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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1jiz:A (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929 PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    2 1jiz:B (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929
    3 2w0d:A (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    4 2w0d:A (2.0) BS07 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    5 2w0d:B (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    6 2w0d:C (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    7 2w0d:D (2.0) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 19239231 MOAD: ic50~2nM
    8 3ayk:A (-1.00) BS04 CGS 3.4.24.7 GO:0004222 ... P03956 10353819 BindingDB: Ki=33nM, IC50=15nM
    9 4ayk:A (-1.00) BS04 CGS 3.4.24.7 GO:0004222 ... P03956 10353819 BindingDB: Ki=33nM, IC50=15nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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