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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2akr:A (1.9) BS01 CIS ? N/A P11609 16314439
    2 2akr:C (1.9) BS01 CIS ? N/A P11609 16314439
    3 3ric:A (2.1) BS01 CIS 2.7.7.7 GO:0005515 ... Q9NZD2 22078563
    4 3rzn:A (1.1) BS01 CIS ? GO:0005515 ... Q9NZD2 22078563
    5 3s0i:A (1.5) BS01 CIS ? GO:0005515 ... Q9NZD2 22078563
    6 4apq:A (3.0) BS01 CIS ? N/A P11609 N/A
    7 4apq:C (3.0) BS01 CIS ? N/A P01848 N/A
    8 4ei5:A (3.1) BS01 CIS ? N/A P11609 22820603
    9 4ei5:D (3.1) BS01 CIS N/A N/A N/A 22820603
    10 4ei5:E (3.1) BS01 CIS ? N/A P11609 22820603
    11 4ei5:H (3.1) BS01 CIS N/A N/A N/A 22820603
    12 4gjq:A (2.0) BS01 CIS ? GO:0005515 ... Q9NZD2 23519669
    13 4gjq:B (2.0) BS01 CIS ? GO:0005515 ... Q9NZD2 23519669
    14 4gjq:B (2.0) BS02 CIS ? GO:0005515 ... Q9NZD2 23519669
    15 4mng:A (3.0058) BS01 CIS ? N/A P11609
    P15813    		 24239091
    16 4mng:C (3.0058) BS01 CIS ? N/A P11609
    P15813    		 24239091
    17 4mng:E (3.0058) BS01 CIS ? N/A Q6PJ56 24239091
    18 4mng:F (3.0058) BS01 CIS ? N/A Q6PJ56 24239091
    19 4mq7:A (2.6032) BS01 CIS ? N/A P11609
    P15813    		 24239091
    20 7ryn:A (2.7) BS01 CIS ? N/A P06126 35790773
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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