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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 3wki:A (2.191) BS02 BGC 5.1.3.11 GO:0005975 ... F8WRK9 24362032
    1202 3wlh:A (1.65) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1203 3wlh:A (1.65) BS03 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1204 3wlj:A (1.67) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1205 3wlk:X (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1206 3wlo:A (1.55) BS01 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1207 3wlo:A (1.55) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 31110237
    1208 3wnl:A (2.6) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 24616103
    1209 3wnm:A (2.25) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 24616103
    1210 3wnn:A (2.25) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 24616103
    1211 3wnn:B (2.25) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 24616103
    1212 3wnp:A (2.8) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 25649478
    1213 3wnp:B (2.8) BS01 BGC 2.4.1.248 GO:0030246 ... P94286 25649478
    1214 3wq0:A (1.22) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1215 3wq0:A (1.22) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1216 3wq1:A (1.3) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1217 3wq1:A (1.3) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1218 3wq1:A (1.3) BS03 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1219 3wv6:A (1.95) BS01 BGC ? GO:0030246 ... O00182 28687490
    1220 3wv6:B (1.95) BS01 BGC ? GO:0030246 ... O00182 28687490
    1221 3wwg:B (2.2) BS01 BGC 3.2.1.57 GO:0004553 ... O00105 25359784
    1222 3wxp:A (1.42) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1223 3wxp:A (1.42) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1224 3wxp:A (1.42) BS03 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1225 3wy2:A (1.471) BS05 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    1226 3wy3:A (3.0) BS04 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    1227 3wy3:B (3.0) BS03 BGC 3.2.1.20 GO:0004556 ... H3K096 26057678
    1228 3wy6:A (1.45) BS01 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1229 3wy6:A (1.45) BS02 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1230 3wy6:A (1.45) BS05 BGC 3.2.1.4 GO:0000272 ... Q9V2T0 N/A
    1231 3x2h:A (0.99) BS01 BGC ? N/A B3Y002 26601228
    1232 3x2h:A (0.99) BS02 BGC ? N/A B3Y002 26601228
    1233 3x2h:A (0.99) BS03 BGC ? N/A B3Y002 26601228
    1234 3x2h:A (0.99) BS04 BGC ? N/A B3Y002 26601228
    1235 3x2h:A (0.99) BS05 BGC ? N/A B3Y002 26601228
    1236 3x2h:A (0.99) BS06 BGC ? N/A B3Y002 26601228
    1237 3x2h:A (0.99) BS07 BGC ? N/A B3Y002 26601228
    1238 3x2h:A (0.99) BS08 BGC ? N/A B3Y002 26601228
    1239 3x2h:A (0.99) BS09 BGC ? N/A B3Y002 26601228
    1240 3x2h:A (0.99) BS10 BGC ? N/A B3Y002 26601228
    1241 3x2h:A (0.99) BS11 BGC ? N/A B3Y002 26601228
    1242 3x2h:A (0.99) BS12 BGC ? N/A B3Y002 26601228
    1243 3x2k:A (1.182) BS02 BGC ? N/A B3Y002 26601228
    1244 3x2k:A (1.182) BS03 BGC ? N/A B3Y002 26601228
    1245 3x2k:A (1.182) BS04 BGC ? N/A B3Y002 26601228
    1246 3x2k:A (1.182) BS05 BGC ? N/A B3Y002 26601228
    1247 3x2k:A (1.182) BS06 BGC ? N/A B3Y002 26601228
    1248 3x2k:A (1.182) BS07 BGC ? N/A B3Y002 26601228
    1249 3x2k:A (1.182) BS08 BGC ? N/A B3Y002 26601228
    1250 3x2m:A (0.64) BS01 BGC ? N/A B3Y002 26601228
    1251 3x2m:A (0.64) BS02 BGC ? N/A B3Y002 26601228
    1252 3x2m:A (0.64) BS03 BGC ? N/A B3Y002 26601228
    1253 3x2m:A (0.64) BS04 BGC ? N/A B3Y002 26601228
    1254 3x2m:A (0.64) BS05 BGC ? N/A B3Y002 26601228
    1255 3x2m:A (0.64) BS06 BGC ? N/A B3Y002 26601228
    1256 3x2m:A (0.64) BS07 BGC ? N/A B3Y002 26601228
    1257 3x2p:A (0.99) BS01 BGC ? N/A B3Y002 26601228
    1258 3x2p:A (0.99) BS02 BGC ? N/A B3Y002 26601228
    1259 3x2p:A (0.99) BS03 BGC ? N/A B3Y002 26601228
    1260 3x2p:A (0.99) BS04 BGC ? N/A B3Y002 26601228
    1261 3zmr:A (1.43) BS01 BGC 3.2.1.151 GO:0000272 ... A7LXT7 24463512
    1262 3zmr:B (1.43) BS02 BGC 3.2.1.151 GO:0000272 ... A7LXT7 24463512
    1263 3zq9:A (1.86) BS02 BGC 3.2.1.151'
    '3.2.1.4
    N/A Q1A2D0 21795708 PDBbind: -logKd/Ki=6.02, Ki=0.95uM
    1264 3zsj:A (0.86) BS01 BGC ? GO:0030246 ... P17931 22111949
    1265 3zwe:B (1.75) BS01 BGC ? N/A Q0B4G1 22170069
    1266 3zyz:A (2.1) BS01 BGC 3.2.1.21 GO:0000272 ... Q12715 25164811
    1267 4a05:A (1.9) BS01 BGC 3.2.1.- GO:0004553 ... G0SD43 22868752
    1268 4a05:A (1.9) BS02 BGC 3.2.1.- GO:0004553 ... G0SD43 22868752
    1269 4a05:A (1.9) BS03 BGC 3.2.1.- GO:0004553 ... G0SD43 22868752
    1270 4a05:A (1.9) BS04 BGC 3.2.1.- GO:0004553 ... G0SD43 22868752
    1271 4a05:A (1.9) BS05 BGC 3.2.1.- GO:0004553 ... G0SD43 22868752
    1272 4af9:A (1.5) BS01 BGC ? N/A Q6VBJ0 23035251
    1273 4afd:A (1.34) BS01 BGC ? N/A Q3LHN3 23229556
    1274 4afd:A (1.34) BS02 BGC ? N/A Q3LHN3 23229556
    1275 4atl:A (2.52) BS01 BGC 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22704651
    1276 4atl:B (2.52) BS01 BGC 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22704651
    1277 4au0:A (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1278 4au0:A (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1279 4au0:B (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1280 4au0:B (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1281 4au0:B (1.7) BS10 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1282 4avn:A (2.0) BS01 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1283 4avn:A (2.0) BS02 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1284 4avn:A (2.0) BS03 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1285 4avn:A (2.0) BS04 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1286 4avn:A (2.0) BS05 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1287 4avo:A (1.8) BS01 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1288 4avo:A (1.8) BS02 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1289 4avo:A (1.8) BS03 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1290 4avo:A (1.8) BS04 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1291 4avo:A (1.8) BS05 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1292 4avo:A (1.8) BS06 BGC 3.2.1.- GO:0004553 ... Q47SA9 24085303
    1293 4ax6:A (2.3) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1294 4ax6:A (2.3) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1295 4ax6:B (2.3) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1296 4ax6:B (2.3) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1297 4ax7:A (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1298 4ax7:A (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1299 4ax7:A (1.7) BS03 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1300 4ax7:A (1.7) BS04 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1301 4ax7:B (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1302 4ax7:B (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1303 4ax7:C (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1304 4ax7:C (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1305 4ax7:C (1.7) BS03 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1306 4ax7:C (1.7) BS04 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1307 4ax7:D (1.7) BS01 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1308 4ax7:D (1.7) BS02 BGC 3.2.1.91 GO:0004553 ... P07987 23137336
    1309 4ayj:A (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    1310 4ayj:B (3.0) BS01 BGC N/A GO:0005975 ... N/A 23230506
    1311 4ayj:B (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    1312 4ayj:C (3.0) BS02 BGC N/A GO:0005975 ... N/A 23230506
    1313 4b21:A (1.45) BS03 BGC 3.2.2.21 GO:0000725 ... O94468 23245849
    1314 4b4f:A (2.2) BS01 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1315 4b4f:A (2.2) BS02 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1316 4b4f:A (2.2) BS03 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1317 4b4f:A (2.2) BS04 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1318 4b4f:A (2.2) BS05 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1319 4b4f:A (2.2) BS06 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1320 4b4f:B (2.2) BS01 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1321 4b4f:B (2.2) BS02 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1322 4b4f:B (2.2) BS03 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1323 4b4f:B (2.2) BS04 BGC 3.2.1.- GO:0004553 ... Q60029 23220193
    1324 4bga:B (2.6) BS01 BGC ? GO:0000166 ... Q8TX37 24311585
    1325 4bj0:A (1.0) BS01 BGC 3.2.1.8 GO:0016798 ... Q6V8M0 25302425
    1326 4bj0:A (1.0) BS02 BGC 3.2.1.8 GO:0016798 ... Q6V8M0 25302425
    1327 4bj0:A (1.0) BS03 BGC 3.2.1.8 GO:0016798 ... Q6V8M0 25302425
    1328 4bmb:A (1.351) BS01 BGC ? GO:0030246 ... O00214 24418318
    1329 4bow:A (1.35) BS02 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1330 4bow:A (1.35) BS03 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1331 4bow:B (1.35) BS01 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1332 4bow:B (1.35) BS02 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1333 4bow:B (1.35) BS04 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1334 4bpz:A (1.13) BS02 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1335 4bpz:A (1.13) BS03 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1336 4bpz:B (1.13) BS02 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1337 4bpz:B (1.13) BS03 BGC 3.2.1.39 GO:0004553 ... G0L5X4 24337571
    1338 4c4c:A (1.45) BS01 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1339 4c4c:A (1.45) BS02 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1340 4c4c:A (1.45) BS03 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1341 4c4c:A (1.45) BS04 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1342 4c4c:A (1.45) BS05 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1343 4c4c:A (1.45) BS06 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1344 4c4c:A (1.45) BS07 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1345 4c4c:A (1.45) BS08 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1346 4c4c:A (1.45) BS09 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1347 4c4d:A (1.32) BS01 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1348 4c4d:A (1.32) BS02 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1349 4c4d:A (1.32) BS04 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1350 4c4d:A (1.32) BS05 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1351 4c4d:A (1.32) BS06 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1352 4c4d:A (1.32) BS07 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1353 4c4d:A (1.32) BS08 BGC 3.2.1.91 GO:0004553 ... P62694 24341799
    1354 4cn6:A (2.29) BS01 BGC 2.4.99.16 GO:0004553 ... Q9L1K2 24689960
    1355 4cn6:B (2.29) BS01 BGC 2.4.99.16 GO:0004553 ... Q9L1K2 24689960
    1356 4cp0:A (2.15) BS01 BGC ? N/A B4UMX2 N/A
    1357 4cte:B (1.8) BS03 BGC 3.2.1.39 GO:0004553 ... G0L2L9 25664729
    1358 4dgr:A (1.551) BS02 BGC 3.2.1.18 GO:0004308 ... P03472 22559154
    1359 4dgr:A (1.551) BS03 BGC 3.2.1.18 GO:0004308 ... P03472 22559154
    1360 4do6:A (1.6) BS03 BGC 3.2.1.49 GO:0004553 ... P17050 23045655
    1361 4do6:B (1.6) BS02 BGC 3.2.1.49 GO:0004553 ... P17050 23045655
    1362 4doe:A (1.561) BS01 BGC 3.2.1.4 GO:0004553 ... P96311 24357319
    1363 4doe:A (1.561) BS02 BGC 3.2.1.4 GO:0004553 ... P96311 24357319
    1364 4doe:A (1.561) BS03 BGC 3.2.1.4 GO:0004553 ... P96311 24357319
    1365 4doe:A (1.561) BS04 BGC 3.2.1.4 GO:0004553 ... P96311 24357319
    1366 4duw:A (2.2) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 23486479
    1367 4duw:B (2.2) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 23486479
    1368 4duw:C (2.2) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 23486479
    1369 4duw:D (2.2) BS01 BGC 3.2.1.23 GO:0000287 ... P00722 23486479
    1370 4dx2:A (2.95) BS01 BGC ? GO:0005216 ... Q9HBA0 22702953
    1371 4e2o:A (2.103) BS02 BGC N/A GO:0004556 ... N/A 23683704
    1372 4ek7:A (2.3) BS01 BGC 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22704651
    1373 4ek7:B (2.3) BS01 BGC 2.4.1.219
    3.2.1.125
    GO:0004553 ... Q9SPP9 22704651
    1374 4eng:A (1.9) BS02 BGC 3.2.1.4 GO:0005975 ... P43316 15299721
    1375 4eng:A (1.9) BS04 BGC 3.2.1.4 GO:0005975 ... P43316 15299721
    1376 4eng:A (1.9) BS05 BGC 3.2.1.4 GO:0005975 ... P43316 15299721
    1377 4ezc:A (2.36) BS01 BGC ? GO:0005886 ... Q5QF96 22733730
    1378 4ezc:A (2.36) BS02 BGC ? GO:0005886 ... Q5QF96 22733730
    1379 4ezc:B (2.36) BS02 BGC ? GO:0005886 ... Q5QF96 22733730
    1380 4ezd:A (2.5) BS03 BGC ? GO:0005886 ... Q5QF96 22733730
    1381 4ezd:A (2.5) BS04 BGC ? GO:0005886 ... Q5QF96 22733730
    1382 4ezd:B (2.5) BS04 BGC ? GO:0005886 ... Q5QF96 22733730
    1383 4ezd:C (2.5) BS05 BGC ? GO:0005886 ... Q5QF96 22733730
    1384 4f9o:A (2.65) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1385 4f9o:A (2.65) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1386 4f9o:B (2.65) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1387 4f9o:B (2.65) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1388 4fer:A (2.099) BS01 BGC ? GO:0005576 ... O34918 22927418
    1389 4fer:A (2.099) BS02 BGC ? GO:0005576 ... O34918 22927418
    1390 4fft:A (2.1) BS01 BGC ? GO:0005576 ... O34918 22927418
    1391 4fg2:A (2.099) BS01 BGC ? GO:0005576 ... O34918 22927418
    1392 4fg2:B (2.099) BS01 BGC ? GO:0005576 ... O34918 22927418
    1393 4foe:A (2.7) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1394 4foe:A (2.7) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1395 4foe:B (2.7) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1396 4foe:B (2.7) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1397 4foi:A (2.4) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1398 4foi:A (2.4) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1399 4foi:B (2.4) BS01 BGC 2.7.1.1 GO:0001678 ... P19367 N/A
    1400 4foi:B (2.4) BS03 BGC 2.7.1.1 GO:0001678 ... P19367 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218