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BioLiP Library
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5c4q:A (1.932) BS01 BMF ? N/A A0A3Q8IW45 N/A
    2 5c4q:B (1.932) BS01 BMF ? N/A A0A3Q8IW45 N/A
    3 5c7n:A (1.75) BS01 BMF ? N/A P55201 27167503 MOAD: Kd=0.27uM
    PDBbind: -logKd/Ki=6.57, Kd=0.27uM
    BindingDB: IC50=141nM
    4 5czg:A (1.451) BS01 BMF ? N/A D0A3H5 N/A
    5 5fea:A (2.6) BS01 BMF ? N/A A0A3S7XB61 N/A
    6 5fea:B (2.6) BS01 BMF ? N/A A0A3S7XB61 N/A
    7 5fea:B (2.6) BS02 BMF ? N/A A0A3S7XB61 N/A
    8 5igk:A (1.7) BS01 BMF ? N/A O60885 27757418 MOAD: Kd=41.8nM
    PDBbind: -logKd/Ki=7.38, Kd=41.8nM
    BindingDB: Kd=42nM, IC50=116nM
    9 5igl:A (2.1) BS01 BMF ? GO:0004402 ... Q8IZX4 27757418 MOAD: Kd=42.7nM
    PDBbind: -logKd/Ki=7.37, Kd=42.7nM
    BindingDB: Kd=25000nM
    10 5igm:A (1.6) BS01 BMF ? N/A Q9H8M2 27757418 MOAD: Kd=41.7nM
    PDBbind: -logKd/Ki=7.38, Kd=41.7nM
    BindingDB: IC50=47nM, Kd=114nM
    11 5igm:B (1.6) BS01 BMF ? N/A Q9H8M2 27757418 MOAD: Kd=41.7nM
    BindingDB: IC50=47nM, Kd=114nM
    12 5tck:A (1.95) BS01 BMF ? N/A A0A3Q8I8I6 N/A
    13 5tck:B (1.95) BS01 BMF ? N/A A0A3Q8I8I6 N/A
    14 5u9n:A (2.4) BS01 BMF ? N/A Q5CQB7 N/A
    15 5u9n:A (2.4) BS02 BMF ? N/A Q5CQB7 N/A
    16 5u9n:B (2.4) BS01 BMF ? N/A Q5CQB7 N/A
    17 6nim:B (1.78) BS01 BMF ? N/A A0A2V2V5V1 N/A
    18 6v0u:A (1.4) BS01 BMF ? N/A O60885 32091206 MOAD: Kd=392nM
    BindingDB: Kd=42nM, IC50=116nM
    19 6v1h:A (1.93) BS01 BMF ? N/A Q9NPI1 32091206 MOAD: Kd=114nM
    BindingDB: Kd=392nM
    20 7k1p:A (2.45) BS01 BMF 2.3.1.48
    2.7.11.1
    GO:0004402 ... P21675 35191694 BindingDB: Kd=17nM
    21 7l6d:A (1.55) BS01 BMF ? N/A P25440 34710325 BindingDB: Kd=50nM
    22 7lah:A (1.6) BS01 BMF ? N/A U3KQA6 34710325
    23 7lb4:A (2.004) BS01 BMF ? N/A Q15059 34710325
    24 7lb4:B (2.004) BS01 BMF ? N/A Q15059 34710325
    25 7lel:A (2.15) BS01 BMF ? N/A Q58F21 34710325 BindingDB: Kd=172nM
    26 7lel:B (2.15) BS01 BMF ? N/A Q58F21 34710325 BindingDB: Kd=172nM
    27 7lel:C (2.15) BS01 BMF ? N/A Q58F21 34710325 BindingDB: Kd=172nM
    28 7lel:D (2.15) BS01 BMF ? N/A Q58F21 34710325 BindingDB: Kd=172nM

    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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