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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 899 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 4d5d:A (1.902) BS09 C8E ? GO:0098657 ... Q48391 26015567
    402 4d5d:A (1.902) BS10 C8E ? GO:0098657 ... Q48391 26015567
    403 4d5d:B (1.902) BS04 C8E ? GO:0098657 ... Q48391 26015567
    404 4d5d:B (1.902) BS05 C8E ? GO:0098657 ... Q48391 26015567
    405 4d5d:B (1.902) BS06 C8E ? GO:0098657 ... Q48391 26015567
    406 4d5d:B (1.902) BS07 C8E ? GO:0098657 ... Q48391 26015567
    407 4d5d:B (1.902) BS08 C8E ? GO:0098657 ... Q48391 26015567
    408 4d5d:B (1.902) BS09 C8E ? GO:0098657 ... Q48391 26015567
    409 4d5d:B (1.902) BS10 C8E ? GO:0098657 ... Q48391 26015567
    410 4d5d:B (1.902) BS11 C8E ? GO:0098657 ... Q48391 26015567
    411 4d5d:B (1.902) BS12 C8E ? GO:0098657 ... Q48391 26015567
    412 4d5d:B (1.902) BS13 C8E ? GO:0098657 ... Q48391 26015567
    413 4dcb:A (2.033) BS02 C8E 3.4.23.48 GO:0004175 ... P17811 22645135
    414 4fms:A (2.45) BS01 C8E ? GO:0015288 ... Q9I6P8 23467408
    415 4fms:A (2.45) BS03 C8E ? GO:0015288 ... Q9I6P8 23467408
    416 4fms:B (2.45) BS02 C8E ? GO:0015288 ... Q9I6P8 23467408
    417 4fms:B (2.45) BS03 C8E ? GO:0015288 ... Q9I6P8 23467408
    418 4fms:B (2.45) BS04 C8E ? GO:0015288 ... Q9I6P8 23467408
    419 4foz:A (2.4) BS01 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    420 4foz:A (2.4) BS02 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    421 4foz:A (2.4) BS03 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    422 4foz:A (2.4) BS04 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    423 4foz:A (2.4) BS05 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    424 4foz:A (2.4) BS06 C8E 3.4.21.- GO:0006508 ... P32722 23467408
    425 4fqe:A (1.93) BS01 C8E ? GO:0005244 ... Q934G3 24914987
    426 4fqe:A (1.93) BS02 C8E ? GO:0005244 ... Q934G3 24914987
    427 4fqe:A (1.93) BS03 C8E ? GO:0005244 ... Q934G3 24914987
    428 4fqe:A (1.93) BS04 C8E ? GO:0005244 ... Q934G3 24914987
    429 4fqe:A (1.93) BS05 C8E ? GO:0005244 ... Q934G3 24914987
    430 4frx:A (1.9) BS01 C8E ? GO:0015288 ... G3XDA5 N/A
    431 4frx:A (1.9) BS02 C8E ? GO:0015288 ... G3XDA5 N/A
    432 4frx:A (1.9) BS03 C8E ? GO:0015288 ... G3XDA5 N/A
    433 4frx:B (1.9) BS01 C8E ? GO:0015288 ... G3XDA5 N/A
    434 4frx:B (1.9) BS02 C8E ? GO:0015288 ... G3XDA5 N/A
    435 4frx:B (1.9) BS03 C8E ? GO:0015288 ... G3XDA5 N/A
    436 4fso:A (2.75) BS01 C8E ? GO:0015288 ... Q9HWK2 N/A
    437 4fso:A (2.75) BS02 C8E ? GO:0015288 ... Q9HWK2 N/A
    438 4fso:A (2.75) BS03 C8E ? GO:0015288 ... Q9HWK2 N/A
    439 4fso:B (2.75) BS01 C8E ? GO:0015288 ... Q9HWK2 N/A
    440 4fsp:A (2.323) BS01 C8E ? GO:0015288 ... Q9HY38 N/A
    441 4fsp:A (2.323) BS02 C8E ? GO:0015288 ... Q9HY38 N/A
    442 4fsp:A (2.323) BS03 C8E ? GO:0015288 ... Q9HY38 N/A
    443 4ft6:A (2.603) BS01 C8E ? GO:0015288 ... Q9I1Q4 N/A
    444 4ft6:A (2.603) BS02 C8E ? GO:0015288 ... Q9I1Q4 N/A
    445 4ft6:A (2.603) BS03 C8E ? GO:0015288 ... Q9I1Q4 N/A
    446 4ft6:A (2.603) BS04 C8E ? GO:0015288 ... Q9I1Q4 N/A
    447 4fuv:A (2.151) BS01 C8E N/A N/A N/A N/A
    448 4fuv:A (2.151) BS02 C8E N/A N/A N/A N/A
    449 4fuv:A (2.151) BS03 C8E N/A N/A N/A N/A
    450 4fuv:A (2.151) BS04 C8E N/A N/A N/A N/A
    451 4fuv:A (2.151) BS05 C8E N/A N/A N/A N/A
    452 4gey:A (2.7) BS02 C8E ? GO:0008643 ... A5VZA8 23066028
    453 4gey:A (2.7) BS03 C8E ? GO:0008643 ... A5VZA8 23066028
    454 4gf4:A (3.1) BS01 C8E ? GO:0008643 ... A5VZA8 23066028
    455 4gf4:A (3.1) BS02 C8E ? GO:0008643 ... A5VZA8 23066028
    456 4gf4:A (3.1) BS03 C8E ? GO:0008643 ... A5VZA8 23066028
    457 4lsi:B (2.089) BS01 C8E ? GO:0001530 ... P02931 24106986
    458 4lsi:B (2.089) BS02 C8E ? GO:0001530 ... P02931 24106986
    459 4lsi:C (2.089) BS01 C8E ? GO:0001530 ... P02931 24106986
    460 4mt4:A (2.373) BS01 C8E ? GO:0015562 ... Q8RTE3 24753291
    461 4mt4:A (2.373) BS02 C8E ? GO:0015562 ... Q8RTE3 24753291
    462 4mt4:A (2.373) BS03 C8E ? GO:0015562 ... Q8RTE3 24753291
    463 4mt4:B (2.373) BS01 C8E ? GO:0015562 ... Q8RTE3 24753291
    464 4mt4:B (2.373) BS02 C8E ? GO:0015562 ... Q8RTE3 24753291
    465 4mt4:B (2.373) BS03 C8E ? GO:0015562 ... Q8RTE3 24753291
    466 4mt4:B (2.373) BS04 C8E ? GO:0015562 ... Q8RTE3 24753291
    467 4mt4:C (2.373) BS01 C8E ? GO:0015562 ... Q8RTE3 24753291
    468 4mt4:C (2.373) BS02 C8E ? GO:0015562 ... Q8RTE3 24753291
    469 4mt4:C (2.373) BS03 C8E ? GO:0015562 ... Q8RTE3 24753291
    470 4mt4:C (2.373) BS04 C8E ? GO:0015562 ... Q8RTE3 24753291
    471 4nre:A (2.63) BS02 C8E 1.13.11.-
    1.13.11.33    		 GO:0001676 ... O15296 24497644
    472 4nre:A (2.63) BS03 C8E 1.13.11.-
    1.13.11.33    		 GO:0001676 ... O15296 24497644
    473 4q35:A (2.393) BS01 C8E ? GO:0009279 ... Q83SQ0 24990751
    474 4q35:A (2.393) BS02 C8E ? GO:0009279 ... Q83SQ0 24990751
    475 4q35:A (2.393) BS03 C8E ? GO:0009279 ... Q83SQ0 24990751
    476 4q35:A (2.393) BS04 C8E ? GO:0009279 ... Q83SQ0 24990751
    477 4rdr:A (2.472) BS02 C8E ? GO:0009279 ... Q9JZN9 26282243
    478 4rdr:A (2.472) BS03 C8E ? GO:0009279 ... Q9JZN9 26282243
    479 4rdr:A (2.472) BS04 C8E ? GO:0009279 ... Q9JZN9 26282243
    480 4rdt:A (3.2) BS02 C8E ? GO:0009279 ... Q9JZN9 26282243
    481 4rdt:A (3.2) BS03 C8E ? GO:0009279 ... Q9JZN9 26282243
    482 4rjw:A (1.52) BS01 C8E ? GO:0006811 ... P32977 26445443
    483 4rjw:A (1.52) BS02 C8E ? GO:0006811 ... P32977 26445443
    484 4rjx:A (1.54) BS01 C8E ? GO:0006811 ... P32977 26445443
    485 4rl8:A (2.3) BS01 C8E ? N/A A5W3Z9 26149193
    486 4rl8:A (2.3) BS02 C8E ? N/A A5W3Z9 26149193
    487 4rl8:A (2.3) BS03 C8E ? N/A A5W3Z9 26149193
    488 4rl8:B (2.3) BS01 C8E ? N/A A5W3Z9 26149193
    489 4rl8:B (2.3) BS02 C8E ? N/A A5W3Z9 26149193
    490 4rl8:C (2.3) BS01 C8E ? N/A A5W3Z9 26149193
    491 4rl8:C (2.3) BS02 C8E ? N/A A5W3Z9 26149193
    492 4rl8:C (2.3) BS03 C8E ? N/A A5W3Z9 26149193
    493 4rl8:C (2.3) BS04 C8E ? N/A A5W3Z9 26149193
    494 4rl8:D (2.3) BS01 C8E ? N/A A5W3Z9 26149193
    495 4rl8:D (2.3) BS02 C8E ? N/A A5W3Z9 26149193
    496 4rl8:D (2.3) BS03 C8E ? N/A A5W3Z9 26149193
    497 4rl8:D (2.3) BS04 C8E ? N/A A5W3Z9 26149193
    498 4rlc:A (1.6) BS01 C8E ? N/A P13794 25846137
    499 4rlc:A (1.6) BS02 C8E ? N/A P13794 25846137
    500 4rlc:A (1.6) BS03 C8E ? N/A P13794 25846137
    501 4rlc:A (1.6) BS04 C8E ? N/A P13794 25846137
    502 4v3g:A (2.513) BS01 C8E ? GO:0098657 ... Q48391 26015567
    503 4v3g:A (2.513) BS02 C8E ? GO:0098657 ... Q48391 26015567
    504 4v3g:A (2.513) BS03 C8E ? GO:0098657 ... Q48391 26015567
    505 4v3g:A (2.513) BS04 C8E ? GO:0098657 ... Q48391 26015567
    506 4v3g:A (2.513) BS05 C8E ? GO:0098657 ... Q48391 26015567
    507 4v3g:B (2.513) BS01 C8E ? GO:0098657 ... Q48391 26015567
    508 4v3g:B (2.513) BS02 C8E ? GO:0098657 ... Q48391 26015567
    509 4v3g:B (2.513) BS03 C8E ? GO:0098657 ... Q48391 26015567
    510 4v3h:A (1.83) BS01 C8E ? GO:0098657 ... Q48391 26015567
    511 4v3h:A (1.83) BS02 C8E ? GO:0098657 ... Q48391 26015567
    512 4v3h:A (1.83) BS03 C8E ? GO:0098657 ... Q48391 26015567
    513 4v3h:A (1.83) BS04 C8E ? GO:0098657 ... Q48391 26015567
    514 4v3h:B (1.83) BS01 C8E ? GO:0098657 ... Q48391 26015567
    515 4v3h:B (1.83) BS02 C8E ? GO:0098657 ... Q48391 26015567
    516 4v3h:B (1.83) BS03 C8E ? GO:0098657 ... Q48391 26015567
    517 4v3h:B (1.83) BS04 C8E ? GO:0098657 ... Q48391 26015567
    518 4v3h:B (1.83) BS05 C8E ? GO:0098657 ... Q48391 26015567
    519 5dl5:A (2.05) BS01 C8E N/A GO:0016020 ... N/A 26805524
    520 5dl5:A (2.05) BS02 C8E N/A GO:0016020 ... N/A 26805524
    521 5dl7:A (1.75) BS05 C8E ? GO:0015288 ... A0A0D5YKR4 26805524
    522 5dl7:A (1.75) BS06 C8E ? GO:0015288 ... A0A0D5YKR4 26805524
    523 5dl7:A (1.75) BS07 C8E ? GO:0015288 ... A0A0D5YKR4 26805524
    524 5dl7:A (1.75) BS08 C8E ? GO:0015288 ... A0A0D5YKR4 26805524
    525 5dl8:B (2.2) BS01 C8E ? GO:0015288 ... A0A0D5YI36 26805524
    526 5egf:A (2.29) BS01 C8E ? GO:0003824 ... F1CWE4 27748753
    527 5egf:B (2.29) BS01 C8E ? GO:0003824 ... F1CWE4 27748753
    528 5egf:D (2.29) BS01 C8E ? GO:0003824 ... F1CWE4 27748753
    529 5egf:D (2.29) BS02 C8E ? GO:0003824 ... F1CWE4 27748753
    530 5fok:A (1.9) BS01 C8E ? GO:0006826 ... G3XCY8 28137795
    531 5fok:A (1.9) BS02 C8E ? GO:0006826 ... G3XCY8 28137795
    532 5fok:B (1.9) BS01 C8E ? GO:0006826 ... G3XCY8 28137795
    533 5fok:B (1.9) BS02 C8E ? GO:0006826 ... G3XCY8 28137795
    534 5fp1:A (1.94) BS01 C8E ? GO:0006826 ... D0CAH3 28137795
    535 5fp1:A (1.94) BS02 C8E ? GO:0006826 ... D0CAH3 28137795
    536 5fp1:A (1.94) BS03 C8E ? GO:0006826 ... D0CAH3 28137795
    537 5fp1:A (1.94) BS04 C8E ? GO:0006826 ... D0CAH3 28137795
    538 5fq8:B (2.75) BS05 C8E ? GO:0009279 ... Q8A5H5 28077872
    539 5fq8:D (2.75) BS05 C8E ? GO:0009279 ... Q8A5H5 28077872
    540 5fq8:D (2.75) BS06 C8E ? GO:0009279 ... Q8A5H5 28077872
    541 5fr8:A (2.83) BS01 C8E ? GO:0006826 ... D0C8V9 28137795
    542 5fr8:B (2.83) BS01 C8E ? GO:0006826 ... D0C8V9 28137795
    543 5fvn:A (1.45) BS02 C8E ? GO:0006811 ... Q93K99 27493217
    544 5fvn:A (1.45) BS03 C8E ? GO:0006811 ... Q93K99 27493217
    545 5fvn:A (1.45) BS04 C8E ? GO:0006811 ... Q93K99 27493217
    546 5fvn:A (1.45) BS05 C8E ? GO:0006811 ... Q93K99 27493217
    547 5fvn:B (1.45) BS02 C8E ? GO:0006811 ... Q93K99 27493217
    548 5fvn:B (1.45) BS03 C8E ? GO:0006811 ... Q93K99 27493217
    549 5fvn:C (1.45) BS02 C8E ? GO:0006811 ... Q93K99 27493217
    550 5fvn:D (1.45) BS03 C8E ? GO:0006811 ... Q93K99 27493217
    551 5fvn:D (1.45) BS04 C8E ? GO:0006811 ... Q93K99 27493217
    552 5iv8:A (2.938) BS01 C8E ? GO:0009279 ... C4T9I0 27161977
    553 5iv8:C (2.938) BS01 C8E ? GO:0009279 ... C4T9I0 27161977
    554 5iv8:C (2.938) BS02 C8E ? GO:0009279 ... C4T9I0 27161977
    555 5iv8:C (2.938) BS03 C8E ? GO:0009279 ... C4T9I0 27161977
    556 5iv8:C (2.938) BS04 C8E ? GO:0009279 ... C4T9I0 27161977
    557 5iva:A (2.988) BS01 C8E ? GO:0009279 ... Q9I5U2 27161977
    558 5iva:A (2.988) BS02 C8E ? GO:0009279 ... Q9I5U2 27161977
    559 5iva:A (2.988) BS03 C8E ? GO:0009279 ... Q9I5U2 27161977
    560 5iva:A (2.988) BS04 C8E ? GO:0009279 ... Q9I5U2 27161977
    561 5iva:A (2.988) BS05 C8E ? GO:0009279 ... Q9I5U2 27161977
    562 5iva:A (2.988) BS06 C8E ? GO:0009279 ... Q9I5U2 27161977
    563 5ixm:A (2.746) BS01 C8E ? GO:0019867 ... Q8ZIK3 27161977
    564 5ixm:A (2.746) BS02 C8E ? GO:0019867 ... Q8ZIK3 27161977
    565 5ixm:A (2.746) BS03 C8E ? GO:0019867 ... Q8ZIK3 27161977
    566 5ixm:A (2.746) BS04 C8E ? GO:0019867 ... Q8ZIK3 27161977
    567 5ixm:A (2.746) BS05 C8E ? GO:0019867 ... Q8ZIK3 27161977
    568 5ixm:A (2.746) BS06 C8E ? GO:0019867 ... Q8ZIK3 27161977
    569 5ixm:C (2.746) BS01 C8E ? GO:0019867 ... Q8ZIK3 27161977
    570 5ixm:C (2.746) BS02 C8E ? GO:0019867 ... Q8ZIK3 27161977
    571 5ixm:C (2.746) BS03 C8E ? GO:0019867 ... Q8ZIK3 27161977
    572 5ixm:C (2.746) BS04 C8E ? GO:0019867 ... Q8ZIK3 27161977
    573 5ixm:C (2.746) BS05 C8E ? GO:0019867 ... Q8ZIK3 27161977
    574 5ixm:C (2.746) BS06 C8E ? GO:0019867 ... Q8ZIK3 27161977
    575 5ixm:E (2.746) BS01 C8E ? GO:0019867 ... Q8ZIK3 27161977
    576 5ixm:E (2.746) BS02 C8E ? GO:0019867 ... Q8ZIK3 27161977
    577 5ixm:E (2.746) BS03 C8E ? GO:0019867 ... Q8ZIK3 27161977
    578 5ixm:G (2.746) BS01 C8E ? GO:0019867 ... Q8ZIK3 27161977
    579 5ixm:G (2.746) BS02 C8E ? GO:0019867 ... Q8ZIK3 27161977
    580 5ixm:G (2.746) BS03 C8E ? GO:0019867 ... Q8ZIK3 27161977
    581 5ixm:G (2.746) BS04 C8E ? GO:0019867 ... Q8ZIK3 27161977
    582 5ldt:A (2.88) BS03 C8E ? GO:0046872 ... Q659I5 27693650
    583 5ldt:A (2.88) BS05 C8E ? GO:0046872 ... Q659I5 27693650
    584 5ldt:B (2.88) BS02 C8E ? GO:0046872 ... Q659I5 27693650
    585 5ldt:B (2.88) BS05 C8E ? GO:0046872 ... Q659I5 27693650
    586 5ldt:C (2.88) BS03 C8E ? GO:0046872 ... Q659I5 27693650
    587 5ldt:C (2.88) BS05 C8E ? GO:0046872 ... Q659I5 27693650
    588 5mdo:A (1.95) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    589 5mdo:A (1.95) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    590 5mdo:A (1.95) BS03 C8E ? GO:0006811 ... L0RVU0 29335469
    591 5mdo:B (1.95) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    592 5mdo:B (1.95) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    593 5mdo:C (1.95) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    594 5mdo:D (1.95) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    595 5mdo:D (1.95) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    596 5mdo:E (1.95) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    597 5mdo:E (1.95) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    598 5mdr:A (1.9) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    599 5mdr:A (1.9) BS02 C8E ? GO:0006811 ... L0RVU0 29335469
    600 5mdr:B (1.9) BS01 C8E ? GO:0006811 ... L0RVU0 29335469
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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