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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1lol:A (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    2 1lol:B (1.9) BS01 BU2 4.1.1.23 GO:0004590 ... O26232 12011084
    3 2rfm:A (1.65) BS01 BU2 ? GO:0000976 ... Q978J0 18305166
    4 2rfm:A (1.65) BS02 BU2 ? GO:0000976 ... Q978J0 18305166
    5 2rfm:B (1.65) BS01 BU2 ? GO:0000976 ... Q978J0 18305166
    6 2rfm:B (1.65) BS02 BU2 ? GO:0000976 ... Q978J0 18305166
    7 3i4z:A (1.76) BS01 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    8 3i4z:A (1.76) BS02 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    9 3i4z:A (1.76) BS03 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    10 3i4z:A (1.76) BS04 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    11 3i4z:A (1.76) BS05 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    12 3i4z:B (1.76) BS01 BU2 2.5.1.34 GO:0004659 ... Q50EL0 19706516
    13 3kaz:B (1.85) BS01 BU2 ? GO:0004864 ... O80992 N/A
    14 3t2z:A (2.2994) BS02 BU2 1.8.5.4 GO:0000166 ... B7JBP8 20303979
    15 3t2z:B (2.2994) BS01 BU2 1.8.5.4 GO:0000166 ... B7JBP8 20303979
    16 4mly:A (2.207) BS01 BU2 5.3.4.1 GO:0042597 ... D0FZX2 24311786
    17 4mly:B (2.207) BS01 BU2 5.3.4.1 GO:0042597 ... D0FZX2 24311786
    18 4mly:B (2.207) BS02 BU2 5.3.4.1 GO:0042597 ... D0FZX2 24311786
    19 4mly:C (2.207) BS01 BU2 5.3.4.1 GO:0042597 ... D0FZX2 24311786
    20 4mly:D (2.207) BS01 BU2 5.3.4.1 GO:0042597 ... D0FZX2 24311786
    21 4ttr:A (2.1) BS01 BU2 2.7.1.24 GO:0004140 ... Q5ZVH3 25449315
    22 4w50:A (2.42) BS02 BU2 2.7.10.1 N/A P54764 25268696
    23 4w50:B (2.42) BS02 BU2 2.7.10.1 N/A P54764 25268696
    24 4w50:C (2.42) BS02 BU2 2.7.10.1 N/A P54764 25268696
    25 4w50:D (2.42) BS02 BU2 2.7.10.1 N/A P54764 25268696
    26 5eky:A (1.1) BS01 BU2 4.1.2.4 GO:0003824 ... P0A6L0 30155096
    27 5mex:A (1.92) BS03 BU2 2.8.2.38 GO:0005737 ... Q9C9C9 28646214
    28 6eqs:A (1.32) BS03 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    29 6eqs:B (1.32) BS03 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    30 6eqs:B (1.32) BS04 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    31 6eqs:C (1.32) BS01 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    32 6eqs:D (1.32) BS03 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    33 6eqs:D (1.32) BS04 BU2 2.3.1.- GO:0036054 ... Q9NXA8 29044784
    34 7c6i:B (1.7) BS02 BU2 ? GO:0015768 ... Q53W80 32866452
    35 7d30:A (2.1) BS01 BU2 N/A N/A N/A 33657135
    36 7twa:C (1.7) BS01 BU2 1.14.99.- GO:0008652 ... F8JJ25 35380785
    37 7twa:D (1.7) BS01 BU2 1.14.99.- GO:0008652 ... F8JJ25 35380785
    38 8igi:A (1.84) BS02 BU2 ? GO:0003677 ... O26054 37116395
    39 8igi:B (1.84) BS01 BU2 ? GO:0003677 ... O26054 37116395
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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