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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 733 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bwv:A (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... O98949 10336462
    2 1bwv:C (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... O98949 10336462
    3 1bwv:E (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... O98949 10336462
    4 1bwv:G (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... O98949 10336462
    5 1gk8:A (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    6 1gk8:C (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    7 1gk8:E (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    8 1gk8:G (1.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11641402
    9 1ir1:A (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    10 1ir1:B (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    11 1ir1:C (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    12 1ir1:D (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    13 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    14 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    15 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    16 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    18 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    19 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    20 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    21 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    22 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    23 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    24 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    25 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    26 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    27 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    28 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    29 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    30 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    31 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    32 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    33 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    34 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    35 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    36 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    37 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    38 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    39 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    40 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    41 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    42 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    43 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    44 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    45 1rbl:A (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    46 1rbl:A (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    47 1rbl:B (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    48 1rbl:B (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    49 1rbl:C (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    50 1rbl:C (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    51 1rbl:D (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    52 1rbl:D (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    53 1rbl:E (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    54 1rbl:E (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    55 1rbl:F (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    56 1rbl:F (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    57 1rbl:G (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    58 1rbl:G (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    59 1rbl:H (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    60 1rbl:H (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00880 15299492
    61 1rbo:B (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 8955130 MOAD: Kd=0.19pM
    62 1rbo:E (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 8955130 MOAD: Kd=0.19pM
    63 1rbo:H (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 8955130 MOAD: Kd=0.19pM
    64 1rbo:L (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 8955130 MOAD: Kd=0.19pM
    PDBbind: -logKd/Ki=12.72, Kd=0.19pM
    65 1rlc:L (2.7) BS01 CAP 4.1.1.39 GO:0000287 ... P00876 8142899
    66 1upm:B (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    67 1upm:B (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    68 1upm:E (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    69 1upm:E (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    70 1upm:H (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    71 1upm:H (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    72 1upm:K (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    73 1upm:K (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    74 1upm:L (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    75 1upm:L (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    76 1upm:O (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    77 1upm:O (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    78 1upm:R (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    79 1upm:R (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    80 1upm:V (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    81 1upm:V (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    82 1upp:A (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    83 1upp:C (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    84 1upp:E (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    85 1upp:G (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 14596800
    86 1uw9:A (2.05) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    87 1uw9:A (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    88 1uw9:B (2.05) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    89 1uw9:B (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    90 1uw9:E (2.05) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    91 1uw9:E (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    92 1uw9:H (2.05) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    93 1uw9:H (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    94 1uw9:K (2.05) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    95 1uw9:K (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    96 1uw9:O (2.05) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    97 1uw9:O (2.05) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    98 1uw9:R (2.05) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    99 1uw9:R (2.05) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    100 1uw9:V (2.05) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    101 1uw9:V (2.05) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    102 1uwa:A (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    103 1uwa:A (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    104 1uwa:B (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    105 1uwa:B (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    106 1uwa:E (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    107 1uwa:E (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    108 1uwa:H (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    109 1uwa:H (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    110 1uwa:K (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    111 1uwa:K (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    112 1uwa:O (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    113 1uwa:O (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    114 1uwa:R (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    115 1uwa:R (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    116 1uwa:V (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    117 1uwa:V (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 15628851
    118 1uzd:A (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    119 1uzd:A (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    120 1uzd:B (2.4) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    121 1uzd:B (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    122 1uzd:E (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    123 1uzd:E (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    124 1uzd:H (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    125 1uzd:H (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    126 1uzd:K (2.4) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    127 1uzd:K (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    128 1uzd:O (2.4) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    129 1uzd:O (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    130 1uzd:R (2.4) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    131 1uzd:R (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    132 1uzd:V (2.4) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    133 1uzd:V (2.4) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    134 1uzh:A (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    135 1uzh:A (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    136 1uzh:B (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    137 1uzh:B (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    138 1uzh:E (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    139 1uzh:E (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    140 1uzh:H (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    141 1uzh:H (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    142 1uzh:K (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    143 1uzh:K (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    144 1uzh:O (2.2) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    145 1uzh:O (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    146 1uzh:R (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    147 1uzh:R (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    148 1uzh:V (2.2) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    149 1uzh:V (2.2) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 16026157
    150 1wdd:A (1.35) BS02 CAP 4.1.1.39 GO:0000166 ... P0C512 22609438
    151 1wdd:A (1.35) BS03 CAP 4.1.1.39 GO:0000166 ... P0C512 22609438
    152 1wdd:E (1.35) BS01 CAP 4.1.1.39 GO:0000166 ... P0C512 22609438
    153 1wdd:E (1.35) BS03 CAP 4.1.1.39 GO:0000166 ... P0C512 22609438
    154 2v63:A (1.8) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    155 2v63:A (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    156 2v63:B (1.8) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    157 2v63:B (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    158 2v63:C (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    159 2v63:C (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    160 2v63:D (1.8) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    161 2v63:D (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    162 2v63:E (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    163 2v63:E (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    164 2v63:F (1.8) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    165 2v63:F (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    166 2v63:G (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    167 2v63:G (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    168 2v63:H (1.8) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    169 2v63:H (1.8) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    170 2v67:A (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    171 2v67:A (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    172 2v67:B (2.0) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    173 2v67:B (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    174 2v67:C (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    175 2v67:C (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    176 2v67:D (2.0) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    177 2v67:D (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    178 2v67:E (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    179 2v67:E (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    180 2v67:F (2.0) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    181 2v67:F (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    182 2v67:G (2.0) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    183 2v67:G (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    184 2v67:H (2.0) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    185 2v67:H (2.0) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    186 2v68:A (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    187 2v68:A (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    188 2v68:B (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    189 2v68:B (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    190 2v68:C (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    191 2v68:C (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    192 2v68:D (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    193 2v68:D (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    194 2v68:E (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    195 2v68:E (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    196 2v68:F (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    197 2v68:F (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    198 2v68:G (2.3) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    199 2v68:G (2.3) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 17824672
    200 2v68:H (2.3) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 17824672

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218