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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3339 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 4xk8:3 (2.8) BS10 CHL ? GO:0009765 ... Q32904 26023133
    202 4xk8:4 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    203 4xk8:4 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    204 4xk8:4 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    205 4xk8:4 (2.8) BS09 CHL ? GO:0009765 ... Q9SQL2 26023133
    206 4xk8:4 (2.8) BS17 CHL ? GO:0009765 ... Q9SQL2 26023133
    207 4xk8:6 (2.8) BS02 CHL ? GO:0009765 ... Q01667 26023133
    208 4xk8:6 (2.8) BS07 CHL ? GO:0009765 ... Q01667 26023133
    209 4xk8:7 (2.8) BS01 CHL ? GO:0009765 ... Q41038 26023133
    210 4xk8:7 (2.8) BS05 CHL ? GO:0009765 ... Q41038 26023133
    211 4xk8:7 (2.8) BS06 CHL ? GO:0009765 ... Q41038 26023133
    212 4xk8:7 (2.8) BS07 CHL ? GO:0009765 ... Q41038 26023133
    213 4xk8:7 (2.8) BS14 CHL ? GO:0009765 ... Q41038 26023133
    214 4xk8:8 (2.8) BS03 CHL ? GO:0009765 ... Q32904 26023133
    215 4xk8:8 (2.8) BS09 CHL ? GO:0009765 ... Q32904 26023133
    216 4xk8:9 (2.8) BS01 CHL ? GO:0009765 ... Q9SQL2 26023133
    217 4xk8:9 (2.8) BS06 CHL ? GO:0009765 ... Q9SQL2 26023133
    218 4xk8:9 (2.8) BS07 CHL ? GO:0009765 ... Q9SQL2 26023133
    219 4xk8:9 (2.8) BS08 CHL ? GO:0009765 ... Q9SQL2 26023133
    220 4xk8:9 (2.8) BS16 CHL ? GO:0009765 ... Q9SQL2 26023133
    221 4y28:1 (2.8) BS09 CHL ? GO:0009416 ... E1C9L2 26076232
    222 4y28:1 (2.8) BS10 CHL ? GO:0009416 ... E1C9L2 26076232
    223 4y28:2 (2.8) BS09 CHL ? GO:0009416 ... Q41038 26076232
    224 4y28:2 (2.8) BS10 CHL ? GO:0009416 ... Q41038 26076232
    225 4y28:2 (2.8) BS12 CHL ? GO:0009416 ... Q41038 26076232
    226 4y28:3 (2.8) BS13 CHL ? GO:0009416 ... Q32904 26076232
    227 4y28:4 (2.8) BS10 CHL ? GO:0009416 ... Q9SQL2 26076232
    228 4y28:4 (2.8) BS11 CHL ? GO:0009416 ... Q9SQL2 26076232
    229 4y28:4 (2.8) BS13 CHL ? GO:0009416 ... Q9SQL2 26076232
    230 4y28:4 (2.8) BS16 CHL ? GO:0009416 ... Q9SQL2 26076232
    231 5l8r:1 (2.6) BS09 CHL ? GO:0009416 ... E1C9L2 28248295
    232 5l8r:1 (2.6) BS11 CHL ? GO:0009416 ... E1C9L2 28248295
    233 5l8r:1 (2.6) BS14 CHL ? GO:0009416 ... E1C9L2 28248295
    234 5l8r:2 (2.6) BS09 CHL ? GO:0009416 ... Q41038 28248295
    235 5l8r:2 (2.6) BS10 CHL ? GO:0009416 ... Q41038 28248295
    236 5l8r:2 (2.6) BS12 CHL ? GO:0009416 ... Q41038 28248295
    237 5l8r:2 (2.6) BS13 CHL ? GO:0009416 ... Q41038 28248295
    238 5l8r:2 (2.6) BS14 CHL ? GO:0009416 ... Q41038 28248295
    239 5l8r:3 (2.6) BS02 CHL ? GO:0009416 ... Q32904 28248295
    240 5l8r:3 (2.6) BS12 CHL ? GO:0009416 ... Q32904 28248295
    241 5l8r:4 (2.6) BS02 CHL ? GO:0009765 ... Q9SQL2 28248295
    242 5l8r:4 (2.6) BS12 CHL ? GO:0009765 ... Q9SQL2 28248295
    243 5l8r:4 (2.6) BS13 CHL ? GO:0009765 ... Q9SQL2 28248295
    244 5l8r:4 (2.6) BS15 CHL ? GO:0009765 ... Q9SQL2 28248295
    245 5l8r:4 (2.6) BS16 CHL ? GO:0009765 ... Q9SQL2 28248295
    246 5mdx:1 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    247 5mdx:1 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    248 5mdx:1 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    249 5mdx:1 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    250 5mdx:1 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    251 5mdx:1 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    252 5mdx:1 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    253 5mdx:1 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    254 5mdx:2 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    255 5mdx:2 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    256 5mdx:2 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    257 5mdx:2 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    258 5mdx:3 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    259 5mdx:3 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    260 5mdx:3 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    261 5mdx:3 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    262 5mdx:4 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    263 5mdx:4 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    264 5mdx:4 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    265 5mdx:4 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    266 5mdx:5 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    267 5mdx:5 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    268 5mdx:5 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    269 5mdx:5 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    270 5mdx:5 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    271 5mdx:5 (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    272 5mdx:5 (5.3) BS14 CHL ? GO:0009765 ... P04778 28604725
    273 5mdx:5 (5.3) BS15 CHL ? GO:0009765 ... P04778 28604725
    274 5mdx:6 (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    275 5mdx:6 (5.3) BS04 CHL ? GO:0009765 ... P04778 28604725
    276 5mdx:6 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    277 5mdx:6 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    278 5mdx:7 (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    279 5mdx:7 (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    280 5mdx:7 (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    281 5mdx:7 (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    282 5mdx:8 (5.3) BS02 CHL ? GO:0009765 ... Q9LMQ2 28604725
    283 5mdx:8 (5.3) BS06 CHL ? GO:0009765 ... Q9LMQ2 28604725
    284 5mdx:8 (5.3) BS07 CHL ? GO:0009765 ... Q9LMQ2 28604725
    285 5mdx:8 (5.3) BS08 CHL ? GO:0009765 ... Q9LMQ2 28604725
    286 5mdx:G (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    287 5mdx:G (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    288 5mdx:G (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    289 5mdx:G (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    290 5mdx:G (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    291 5mdx:N (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    292 5mdx:N (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    293 5mdx:N (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    294 5mdx:N (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    295 5mdx:N (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    296 5mdx:R (5.3) BS04 CHL ? GO:0009765 ... Q07473 28604725
    297 5mdx:R (5.3) BS05 CHL ? GO:0009765 ... Q07473 28604725
    298 5mdx:R (5.3) BS06 CHL ? GO:0009765 ... Q07473 28604725
    299 5mdx:R (5.3) BS14 CHL ? GO:0009765 ... Q07473 28604725
    300 5mdx:S (5.3) BS02 CHL ? GO:0009765 ... Q9XF89 28604725
    301 5mdx:S (5.3) BS06 CHL ? GO:0009765 ... Q9XF89 28604725
    302 5mdx:S (5.3) BS07 CHL ? GO:0009765 ... Q9XF89 28604725
    303 5mdx:Y (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    304 5mdx:Y (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    305 5mdx:Y (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    306 5mdx:Y (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    307 5mdx:Y (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    308 5mdx:Y (5.3) BS09 CHL ? GO:0009765 ... P04778 28604725
    309 5mdx:Y (5.3) BS10 CHL ? GO:0009765 ... P04778 28604725
    310 5mdx:g (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    311 5mdx:g (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    312 5mdx:g (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    313 5mdx:g (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    314 5mdx:g (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    315 5mdx:n (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    316 5mdx:n (5.3) BS05 CHL ? GO:0009765 ... P04778 28604725
    317 5mdx:n (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    318 5mdx:n (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    319 5mdx:n (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    320 5mdx:r (5.3) BS04 CHL ? GO:0009765 ... Q07473 28604725
    321 5mdx:r (5.3) BS05 CHL ? GO:0009765 ... Q07473 28604725
    322 5mdx:r (5.3) BS06 CHL ? GO:0009765 ... Q07473 28604725
    323 5mdx:r (5.3) BS14 CHL ? GO:0009765 ... Q07473 28604725
    324 5mdx:s (5.3) BS02 CHL ? GO:0009765 ... Q9XF89 28604725
    325 5mdx:s (5.3) BS06 CHL ? GO:0009765 ... Q9XF89 28604725
    326 5mdx:s (5.3) BS07 CHL ? GO:0009765 ... Q9XF89 28604725
    327 5mdx:y (5.3) BS01 CHL ? GO:0009765 ... P04778 28604725
    328 5mdx:y (5.3) BS02 CHL ? GO:0009765 ... P04778 28604725
    329 5mdx:y (5.3) BS06 CHL ? GO:0009765 ... P04778 28604725
    330 5mdx:y (5.3) BS07 CHL ? GO:0009765 ... P04778 28604725
    331 5mdx:y (5.3) BS08 CHL ? GO:0009765 ... P04778 28604725
    332 5mdx:y (5.3) BS09 CHL ? GO:0009765 ... P04778 28604725
    333 5mdx:y (5.3) BS10 CHL ? GO:0009765 ... P04778 28604725
    334 5xnl:1 (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    335 5xnl:1 (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    336 5xnl:1 (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    337 5xnl:1 (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    338 5xnl:1 (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    339 5xnl:1 (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    340 5xnl:1 (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    341 5xnl:2 (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    342 5xnl:2 (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    343 5xnl:2 (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    344 5xnl:2 (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    345 5xnl:2 (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    346 5xnl:2 (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    347 5xnl:2 (2.7) BS15 CHL ? GO:0009765 ... P27490 28839073
    348 5xnl:2 (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    349 5xnl:3 (2.7) BS01 CHL ? GO:0009416 ... Q04918 28839073
    350 5xnl:3 (2.7) BS02 CHL ? GO:0009416 ... Q04918 28839073
    351 5xnl:3 (2.7) BS03 CHL ? GO:0009416 ... Q04918 28839073
    352 5xnl:3 (2.7) BS07 CHL ? GO:0009416 ... Q04918 28839073
    353 5xnl:3 (2.7) BS08 CHL ? GO:0009416 ... Q04918 28839073
    354 5xnl:3 (2.7) BS09 CHL ? GO:0009416 ... Q04918 28839073
    355 5xnl:3 (2.7) BS10 CHL ? GO:0009416 ... Q04918 28839073
    356 5xnl:3 (2.7) BS11 CHL ? GO:0009416 ... Q04918 28839073
    357 5xnl:4 (2.7) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    358 5xnl:4 (2.7) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    359 5xnl:4 (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    360 5xnl:4 (2.7) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    361 5xnl:4 (2.7) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    362 5xnl:5 (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    363 5xnl:5 (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    364 5xnl:5 (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    365 5xnl:5 (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    366 5xnl:5 (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    367 5xnl:5 (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    368 5xnl:5 (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    369 5xnl:6 (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    370 5xnl:6 (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    371 5xnl:6 (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    372 5xnl:6 (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    373 5xnl:6 (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    374 5xnl:6 (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    375 5xnl:6 (2.7) BS15 CHL ? GO:0009765 ... P27490 28839073
    376 5xnl:6 (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    377 5xnl:7 (2.7) BS01 CHL ? GO:0009416 ... Q04918 28839073
    378 5xnl:7 (2.7) BS02 CHL ? GO:0009416 ... Q04918 28839073
    379 5xnl:7 (2.7) BS03 CHL ? GO:0009416 ... Q04918 28839073
    380 5xnl:7 (2.7) BS07 CHL ? GO:0009416 ... Q04918 28839073
    381 5xnl:7 (2.7) BS08 CHL ? GO:0009416 ... Q04918 28839073
    382 5xnl:7 (2.7) BS09 CHL ? GO:0009416 ... Q04918 28839073
    383 5xnl:7 (2.7) BS10 CHL ? GO:0009416 ... Q04918 28839073
    384 5xnl:7 (2.7) BS11 CHL ? GO:0009416 ... Q04918 28839073
    385 5xnl:8 (2.7) BS02 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    386 5xnl:8 (2.7) BS06 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    387 5xnl:8 (2.7) BS07 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    388 5xnl:8 (2.7) BS08 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    389 5xnl:8 (2.7) BS09 CHL ? GO:0009416 ... A0A2D0TCJ3 28839073
    390 5xnl:G (2.7) BS01 CHL ? GO:0009765 ... P27490 28839073
    391 5xnl:G (2.7) BS05 CHL ? GO:0009765 ... P27490 28839073
    392 5xnl:G (2.7) BS06 CHL ? GO:0009765 ... P27490 28839073
    393 5xnl:G (2.7) BS07 CHL ? GO:0009765 ... P27490 28839073
    394 5xnl:G (2.7) BS08 CHL ? GO:0009765 ... P27490 28839073
    395 5xnl:G (2.7) BS09 CHL ? GO:0009765 ... P27490 28839073
    396 5xnl:G (2.7) BS15 CHL ? GO:0009765 ... P27490 28839073
    397 5xnl:G (2.7) BS16 CHL ? GO:0009765 ... P27490 28839073
    398 5xnl:G (2.7) BS17 CHL ? GO:0009765 ... P27490 28839073
    399 5xnl:N (2.7) BS02 CHL ? GO:0009765 ... P27490 28839073
    400 5xnl:N (2.7) BS03 CHL ? GO:0009765 ... P27490 28839073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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