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BioLiP
Download all results in tab-seperated text for 47 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1t0s:A (2.2) BS04 BML ? GO:0004497 ... O87798 15096510
    2 1t0s:A (2.2) BS05 BML ? GO:0004497 ... O87798 15096510
    3 1t0s:A (2.2) BS06 BML ? GO:0004497 ... O87798 15096510
    4 1t0s:A (2.2) BS07 BML ? GO:0004497 ... O87798 15096510
    5 1t0s:A (2.2) BS08 BML ? GO:0004497 ... O87798 15096510
    6 1t0s:B (2.2) BS01 BML ? GO:0004497 ... O87802 15096510
    7 1t0s:B (2.2) BS02 BML ? GO:0004497 ... O87802 15096510
    8 1xu3:A (2.3) BS03 BML 1.14.13.25 GO:0004497 ... P22869 15839679
    9 1xu3:B (2.3) BS03 BML 1.14.13.25 GO:0004497 ... P22869 15839679
    10 3dhh:A (1.94) BS03 BML 1.14.13.236 GO:0004497 ... Q00456 19033467
    11 3dhh:A (1.94) BS04 BML 1.14.13.236 GO:0004497 ... Q00456 19033467
    12 3dhh:A (1.94) BS05 BML 1.14.13.236 GO:0004497 ... Q00456 19033467
    13 3dhh:A (1.94) BS06 BML 1.14.13.236 GO:0004497 ... Q00456 19033467
    14 3dhh:B (1.94) BS01 BML 1.14.13.236 GO:0004497 ... Q00460 19033467
    15 3dhh:E (1.94) BS01 BML 1.14.13.- GO:0004497 ... Q00459 19033467
    16 3lb2:A (1.06) BS02 BML ? GO:0004601 ... Q9NAV8 20816071 MOAD: Kd=1.15mM
    17 3lb2:B (1.06) BS02 BML ? GO:0004601 ... Q9NAV8 20816071 MOAD: Kd=1.15mM
    18 3o7n:A (1.72) BS02 BML ? GO:0004601 ... Q9NAV8 N/A
    19 3o7n:B (1.72) BS02 BML ? GO:0004601 ... Q9NAV8 N/A
    20 3ok5:A (1.72) BS02 BML ? GO:0004601 ... Q9NAV8 N/A
    21 3ok5:B (1.72) BS02 BML ? GO:0004601 ... Q9NAV8 N/A
    22 3rmk:A (1.95) BS03 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    23 3rmk:A (1.95) BS04 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    24 3rmk:A (1.95) BS05 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    25 3rmk:A (1.95) BS06 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    26 3rmk:A (1.95) BS09 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    27 3rmk:B (1.95) BS01 BML 1.14.13.236 GO:0004497 ... Q00460 22264099
    28 3rmk:D (1.95) BS03 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    29 3rmk:D (1.95) BS04 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    30 3rmk:D (1.95) BS05 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    31 3rmk:D (1.95) BS06 BML 1.14.13.236 GO:0004497 ... Q00456 22264099
    32 4hsx:A (1.12) BS02 BML 1.11.1.7 GO:0004601 ... Q9NAV8 23480794
    33 4hsx:B (1.12) BS02 BML 1.11.1.7 GO:0004601 ... Q9NAV8 23480794
    34 5m8u:A (1.9) BS04 BML 1.21.99.5 GO:0005737 ... O68252 28671181
    35 5m8u:A (1.9) BS05 BML 1.21.99.5 GO:0005737 ... O68252 28671181
    36 5m8u:B (1.9) BS01 BML 1.21.99.5 GO:0005737 ... O68252 28671181
    37 5m8u:B (1.9) BS05 BML 1.21.99.5 GO:0005737 ... O68252 28671181
    38 5m8u:B (1.9) BS06 BML 1.21.99.5 GO:0005737 ... O68252 28671181
    39 6vd3:A (1.67) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    40 6vd3:B (1.67) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    41 6vdr:A (1.87) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    42 6vdr:B (1.87) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    43 6vdv:A (1.88) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    44 6vdv:B (1.88) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    45 7m0f:A (1.48) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    46 7m0f:B (1.48) BS02 BML ? GO:0004601 ... Q9NAV7 N/A
    47 8dxm:A (1.99) BS01 BML 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 37115705
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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