cou:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25222 7cou:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25223 7cou:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25224 7cou:H (2.25) BS01 CLA ? GO:0009523 ... P19052 33953929
    25225 7cou:H (2.25) BS02 CLA ? GO:0009523 ... P19052 33953929
    25226 7cou:H (2.25) BS03 CLA ? GO:0009523 ... P19052 33953929
    25227 7cou:I (2.25) BS01 CLA ? GO:0005737 ... P12240 33953929
    25228 7cou:K (2.25) BS02 CLA ? GO:0005737 ... P19054 33953929
    25229 7cou:K (2.25) BS03 CLA ? GO:0005737 ... P19054 33953929
    25230 7cou:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 33953929
    25231 7cou:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 33953929
    25232 7cou:a (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 33953929
    25233 7cou:a (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 33953929
    25234 7cou:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 33953929
    25235 7cou:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 33953929
    25236 7cou:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 33953929
    25237 7cou:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 33953929
    25238 7cou:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 33953929
    25239 7cou:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 33953929
    25240 7cou:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 33953929
    25241 7cou:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 33953929
    25242 7cou:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 33953929
    25243 7cou:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 33953929
    25244 7cou:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 33953929
    25245 7cou:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 33953929
    25246 7cou:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 33953929
    25247 7cou:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 33953929
    25248 7cou:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 33953929
    25249 7cou:b (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 33953929
    25250 7cou:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 33953929
    25251 7cou:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 33953929
    25252 7cou:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 33953929
    25253 7cou:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 33953929
    25254 7cou:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 33953929
    25255 7cou:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 33953929
    25256 7cou:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 33953929
    25257 7cou:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 33953929
    25258 7cou:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 33953929
    25259 7cou:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 33953929
    25260 7cou:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 33953929
    25261 7cou:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 33953929
    25262 7cou:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 33953929
    25263 7cou:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25264 7cou:d (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25265 7cou:d (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25266 7cou:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25267 7cou:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33953929
    25268 7cou:h (2.25) BS01 CLA ? GO:0009523 ... P19052 33953929
    25269 7cou:h (2.25) BS02 CLA ? GO:0009523 ... P19052 33953929
    25270 7cou:h (2.25) BS03 CLA ? GO:0009523 ... P19052 33953929
    25271 7cou:i (2.25) BS01 CLA ? GO:0005737 ... P12240 33953929
    25272 7cou:k (2.25) BS02 CLA ? GO:0005737 ... P19054 33953929
    25273 7cou:z (2.25) BS02 CLA ? GO:0009523 ... D0VWR5 33953929
    25274 7czl:A (3.78) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25275 7czl:A (3.78) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25276 7czl:A (3.78) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25277 7czl:A (3.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25278 7czl:A (3.78) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25279 7czl:B (3.78) BS01 CLA ? GO:0009521 ... D0VWR1 33495333
    25280 7czl:B (3.78) BS02 CLA ? GO:0009521 ... D0VWR1 33495333
    25281 7czl:B (3.78) BS03 CLA ? GO:0009521 ... D0VWR1 33495333
    25282 7czl:B (3.78) BS04 CLA ? GO:0009521 ... D0VWR1 33495333
    25283 7czl:B (3.78) BS05 CLA ? GO:0009521 ... D0VWR1 33495333
    25284 7czl:B (3.78) BS06 CLA ? GO:0009521 ... D0VWR1 33495333
    25285 7czl:B (3.78) BS07 CLA ? GO:0009521 ... D0VWR1 33495333
    25286 7czl:B (3.78) BS08 CLA ? GO:0009521 ... D0VWR1 33495333
    25287 7czl:B (3.78) BS09 CLA ? GO:0009521 ... D0VWR1 33495333
    25288 7czl:B (3.78) BS10 CLA ? GO:0009521 ... D0VWR1 33495333
    25289 7czl:B (3.78) BS11 CLA ? GO:0009521 ... D0VWR1 33495333
    25290 7czl:B (3.78) BS12 CLA ? GO:0009521 ... D0VWR1 33495333
    25291 7czl:B (3.78) BS13 CLA ? GO:0009521 ... D0VWR1 33495333
    25292 7czl:B (3.78) BS14 CLA ? GO:0009521 ... D0VWR1 33495333
    25293 7czl:B (3.78) BS15 CLA ? GO:0009521 ... D0VWR1 33495333
    25294 7czl:B (3.78) BS16 CLA ? GO:0009521 ... D0VWR1 33495333
    25295 7czl:C (3.78) BS01 CLA ? GO:0005737 ... D0VWR7 33495333
    25296 7czl:C (3.78) BS02 CLA ? GO:0005737 ... D0VWR7 33495333
    25297 7czl:C (3.78) BS03 CLA ? GO:0005737 ... D0VWR7 33495333
    25298 7czl:C (3.78) BS04 CLA ? GO:0005737 ... D0VWR7 33495333
    25299 7czl:C (3.78) BS05 CLA ? GO:0005737 ... D0VWR7 33495333
    25300 7czl:C (3.78) BS06 CLA ? GO:0005737 ... D0VWR7 33495333
    25301 7czl:C (3.78) BS07 CLA ? GO:0005737 ... D0VWR7 33495333
    25302 7czl:C (3.78) BS08 CLA ? GO:0005737 ... D0VWR7 33495333
    25303 7czl:C (3.78) BS09 CLA ? GO:0005737 ... D0VWR7 33495333
    25304 7czl:C (3.78) BS10 CLA ? GO:0005737 ... D0VWR7 33495333
    25305 7czl:C (3.78) BS11 CLA ? GO:0005737 ... D0VWR7 33495333
    25306 7czl:C (3.78) BS12 CLA ? GO:0005737 ... D0VWR7 33495333
    25307 7czl:C (3.78) BS13 CLA ? GO:0005737 ... D0VWR7 33495333
    25308 7czl:D (3.78) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25309 7czl:D (3.78) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25310 7czl:D (3.78) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25311 7czl:D (3.78) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25312 7czl:H (3.78) BS01 CLA ? GO:0009523 ... P19052 33495333
    25313 7czl:H (3.78) BS02 CLA ? GO:0009523 ... P19052 33495333
    25314 7czl:I (3.78) BS01 CLA ? GO:0009523 ... P12240 33495333
    25315 7czl:K (3.78) BS02 CLA ? GO:0005737 ... P19054 33495333
    25316 7czl:L (3.78) BS01 CLA ? GO:0005737 ... P12241 33495333
    25317 7czl:a (3.78) BS01 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25318 7czl:a (3.78) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25319 7czl:a (3.78) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25320 7czl:a (3.78) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25321 7czl:a (3.78) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 33495333
    25322 7czl:b (3.78) BS01 CLA ? GO:0009521 ... D0VWR1 33495333
    25323 7czl:b (3.78) BS02 CLA ? GO:0009521 ... D0VWR1 33495333
    25324 7czl:b (3.78) BS03 CLA ? GO:0009521 ... D0VWR1 33495333
    25325 7czl:b (3.78) BS04 CLA ? GO:0009521 ... D0VWR1 33495333
    25326 7czl:b (3.78) BS05 CLA ? GO:0009521 ... D0VWR1 33495333
    25327 7czl:b (3.78) BS06 CLA ? GO:0009521 ... D0VWR1 33495333
    25328 7czl:b (3.78) BS07 CLA ? GO:0009521 ... D0VWR1 33495333
    25329 7czl:b (3.78) BS08 CLA ? GO:0009521 ... D0VWR1 33495333
    25330 7czl:b (3.78) BS09 CLA ? GO:0009521 ... D0VWR1 33495333
    25331 7czl:b (3.78) BS10 CLA ? GO:0009521 ... D0VWR1 33495333
    25332 7czl:b (3.78) BS11 CLA ? GO:0009521 ... D0VWR1 33495333
    25333 7czl:b (3.78) BS12 CLA ? GO:0009521 ... D0VWR1 33495333
    25334 7czl:b (3.78) BS13 CLA ? GO:0009521 ... D0VWR1 33495333
    25335 7czl:b (3.78) BS14 CLA ? GO:0009521 ... D0VWR1 33495333
    25336 7czl:b (3.78) BS15 CLA ? GO:0009521 ... D0VWR1 33495333
    25337 7czl:b (3.78) BS16 CLA ? GO:0009521 ... D0VWR1 33495333
    25338 7czl:c (3.78) BS01 CLA ? GO:0005737 ... D0VWR7 33495333
    25339 7czl:c (3.78) BS02 CLA ? GO:0005737 ... D0VWR7 33495333
    25340 7czl:c (3.78) BS03 CLA ? GO:0005737 ... D0VWR7 33495333
    25341 7czl:c (3.78) BS04 CLA ? GO:0005737 ... D0VWR7 33495333
    25342 7czl:c (3.78) BS05 CLA ? GO:0005737 ... D0VWR7 33495333
    25343 7czl:c (3.78) BS06 CLA ? GO:0005737 ... D0VWR7 33495333
    25344 7czl:c (3.78) BS07 CLA ? GO:0005737 ... D0VWR7 33495333
    25345 7czl:c (3.78) BS08 CLA ? GO:0005737 ... D0VWR7 33495333
    25346 7czl:c (3.78) BS09 CLA ? GO:0005737 ... D0VWR7 33495333
    25347 7czl:c (3.78) BS10 CLA ? GO:0005737 ... D0VWR7 33495333
    25348 7czl:c (3.78) BS11 CLA ? GO:0005737 ... D0VWR7 33495333
    25349 7czl:c (3.78) BS12 CLA ? GO:0005737 ... D0VWR7 33495333
    25350 7czl:c (3.78) BS13 CLA ? GO:0005737 ... D0VWR7 33495333
    25351 7czl:d (3.78) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25352 7czl:d (3.78) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25353 7czl:d (3.78) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25354 7czl:d (3.78) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25355 7czl:d (3.78) BS10 CLA 1.10.3.9 GO:0009523 ... D0VWR8 33495333
    25356 7czl:h (3.78) BS01 CLA ? GO:0009523 ... P19052 33495333
    25357 7czl:h (3.78) BS02 CLA ? GO:0009523 ... P19052 33495333
    25358 7czl:h (3.78) BS03 CLA ? GO:0009523 ... P19052 33495333
    25359 7czl:i (3.78) BS01 CLA ? GO:0009523 ... P12240 33495333
    25360 7czl:i (3.78) BS02 CLA ? GO:0009523 ... P12240 33495333
    25361 7czl:k (3.78) BS02 CLA ? GO:0005737 ... P19054 33495333
    25362 7czl:l (3.78) BS01 CLA ? GO:0005737 ... P12241 33495333
    25363 7d0j:1 (3.42) BS02 CLA ? GO:0009765 ... Q05093 33597543
    25364 7d0j:1 (3.42) BS03 CLA ? GO:0009765 ... Q05093 33597543
    25365 7d0j:1 (3.42) BS04 CLA ? GO:0009765 ... Q05093 33597543
    25366 7d0j:1 (3.42) BS05 CLA ? GO:0009765 ... Q05093 33597543
    25367 7d0j:1 (3.42) BS07 CLA ? GO:0009765 ... Q05093 33597543
    25368 7d0j:1 (3.42) BS08 CLA ? GO:0009765 ... Q05093 33597543
    25369 7d0j:1 (3.42) BS09 CLA ? GO:0009765 ... Q05093 33597543
    25370 7d0j:1 (3.42) BS10 CLA ? GO:0009765 ... Q05093 33597543
    25371 7d0j:1 (3.42) BS11 CLA ? GO:0009765 ... Q05093 33597543
    25372 7d0j:1 (3.42) BS12 CLA ? GO:0009765 ... Q05093 33597543
    25373 7d0j:1 (3.42) BS13 CLA ? GO:0009765 ... Q05093 33597543
    25374 7d0j:2 (3.42) BS01 CLA ? GO:0009765 ... A8IKC8 33597543
    25375 7d0j:2 (3.42) BS02 CLA ? GO:0009765 ... A8IKC8 33597543
    25376 7d0j:2 (3.42) BS03 CLA ? GO:0009765 ... A8IKC8 33597543
    25377 7d0j:2 (3.42) BS04 CLA ? GO:0009765 ... A8IKC8 33597543
    25378 7d0j:2 (3.42) BS05 CLA ? GO:0009765 ... A8IKC8 33597543
    25379 7d0j:2 (3.42) BS06 CLA ? GO:0009765 ... A8IKC8 33597543
    25380 7d0j:2 (3.42) BS07 CLA ? GO:0009765 ... A8IKC8 33597543
    25381 7d0j:2 (3.42) BS08 CLA ? GO:0009765 ... A8IKC8 33597543
    25382 7d0j:2 (3.42) BS09 CLA ? GO:0009765 ... A8IKC8 33597543
    25383 7d0j:2 (3.42) BS10 CLA ? GO:0009765 ... A8IKC8 33597543
    25384 7d0j:2 (3.42) BS11 CLA ? GO:0009765 ... A8IKC8 33597543
    25385 7d0j:2 (3.42) BS12 CLA ? GO:0009765 ... A8IKC8 33597543
    25386 7d0j:3 (3.42) BS01 CLA N/A GO:0009765 ... N/A 33597543
    25387 7d0j:3 (3.42) BS02 CLA N/A GO:0009765 ... N/A 33597543
    25388 7d0j:3 (3.42) BS03 CLA N/A GO:0009765 ... N/A 33597543
    25389 7d0j:3 (3.42) BS04 CLA N/A GO:0009765 ... N/A 33597543
    25390 7d0j:3 (3.42) BS05 CLA N/A GO:0009765 ... N/A 33597543
    25391 7d0j:3 (3.42) BS06 CLA N/A GO:0009765 ... N/A 33597543
    25392 7d0j:3 (3.42) BS08 CLA N/A GO:0009765 ... N/A 33597543
    25393 7d0j:3 (3.42) BS09 CLA N/A GO:0009765 ... N/A 33597543
    25394 7d0j:3 (3.42) BS10 CLA N/A GO:0009765 ... N/A 33597543
    25395 7d0j:3 (3.42) BS11 CLA N/A GO:0009765 ... N/A 33597543
    25396 7d0j:3 (3.42) BS12 CLA N/A GO:0009765 ... N/A 33597543
    25397 7d0j:3 (3.42) BS13 CLA N/A GO:0009765 ... N/A 33597543
    25398 7d0j:3 (3.42) BS14 CLA N/A GO:0009765 ... N/A 33597543
    25399 7d0j:4 (3.42) BS01 CLA ? GO:0009765 ... Q75VZ0 33597543
    25400 7d0j:4 (3.42) BS02 CLA ? GO:0009765 ... Q75VZ0 33597543
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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