Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 115 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1buc:A (2.5) BS01 CAA 1.3.8.1 GO:0003995 ... Q06319 7857927
    2 1buc:B (2.5) BS01 CAA 1.3.8.1 GO:0003995 ... Q06319 7857927
    3 1dub:A (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    4 1dub:A (2.5) BS02 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    5 1dub:B (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    6 1dub:B (2.5) BS02 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    PDBbind: -logKd/Ki=5.80, Ki=1.6uM
    7 1dub:C (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    8 1dub:C (2.5) BS02 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    9 1dub:D (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557
    10 1dub:E (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    11 1dub:F (2.5) BS01 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    12 1dub:F (2.5) BS02 CAA 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 8895557 MOAD: Ki=1.6uM
    13 1ee0:A (2.05) BS01 CAA 2.3.1.- GO:0009058 ... P48391 11137815
    14 1ee0:B (2.05) BS01 CAA 2.3.1.- GO:0009058 ... P48391 11137815
    15 1f0y:A (1.8) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 10840044
    16 1f0y:B (1.8) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 10840044
    17 1il0:A (2.2) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 11451959
    18 1il0:A (2.2) BS03 CAA 1.1.1.35 GO:0003857 ... Q16836 11451959
    19 1il0:B (2.2) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 11451959
    20 1jqi:A (2.25) BS01 CAA 1.3.8.1 GO:0000062 ... P15651 11812788
    21 1jqi:B (2.25) BS02 CAA 1.3.8.1 GO:0000062 ... P15651 11812788
    22 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    23 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    24 1m75:A (2.3) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    25 1m75:B (2.3) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    26 1m76:A (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    27 1m76:B (2.15) BS01 CAA 1.1.1.35 GO:0003857 ... Q16836 N/A
    28 1q51:A (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    29 1q51:B (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    30 1q51:C (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    31 1q51:D (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    32 1q51:E (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    33 1q51:F (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    34 1q51:G (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    35 1q51:H (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    36 1q51:I (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    37 1q51:J (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    38 1q51:K (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    39 1q51:L (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    40 1txt:A (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    41 1txt:B (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    42 1txt:C (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    43 1txt:D (2.501) BS01 CAA 4.1.3.5 GO:0004421 ... Q9FD87 15292254
    44 1xpk:A (2.0) BS02 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    45 1xpk:B (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    46 1xpk:D (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    47 1xpl:A (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    48 1xpl:B (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    49 1xpl:C (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    50 1xpl:D (2.0) BS01 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    51 1xpm:A (1.6) BS02 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    52 1xpm:B (1.6) BS02 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    53 1xpm:C (1.6) BS02 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    54 1xpm:D (1.6) BS02 CAA 2.3.3.10 GO:0004421 ... A0A0H3K1U2 15498869
    55 2gd2:A (1.7) BS01 CAA 5.1.99.4 GO:0003824 ... O06543 17320106
    56 2gd2:B (1.7) BS01 CAA 5.1.99.4 GO:0003824 ... O06543 17320106
    57 2gd2:C (1.7) BS01 CAA 5.1.99.4 GO:0003824 ... O06543 17320106
    58 2gd2:D (1.7) BS01 CAA 5.1.99.4 GO:0003824 ... O06543 17320106
    59 2ix5:A (2.7) BS01 CAA 1.3.3.6 GO:0003995 ... Q96329 16887802
    60 2ix5:B (2.7) BS02 CAA 1.3.3.6 GO:0003995 ... Q96329 16887802
    61 2ix5:C (2.7) BS01 CAA 1.3.3.6 GO:0003995 ... Q96329 16887802
    62 2ix5:D (2.7) BS02 CAA 1.3.3.6 GO:0003995 ... Q96329 16887802
    63 2uzf:A (2.9) BS01 CAA 4.1.3.36 GO:0005829 ... Q5HH38 18007038
    64 3q0j:C (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    65 3q0j:F (2.4) BS01 CAA 4.2.1.17 GO:0003824 ... P9WNN9 N/A
    66 3vzs:A (2.14) BS02 CAA 1.1.1.36 GO:0005737 ... P14697 23913421
    67 3vzs:B (2.14) BS02 CAA 1.1.1.36 GO:0005737 ... P14697 23913421
    68 3vzs:C (2.14) BS02 CAA 1.1.1.36 GO:0005737 ... P14697 23913421
    69 3vzs:D (2.14) BS02 CAA 1.1.1.36 GO:0005737 ... P14697 23913421
    70 4fn8:A (1.831) BS01 CAA 4.2.1.17 GO:0006635 ... I6Y8B5 N/A
    71 4kuh:A (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    72 4kuh:B (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    73 4kuh:C (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    74 4kuh:D (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    75 4kuh:E (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    76 4kuh:E (2.51) BS02 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    77 4kuh:F (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    78 4kuh:G (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    79 4kuh:H (2.51) BS01 CAA 1.1.1.157 GO:0000166 ... C4IEM5 N/A
    80 4n5m:A (1.34) BS01 CAA 1.1.1.36 GO:0005737 ... P14697 24211201
    81 4n5m:B (1.34) BS01 CAA 1.1.1.36 GO:0005737 ... P14697 24211201
    82 4nbu:B (1.34) BS02 CAA N/A GO:0016491 ... N/A 24212572
    83 4omr:A (1.85) BS01 CAA 4.2.1.17 GO:0003824 ... Q47NQ8 N/A
    84 4pze:A (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    85 4pze:B (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    86 4pze:B (2.7) BS02 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    87 4pze:C (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    88 4pze:C (2.7) BS02 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    89 4pze:D (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    90 4pze:E (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    91 4pze:F (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    92 4pze:G (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    93 4pze:G (2.7) BS02 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    94 4pze:H (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    95 4pze:H (2.7) BS02 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    96 4pze:I (2.7) BS01 CAA 1.1.1.35 GO:0000166 ... Q0KEY8 24792376
    97 4zdb:A (2.14) BS01 CAA 5.3.3.8 GO:0004165 ... Q05871 26527136
    98 4zdb:B (2.14) BS01 CAA 5.3.3.8 GO:0004165 ... Q05871 26527136
    99 4zdb:C (2.14) BS01 CAA 5.3.3.8 GO:0004165 ... Q05871 26527136
    100 5ab6:A (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    101 5ab6:B (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    102 5ab6:C (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    103 5ab6:D (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    104 5ab6:E (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    105 5ab6:F (1.9) BS01 CAA ? GO:0016746 ... C9ZUV7 27093562 MOAD: Kd=0.9mM
    106 5hwq:A (1.5) BS01 CAA 2.3.3.10 GO:0004421 ... Q1D4I1 27124816
    107 5lnq:A (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    108 5lnq:B (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    109 5lnq:D (1.98) BS01 CAA 2.3.1.176 GO:0003988 ... E9AW84 28062645
    110 5mgb:A (2.8) BS01 CAA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 29226071
    111 5mgb:B (2.8) BS01 CAA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 29226071
    112 6zib:AAA (2.7) BS01 CAA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 N/A
    113 6zib:BBB (2.7) BS01 CAA 1.1.1.35
    4.2.1.17
    5.3.3.8    		 GO:0003824 ... P07896 N/A
    114 8w0u:A (2.8) BS02 CAA N/A GO:0000062 ... P28330 38839792
    115 8w0u:B (2.8) BS03 CAA N/A GO:0000062 ... P28330 38839792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218