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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1bch:1 (2.0) BS01 CA ? N/A P19999 9677372
    402 1bch:1 (2.0) BS02 CA ? N/A P19999 9677372
    403 1bch:2 (2.0) BS01 CA ? N/A P19999 9677372
    404 1bch:2 (2.0) BS02 CA ? N/A P19999 9677372
    405 1bch:2 (2.0) BS03 CA ? N/A P19999 9677372
    406 1bch:3 (2.0) BS01 CA ? N/A P19999 9677372
    407 1bch:3 (2.0) BS02 CA ? N/A P19999 9677372
    408 1bci:A (-1.00) BS01 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9665851
    409 1bci:A (-1.00) BS02 CA 3.1.1.4
    3.1.1.5
    GO:0005509 ... P47712 9665851
    410 1bcj:1 (2.1) BS01 CA ? N/A P19999 9677372
    411 1bcj:1 (2.1) BS02 CA ? N/A P19999 9677372
    412 1bcj:1 (2.1) BS03 CA ? N/A P19999 9677372
    413 1bcj:2 (2.1) BS01 CA ? N/A P19999 9677372
    414 1bcj:2 (2.1) BS02 CA ? N/A P19999 9677372
    415 1bcj:2 (2.1) BS03 CA ? N/A P19999 9677372
    416 1bcj:3 (2.1) BS01 CA ? N/A P19999 9677372
    417 1bcj:3 (2.1) BS02 CA ? N/A P19999 9677372
    418 1bcj:3 (2.1) BS03 CA ? N/A P19999 9677372
    419 1bcw:A (2.1) BS01 CA ? GO:0001786 ... P14668 9609693
    420 1bcw:A (2.1) BS02 CA ? GO:0001786 ... P14668 9609693
    421 1bcw:A (2.1) BS03 CA ? GO:0001786 ... P14668 9609693
    422 1bcw:A (2.1) BS04 CA ? GO:0001786 ... P14668 9609693
    423 1bcw:A (2.1) BS05 CA ? GO:0001786 ... P14668 9609693
    424 1bcy:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    425 1bcy:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    426 1bcy:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    427 1bcy:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    428 1bcy:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693
    429 1bcz:A (2.2) BS01 CA ? GO:0001786 ... P14668 9609693
    430 1bcz:A (2.2) BS02 CA ? GO:0001786 ... P14668 9609693
    431 1bcz:A (2.2) BS03 CA ? GO:0001786 ... P14668 9609693
    432 1bcz:A (2.2) BS04 CA ? GO:0001786 ... P14668 9609693
    433 1bcz:A (2.2) BS05 CA ? GO:0001786 ... P14668 9609693
    434 1be6:A (2.15) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    435 1be8:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9789015
    436 1bf2:A (2.0) BS01 CA 3.2.1.68 GO:0004553 ... P10342 9719642
    437 1bfd:A (1.6) BS01 CA 4.1.1.7 GO:0000287 ... P20906 9665697
    438 1bfk:A (2.3) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    439 1bfu:A (2.2) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9675126
    440 1bg9:A (2.8) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    441 1bg9:A (2.8) BS04 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    442 1bg9:A (2.8) BS05 CA 3.2.1.1 GO:0004556 ... P04063 9571044
    443 1bgp:A (1.9) BS01 CA 1.11.1.7 GO:0004601 ... Q40069 9442067
    444 1bh6:A (1.75) BS01 CA 3.4.21.62 GO:0004252 ... P00781 9826175
    445 1bit:A (1.83) BS01 CA 3.4.21.4 GO:0004252 ... P35031 15299802
    446 1biw:A (2.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    447 1biw:A (2.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    448 1biw:A (2.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    449 1biw:B (2.5) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    450 1biw:B (2.5) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    451 1biw:B (2.5) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9873489
    452 1bj3:A (2.6) BS01 CA ? GO:0005509 ... Q7LZ71 10339409
    453 1bj3:B (2.6) BS01 CA ? GO:0005509 ... P23807 10339409
    454 1bjf:A (2.4) BS01 CA ? GO:0003779 ... P61602 9886296
    455 1bjf:A (2.4) BS02 CA ? GO:0003779 ... P61602 9886296
    456 1bjf:A (2.4) BS03 CA ? GO:0003779 ... P61602 9886296
    457 1bjf:B (2.4) BS01 CA ? GO:0003779 ... P61602 9886296
    458 1bjf:B (2.4) BS02 CA ? GO:0003779 ... P61602 9886296
    459 1bjf:B (2.4) BS03 CA ? GO:0003779 ... P61602 9886296
    460 1bji:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9526556
    461 1bjj:A (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    462 1bjj:A (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    463 1bjj:B (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    464 1bjj:B (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    465 1bjj:C (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    466 1bjj:D (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    467 1bjj:D (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    468 1bjj:E (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    469 1bjj:E (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    470 1bjj:F (2.8) BS01 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    471 1bjj:F (2.8) BS02 CA 3.1.1.4 GO:0004623 ... P14421 10666574
    472 1bjq:A (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    473 1bjq:B (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    474 1bjq:C (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    475 1bjq:D (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    476 1bjq:E (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    477 1bjq:F (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    478 1bjq:G (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    479 1bjq:H (2.65) BS01 CA ? GO:0005537 ... P05045 10047489
    480 1bjr:E (2.44) BS02 CA 3.4.21.64 GO:0004252 ... P06873 9741842
    481 1bjr:E (2.44) BS03 CA 3.4.21.64 GO:0004252 ... P06873 9741842
    482 1bju:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9836602
    483 1bjv:A (1.8) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9836602
    484 1bk9:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 9663694
    485 1bli:A (1.9) BS01 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    486 1bli:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    487 1bli:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    488 1blx:A (1.9) BS01 CA 2.7.11.22 GO:0000082 ... Q00534 9751051
    489 1bm6:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    490 1bm6:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    491 1bma:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7604279
    492 1bmo:A (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    493 1bmo:A (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    494 1bmo:B (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    495 1bmo:B (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    496 1bn8:A (1.8) BS01 CA 4.2.2.2 GO:0030570 ... P39116 7634076
    497 1bp2:A (1.7) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7265241
    498 1bpq:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 1751497
    499 1bqb:A (1.72) BS02 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    500 1bqb:A (1.72) BS03 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    501 1bqb:A (1.72) BS04 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    502 1bqo:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    503 1bqo:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    504 1bqo:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    505 1bqo:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    506 1bqo:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    507 1bqo:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    508 1bqp:A (2.1) BS01 CA ? GO:0030246 ... P02867 N/A
    509 1bqp:C (2.1) BS02 CA ? GO:0030246 ... P02867 N/A
    510 1bqq:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    511 1bqq:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    512 1bra:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8478942
    513 1brw:A (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    514 1brw:B (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    515 1bsi:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 10091666
    516 1bss:A (2.15) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    517 1bss:A (2.15) BS04 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    518 1bsu:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    519 1bsu:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    520 1bsw:A (1.95) BS02 CA 3.4.24.- GO:0004222 ... Q9PW35 9784374
    521 1btp:A (2.2) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7548040
    522 1btu:A (1.6) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9860865
    523 1btw:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    524 1bty:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    525 1btz:A (2.0) BS02 CA 3.4.21.4 GO:0004175 ... P00760 7599119
    526 1bu3:A (1.65) BS01 CA ? GO:0005509 ... P56503 10739249
    527 1bu3:A (1.65) BS02 CA ? GO:0005509 ... P56503 10739249
    528 1bud:A (1.9) BS02 CA 3.4.24.- GO:0004222 ... Q9PW35 9784374
    529 1buv:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    530 1buv:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    531 1bvi:D (1.9) BS01 CA 4.6.1.24 GO:0001411 ... P00651 10211818
    532 1bvn:P (2.5) BS01 CA 3.2.1.1 GO:0003824 ... P00690 7897663
    533 1bxh:A (2.75) BS04 CA ? GO:0030246 ... P02866 10336986
    534 1bxh:B (2.75) BS03 CA ? GO:0030246 ... P02866 10336986
    535 1bxh:C (2.75) BS03 CA ? GO:0030246 ... P02866 10336986
    536 1bxh:D (2.75) BS04 CA ? GO:0030246 ... P02866 10336986
    537 1byf:A (2.0) BS01 CA ? GO:0030246 ... P16108 10398588
    538 1byf:B (2.0) BS01 CA ? GO:0030246 ... P16108 10398588
    539 1byh:A (2.8) BS03 CA 3.2.1.73 GO:0004553 ... P23904 8099449
    540 1byn:A (-1.00) BS01 CA ? GO:0016020 ... P21707 9819203
    541 1byn:A (-1.00) BS02 CA ? GO:0016020 ... P21707 9819203
    542 1byn:A (-1.00) BS03 CA ? GO:0016020 ... P21707 9819203
    543 1bzs:A (1.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 10354399
    544 1bzs:A (1.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 10354399
    545 1bzw:A (2.7) BS02 CA ? GO:0030246 ... P02872 N/A
    546 1bzw:B (2.7) BS03 CA ? GO:0030246 ... P02872 N/A
    547 1bzw:C (2.7) BS02 CA ? GO:0030246 ... P02872 N/A
    548 1bzw:D (2.7) BS03 CA ? GO:0030246 ... P02872 N/A
    549 1bzx:E (2.1) BS01 CA 3.4.21.4 GO:0004252 ... P35031 9760170
    550 1c07:A (-1.00) BS01 CA ? GO:0005509 ... P42566 10757979
    551 1c0f:S (2.4) BS01 CA ? GO:0051015 ... P06396 10669610
    552 1c0f:S (2.4) BS02 CA ? GO:0051015 ... P06396 10669610
    553 1c0g:S (2.0) BS01 CA ? GO:0051015 ... P06396 10669610
    554 1c0g:S (2.0) BS02 CA ? GO:0051015 ... P06396 10669610
    555 1c1m:A (2.2) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9443341
    556 1c1n:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    557 1c1o:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    558 1c1p:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    559 1c1q:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    560 1c1r:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    561 1c1s:A (1.63) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10497030
    562 1c1t:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    563 1c1y:B (1.9) BS01 CA 2.7.11.1 GO:0007165 ... P04049 7791872
    564 1c2d:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    565 1c2e:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    566 1c2f:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    567 1c2g:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    568 1c2h:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    569 1c2i:A (1.47) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    570 1c2j:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    571 1c2k:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    572 1c2l:A (1.5) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    573 1c2m:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 9468142
    574 1c3h:D (2.1) BS01 CA ? N/A Q60994 N/A
    575 1c3h:D (2.1) BS02 CA ? N/A Q60994 N/A
    576 1c3h:E (2.1) BS01 CA ? N/A Q60994 N/A
    577 1c3h:E (2.1) BS02 CA ? N/A Q60994 N/A
    578 1c3h:F (2.1) BS01 CA ? N/A Q60994 N/A
    579 1c3h:F (2.1) BS02 CA ? N/A Q60994 N/A
    580 1c3i:A (1.83) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    581 1c3i:A (1.83) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    582 1c3i:A (1.83) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    583 1c3i:B (1.83) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    584 1c3i:B (1.83) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    585 1c3i:B (1.83) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10877850
    586 1c3l:A (2.16) BS01 CA 3.4.21.62 GO:0004252 ... P00780 9443341
    587 1c3l:A (2.16) BS02 CA 3.4.21.62 GO:0004252 ... P00780 9443341
    588 1c3x:B (2.4) BS02 CA 2.4.2.1 GO:0003824 ... P81989 10600382
    589 1c57:A (2.4) BS02 CA ? GO:0005537 ... P55915 10771422
    590 1c5l:H (1.47) BS02 CA 3.4.21.5 GO:0004252 ... P00734 10779411
    591 1c5n:H (1.5) BS02 CA 3.4.21.5 GO:0004252 ... P00734 10779411
    592 1c5p:A (1.43) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    593 1c5q:A (1.43) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    594 1c5r:A (1.47) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    595 1c5s:A (1.36) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    596 1c5t:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    597 1c5u:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    598 1c5v:A (1.48) BS01 CA 3.4.21.4 GO:0004175 ... P00760 10779411
    599 1c74:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 11015210
    600 1c7i:A (2.0) BS01 CA 3.1.1.- GO:0004104 ... P37967 10535917

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218