Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 44457 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 12 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 1anx:C (1.9) BS01 CA ? GO:0001786 ... P08758 8254674
    202 1anx:C (1.9) BS02 CA ? GO:0001786 ... P08758 8254674
    203 1anx:C (1.9) BS03 CA ? GO:0001786 ... P08758 8254674
    204 1anx:C (1.9) BS04 CA ? GO:0001786 ... P08758 8254674
    205 1ap4:A (-1.00) BS01 CA ? GO:0005509 ... P63316 9315850
    206 1aqh:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    207 1aqm:A (1.85) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9541387
    208 1aqn:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    209 1aqn:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 N/A
    210 1ar1:A (2.7) BS03 CA 7.1.1.9 GO:0004129 ... P98002 9380672
    211 1arp:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    212 1arp:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 8289254
    213 1aru:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    214 1aru:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    215 1arv:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    216 1arv:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    217 1arw:A (1.6) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    218 1arw:A (1.6) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    219 1arx:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    220 1arx:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    221 1ary:A (1.9) BS01 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    222 1ary:A (1.9) BS02 CA 1.11.1.7 GO:0000302 ... P28313 7665612
    223 1atj:A (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    224 1atj:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    225 1atj:B (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    226 1atj:B (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    227 1atj:C (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    228 1atj:C (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    229 1atj:D (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    230 1atj:D (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    231 1atj:E (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    232 1atj:E (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    233 1atj:F (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    234 1atj:F (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    235 1atl:A (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    236 1atl:B (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    237 1atn:D (2.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    238 1atn:D (2.8) BS02 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    239 1atn:D (2.8) BS03 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    240 1au9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    241 1au9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    242 1aui:B (2.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    243 1aui:B (2.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    244 1aui:B (2.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    245 1aui:B (2.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    246 1aux:A (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    247 1aux:B (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    248 1ava:A (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    249 1ava:A (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    250 1ava:A (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    251 1ava:B (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    252 1ava:B (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    253 1ava:B (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    254 1avc:A (2.9) BS01 CA ? GO:0001725 ... P79134 9748523
    255 1avc:A (2.9) BS02 CA ? GO:0001725 ... P79134 9748523
    256 1avc:A (2.9) BS03 CA ? GO:0001725 ... P79134 9748523
    257 1avc:A (2.9) BS04 CA ? GO:0001725 ... P79134 9748523
    258 1avc:A (2.9) BS05 CA ? GO:0001725 ... P79134 9748523
    259 1avc:A (2.9) BS06 CA ? GO:0001725 ... P79134 9748523
    260 1avh:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    261 1avh:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    262 1avh:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    263 1avh:B (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    264 1avh:B (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    265 1avr:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    266 1avr:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    267 1avr:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    268 1avr:A (2.3) BS04 CA ? GO:0001786 ... P08758 1311770
    269 1avr:A (2.3) BS05 CA ? GO:0001786 ... P08758 1311770
    270 1avs:A (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    271 1avs:A (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    272 1avs:B (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    273 1avs:B (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    274 1avw:A (1.75) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    275 1avx:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    276 1awb:A (2.5) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    277 1awb:A (2.5) BS02 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    278 1awb:B (2.5) BS01 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    279 1awb:B (2.5) BS02 CA 3.1.3.25
    3.1.3.94
    GO:0000287 ... P29218 N/A
    280 1ax0:A (1.9) BS02 CA ? GO:0030246 ... P16404 9545381
    281 1ax1:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    282 1ax2:A (1.95) BS03 CA ? GO:0030246 ... P16404 9545381
    283 1axk:A (2.1) BS01 CA 3.2.1.73
    3.2.1.8
    GO:0004553 ... P18429
    P23904
    9618460
    284 1axk:B (2.1) BS01 CA 3.2.1.73
    3.2.1.8
    GO:0004553 ... P18429
    P23904
    9618460
    285 1axn:A (1.78) BS01 CA ? GO:0001786 ... P12429 8639653
    286 1axn:A (1.78) BS02 CA ? GO:0001786 ... P12429 8639653
    287 1axn:A (1.78) BS03 CA ? GO:0001786 ... P12429 8639653
    288 1axn:A (1.78) BS04 CA ? GO:0001786 ... P12429 8639653
    289 1axn:A (1.78) BS05 CA ? GO:0001786 ... P12429 8639653
    290 1axy:A (1.95) BS02 CA ? GO:0030246 ... P16404 9545381
    291 1axz:A (1.95) BS04 CA ? GO:0030246 ... P16404 9545381
    292 1ay0:A (2.6) BS01 CA 2.2.1.1 GO:0003824 ... P23254 9398292
    293 1ay0:B (2.6) BS02 CA 2.2.1.1 GO:0003824 ... P23254 9398292
    294 1ayk:A (-1.00) BS03 CA 3.4.24.7 GO:0004222 ... P03956 9484219
    295 1ayo:B (1.9) BS01 CA ? GO:0005576 ... Q7SIH1 9634697
    296 1ayp:A (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    297 1ayp:A (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    298 1ayp:B (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    299 1ayp:B (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    300 1ayp:C (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    301 1ayp:C (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    302 1ayp:D (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    303 1ayp:D (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    304 1ayp:E (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    305 1ayp:E (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    306 1ayp:F (2.57) BS01 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    307 1ayp:F (2.57) BS02 CA 3.1.1.4 GO:0004623 ... P14555 15299314
    308 1az0:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    309 1az0:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9367757
    310 1azd:A (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    311 1azd:B (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    312 1azd:C (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    313 1azd:D (3.0) BS01 CA ? GO:0005537 ... P55915 9094437
    314 1b08:A (2.3) BS01 CA ? N/A P35247 10368295
    315 1b08:A (2.3) BS02 CA ? N/A P35247 10368295
    316 1b08:A (2.3) BS03 CA ? N/A P35247 10368295
    317 1b08:B (2.3) BS01 CA ? N/A P35247 10368295
    318 1b08:B (2.3) BS02 CA ? N/A P35247 10368295
    319 1b08:B (2.3) BS03 CA ? N/A P35247 10368295
    320 1b08:C (2.3) BS01 CA ? N/A P35247 10368295
    321 1b08:C (2.3) BS02 CA ? N/A P35247 10368295
    322 1b08:C (2.3) BS03 CA ? N/A P35247 10368295
    323 1b09:A (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    324 1b09:A (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    325 1b09:B (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    326 1b09:B (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    327 1b09:C (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    328 1b09:C (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    329 1b09:D (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    330 1b09:D (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    331 1b09:E (2.5) BS01 CA ? GO:0001849 ... P02741 10368284
    332 1b09:E (2.5) BS02 CA ? GO:0001849 ... P02741 10368284
    333 1b0e:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 9651152
    334 1b0i:A (2.4) BS01 CA 3.2.1.1 GO:0003824 ... P29957 9862804
    335 1b0p:A (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    336 1b0p:B (2.31) BS02 CA 1.2.7.1 GO:0003824 ... P94692 10048931
    337 1b1g:A (-1.00) BS01 CA ? GO:0005499 ... P02633 9390401
    338 1b1g:A (-1.00) BS02 CA ? GO:0005499 ... P02633 9390401
    339 1b2l:A (1.6) BS01 CA 1.1.1.1 GO:0004022 ... P10807 10366509
    340 1b2y:A (3.2) BS05 CA 3.2.1.1 GO:0003824 ... P04746 10657258
    341 1b3d:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    342 1b3d:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    343 1b3d:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    344 1b3d:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    345 1b3d:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    346 1b3d:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10543949
    347 1b47:A (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    348 1b47:B (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    349 1b47:C (2.2) BS01 CA 2.3.2.27 GO:0001784 ... P22681 10078535
    350 1b4n:A (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    351 1b4n:B (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    352 1b4n:C (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    353 1b4n:D (2.4) BS01 CA 1.2.7.5 GO:0009055 ... Q8U1K3 10024458
    354 1b7t:Z (2.5) BS01 CA ? GO:0005509 ... P07291 10338210
    355 1b80:A (1.73) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    356 1b80:A (1.73) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    357 1b80:B (1.73) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    358 1b80:B (1.73) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    359 1b82:A (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    360 1b82:A (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    361 1b82:B (1.8) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    362 1b82:B (1.8) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    363 1b85:A (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    364 1b85:A (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    365 1b85:B (1.85) BS01 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    366 1b85:B (1.85) BS02 CA 1.11.1.14 GO:0000302 ... P06181 11162097
    367 1b8l:A (1.7) BS01 CA ? GO:0005509 ... P02618 10545326
    368 1b8r:A (1.9) BS01 CA ? GO:0005509 ... P02618 10545326
    369 1b8r:A (1.9) BS02 CA ? GO:0005509 ... P02618 10545326
    370 1b8y:A (2.0) BS03 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    371 1b8y:A (2.0) BS04 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    372 1b8y:A (2.0) BS05 CA 3.4.24.17 GO:0004222 ... P08254 10422833
    373 1b90:A (2.5) BS02 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    374 1b94:A (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    375 1b94:B (1.9) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10446231
    376 1b9a:A (2.0) BS01 CA ? GO:0005509 ... P02618 10545326
    377 1b9a:A (2.0) BS02 CA ? GO:0005509 ... P02618 10545326
    378 1b9o:A (1.15) BS01 CA ? GO:0000139 ... P00709 10080897
    379 1b9s:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    380 1b9t:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    381 1b9v:A (2.35) BS01 CA 3.2.1.18 GO:0004308 ... P03474 10547289
    382 1b9z:A (2.1) BS09 CA 3.2.1.2 GO:0000272 ... P36924 10353816
    383 1bag:A (2.5) BS06 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    384 1bag:A (2.5) BS07 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    385 1bag:A (2.5) BS08 CA 3.2.1.1 GO:0003824 ... P00691 9514750
    386 1bc0:A (2.0) BS01 CA ? GO:0001786 ... P14668 9609693
    387 1bc0:A (2.0) BS02 CA ? GO:0001786 ... P14668 9609693
    388 1bc0:A (2.0) BS03 CA ? GO:0001786 ... P14668 9609693
    389 1bc0:A (2.0) BS04 CA ? GO:0001786 ... P14668 9609693
    390 1bc0:A (2.0) BS05 CA ? GO:0001786 ... P14668 9609693
    391 1bc1:A (2.05) BS01 CA ? GO:0001786 ... P14668 9609693
    392 1bc1:A (2.05) BS02 CA ? GO:0001786 ... P14668 9609693
    393 1bc1:A (2.05) BS03 CA ? GO:0001786 ... P14668 9609693
    394 1bc1:A (2.05) BS04 CA ? GO:0001786 ... P14668 9609693
    395 1bc1:A (2.05) BS05 CA ? GO:0001786 ... P14668 9609693
    396 1bc3:A (1.95) BS01 CA ? GO:0001786 ... P14668 9609693
    397 1bc3:A (1.95) BS02 CA ? GO:0001786 ... P14668 9609693
    398 1bc3:A (1.95) BS03 CA ? GO:0001786 ... P14668 9609693
    399 1bc3:A (1.95) BS04 CA ? GO:0001786 ... P14668 9609693
    400 1bc3:A (1.95) BS05 CA ? GO:0001786 ... P14668 9609693

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218