Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 3964 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 9 10 11 12 13 14 15 16 17 18 19 20 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 8g2j:D (3.3) BS05 BGC 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    3602 8g2j:I (3.3) BS01 BGC 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    3603 8g2j:I (3.3) BS02 BGC 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    3604 8g2j:I (3.3) BS03 BGC 2.4.1.12 GO:0005802 ... Q6J8X0 36798277
    3605 8ghy:A (1.8) BS01 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    3606 8ghy:A (1.8) BS02 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    3607 8ghy:B (1.8) BS01 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    3608 8ghy:B (1.8) BS02 BGC ? GO:0000272 ... A0A1Y1V643 37548665
    3609 8h2w:A (1.21) BS01 BGC ? GO:0003824 ... Q93HT8 N/A
    3610 8h2w:A (1.21) BS02 BGC ? GO:0003824 ... Q93HT8 N/A
    3611 8h2w:A (1.21) BS03 BGC ? GO:0003824 ... Q93HT8 N/A
    3612 8h2w:B (1.21) BS01 BGC ? GO:0003824 ... Q93HT8 N/A
    3613 8h2w:B (1.21) BS02 BGC ? GO:0003824 ... Q93HT8 N/A
    3614 8h2w:B (1.21) BS03 BGC ? GO:0003824 ... Q93HT8 N/A
    3615 8ho8:A (2.24) BS01 BGC 2.4.1.20 GO:0003824 ... Q8VP44 N/A
    3616 8ho8:A (2.24) BS02 BGC 2.4.1.20 GO:0003824 ... Q8VP44 N/A
    3617 8ho8:B (2.24) BS01 BGC 2.4.1.20 GO:0003824 ... Q8VP44 N/A
    3618 8ho8:B (2.24) BS02 BGC 2.4.1.20 GO:0003824 ... Q8VP44 N/A
    3619 8hqq:A (1.86) BS01 BGC ? GO:0015768 ... Q4FMK2 39261732
    3620 8hw3:A (2.66) BS02 BGC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    3621 8hw3:B (2.66) BS02 BGC 2.4.1.5 GO:0009250 ... A0A848PDI7 38427803
    3622 8i5p:A (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3623 8i5p:A (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3624 8i5p:B (2.35) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3625 8i5p:B (2.35) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3626 8i5q:A (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3627 8i5q:A (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3628 8i5q:B (2.2) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3629 8i5q:B (2.2) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3630 8i5t:A (1.5) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3631 8i5t:A (1.5) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3632 8i5u:A (1.4) BS01 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3633 8i5u:A (1.4) BS02 BGC 3.2.1.45 GO:0004348 ... F6BL85 37180965
    3634 8inp:A (2.12) BS02 BGC N/A GO:0008194 ... N/A 37581303
    3635 8ip1:A (2.06) BS01 BGC ? GO:0003824 ... P40120 37735577
    3636 8ip1:A (2.06) BS02 BGC ? GO:0003824 ... P40120 37735577
    3637 8ip1:A (2.06) BS03 BGC ? GO:0003824 ... P40120 37735577
    3638 8ip1:A (2.06) BS04 BGC ? GO:0003824 ... P40120 37735577
    3639 8ip1:A (2.06) BS05 BGC ? GO:0003824 ... P40120 37735577
    3640 8ip1:A (2.06) BS06 BGC ? GO:0003824 ... P40120 37735577
    3641 8ip1:A (2.06) BS07 BGC ? GO:0003824 ... P40120 37735577
    3642 8ip1:B (2.06) BS01 BGC ? GO:0003824 ... P40120 37735577
    3643 8ip1:B (2.06) BS02 BGC ? GO:0003824 ... P40120 37735577
    3644 8ip1:B (2.06) BS03 BGC ? GO:0003824 ... P40120 37735577
    3645 8ip1:B (2.06) BS04 BGC ? GO:0003824 ... P40120 37735577
    3646 8ip1:B (2.06) BS05 BGC ? GO:0003824 ... P40120 37735577
    3647 8ip1:B (2.06) BS06 BGC ? GO:0003824 ... P40120 37735577
    3648 8ip1:B (2.06) BS07 BGC ? GO:0003824 ... P40120 37735577
    3649 8ip1:B (2.06) BS08 BGC ? GO:0003824 ... P40120 37735577
    3650 8ip2:A (1.81) BS01 BGC ? GO:0003824 ... P33136 37735577
    3651 8ip2:A (1.81) BS02 BGC ? GO:0003824 ... P33136 37735577
    3652 8ip2:A (1.81) BS03 BGC ? GO:0003824 ... P33136 37735577
    3653 8ip2:A (1.81) BS04 BGC ? GO:0003824 ... P33136 37735577
    3654 8ip2:A (1.81) BS05 BGC ? GO:0003824 ... P33136 37735577
    3655 8ip2:A (1.81) BS06 BGC ? GO:0003824 ... P33136 37735577
    3656 8ip2:A (1.81) BS07 BGC ? GO:0003824 ... P33136 37735577
    3657 8ip2:A (1.81) BS08 BGC ? GO:0003824 ... P33136 37735577
    3658 8ip2:A (1.81) BS09 BGC ? GO:0003824 ... P33136 37735577
    3659 8iq9:A (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    3660 8iq9:A (1.58) BS04 BGC ? N/A A0A6M3YLW2 38349137
    3661 8iq9:A (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    3662 8iq9:B (1.58) BS01 BGC ? N/A A0A6M3YLW2 38349137
    3663 8iq9:B (1.58) BS03 BGC ? N/A A0A6M3YLW2 38349137
    3664 8iq9:B (1.58) BS05 BGC ? N/A A0A6M3YLW2 38349137
    3665 8iq9:C (1.58) BS02 BGC ? N/A A0A6M3YLW2 38349137
    3666 8iq9:C (1.58) BS06 BGC ? N/A A0A6M3YLW2 38349137
    3667 8iu9:A (1.8) BS02 BGC ? GO:0016787 ... A5FBI2 37269952
    3668 8iua:A (1.8) BS03 BGC ? GO:0016787 ... A5FBI2 37269952
    3669 8iuc:A (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    3670 8iuc:B (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    3671 8iuc:C (1.56) BS01 BGC ? GO:0003824 ... A5FBJ5 37269952
    3672 8ivy:A (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... P26208 37558019
    3673 8ivy:B (1.95) BS01 BGC 3.2.1.21 GO:0004553 ... P26208 37558019
    3674 8j3y:A (1.28) BS01 BGC ? GO:0030246 ... Q21KS2 N/A
    3675 8j3y:A (1.28) BS02 BGC ? GO:0030246 ... Q21KS2 N/A
    3676 8j3y:A (1.28) BS03 BGC ? GO:0030246 ... Q21KS2 N/A
    3677 8j3y:A (1.28) BS04 BGC ? GO:0030246 ... Q21KS2 N/A
    3678 8j3y:A (1.28) BS05 BGC ? GO:0030246 ... Q21KS2 N/A
    3679 8j3y:A (1.28) BS06 BGC ? GO:0030246 ... Q21KS2 N/A
    3680 8j3y:A (1.28) BS07 BGC ? GO:0030246 ... Q21KS2 N/A
    3681 8j3y:A (1.28) BS08 BGC ? GO:0030246 ... Q21KS2 N/A
    3682 8j3y:B (1.28) BS01 BGC ? GO:0030246 ... Q21KS2 N/A
    3683 8j3y:B (1.28) BS02 BGC ? GO:0030246 ... Q21KS2 N/A
    3684 8j3y:B (1.28) BS03 BGC ? GO:0030246 ... Q21KS2 N/A
    3685 8j3y:B (1.28) BS04 BGC ? GO:0030246 ... Q21KS2 N/A
    3686 8j3y:B (1.28) BS05 BGC ? GO:0030246 ... Q21KS2 N/A
    3687 8j3y:B (1.28) BS06 BGC ? GO:0030246 ... Q21KS2 N/A
    3688 8j3y:B (1.28) BS07 BGC ? GO:0030246 ... Q21KS2 N/A
    3689 8j3y:B (1.28) BS08 BGC ? GO:0030246 ... Q21KS2 N/A
    3690 8jmi:A (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    3691 8jmi:B (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    3692 8jmi:C (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    3693 8jmi:D (2.6) BS01 BGC ? GO:0001582 ... P83293 38305684
    3694 8kaq:A (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    3695 8kaq:A (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    3696 8kaq:A (2.13) BS03 BGC N/A N/A B1W1N0 N/A
    3697 8kaq:B (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    3698 8kaq:C (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    3699 8kaq:C (2.13) BS02 BGC N/A N/A B1W1N0 N/A
    3700 8kaq:C (2.13) BS03 BGC N/A N/A B1W1N0 N/A
    3701 8kaq:D (2.13) BS01 BGC N/A N/A B1W1N0 N/A
    3702 8qsr:A (2.56) BS01 BGC N/A N/A P69786 N/A
    3703 8qsr:B (2.56) BS01 BGC N/A N/A P69786 N/A
    3704 8qst:A (2.89) BS01 BGC N/A N/A P69786 N/A
    3705 8qst:B (2.89) BS01 BGC N/A N/A P69786 N/A
    3706 8qx6:A (1.9) BS01 BGC N/A N/A A0M709 38757353
    3707 8qx6:A (1.9) BS02 BGC N/A N/A A0M709 38757353
    3708 8qx6:A (1.9) BS03 BGC N/A N/A A0M709 38757353
    3709 8qx6:B (1.9) BS01 BGC N/A N/A A0M709 38757353
    3710 8qx6:B (1.9) BS02 BGC N/A N/A A0M709 38757353
    3711 8qx6:B (1.9) BS03 BGC N/A N/A A0M709 38757353
    3712 8rf0:A (3.4) BS01 BGC N/A GO:0003824 ... N/A 38418509
    3713 8rf0:A (3.4) BS02 BGC N/A GO:0003824 ... N/A 38418509
    3714 8rf0:A (3.4) BS03 BGC N/A GO:0003824 ... N/A 38418509
    3715 8rf0:A (3.4) BS04 BGC N/A GO:0003824 ... N/A 38418509
    3716 8rfe:A (3.8) BS01 BGC N/A GO:0003824 ... N/A 38418509
    3717 8rfe:A (3.8) BS02 BGC N/A GO:0003824 ... N/A 38418509
    3718 8rfe:A (3.8) BS03 BGC N/A GO:0003824 ... N/A 38418509
    3719 8rfe:A (3.8) BS04 BGC N/A GO:0003824 ... N/A 38418509
    3720 8rfg:A (3.35) BS01 BGC N/A GO:0003824 ... N/A 38418509
    3721 8rfg:A (3.35) BS02 BGC N/A GO:0003824 ... N/A 38418509
    3722 8rfg:A (3.35) BS03 BGC N/A GO:0003824 ... N/A 38418509
    3723 8rfg:A (3.35) BS04 BGC N/A GO:0003824 ... N/A 38418509
    3724 8rfg:A (3.35) BS05 BGC N/A GO:0003824 ... N/A 38418509
    3725 8rfg:A (3.35) BS06 BGC N/A GO:0003824 ... N/A 38418509
    3726 8rfg:A (3.35) BS07 BGC N/A GO:0003824 ... N/A 38418509
    3727 8rfg:A (3.35) BS08 BGC N/A GO:0003824 ... N/A 38418509
    3728 8rfg:A (3.35) BS09 BGC N/A GO:0003824 ... N/A 38418509
    3729 8rfg:A (3.35) BS10 BGC N/A GO:0003824 ... N/A 38418509
    3730 8u3n:A (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    3731 8u3n:B (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    3732 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    3733 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3734 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3735 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3736 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3737 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3738 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    3739 8vba:A (3.29) BS01 BGC N/A N/A Q29XT7 N/A
    3740 8vba:A (3.29) BS02 BGC N/A N/A Q29XT7 N/A
    3741 8vba:A (3.29) BS03 BGC N/A N/A Q29XT7 N/A
    3742 8vba:A (3.29) BS04 BGC N/A N/A Q29XT7 N/A
    3743 8vba:A (3.29) BS05 BGC N/A N/A Q29XT7 N/A
    3744 8vba:A (3.29) BS06 BGC N/A N/A Q29XT7 N/A
    3745 8vba:A (3.29) BS07 BGC N/A N/A Q29XT7 N/A
    3746 8vba:A (3.29) BS08 BGC N/A N/A Q29XT7 N/A
    3747 8vba:A (3.29) BS09 BGC N/A N/A Q29XT7 N/A
    3748 8vba:A (3.29) BS10 BGC N/A N/A Q29XT7 N/A
    3749 8vba:A (3.29) BS11 BGC N/A N/A Q29XT7 N/A
    3750 8vba:A (3.29) BS12 BGC N/A N/A Q29XT7 N/A
    3751 8vba:A (3.29) BS13 BGC N/A N/A Q29XT7 N/A
    3752 8vba:A (3.29) BS14 BGC N/A N/A Q29XT7 N/A
    3753 8vba:A (3.29) BS15 BGC N/A N/A Q29XT7 N/A
    3754 8vba:A (3.29) BS16 BGC N/A N/A Q29XT7 N/A
    3755 8vba:A (3.29) BS17 BGC N/A N/A Q29XT7 N/A
    3756 8vba:A (3.29) BS18 BGC N/A N/A Q29XT7 N/A
    3757 8vba:A (3.29) BS19 BGC N/A N/A Q29XT7 N/A
    3758 8vba:A (3.29) BS20 BGC N/A N/A Q29XT7 N/A
    3759 8vba:A (3.29) BS21 BGC N/A N/A Q29XT7 N/A
    3760 8vba:A (3.29) BS22 BGC N/A N/A Q29XT7 N/A
    3761 8vba:A (3.29) BS23 BGC N/A N/A Q29XT7 N/A
    3762 8vba:A (3.29) BS24 BGC N/A N/A Q29XT7 N/A
    3763 8vba:A (3.29) BS25 BGC N/A N/A Q29XT7 N/A
    3764 8vba:A (3.29) BS26 BGC N/A N/A Q29XT7 N/A
    3765 8vba:A (3.29) BS27 BGC N/A N/A Q29XT7 N/A
    3766 8vba:H (3.29) BS01 BGC N/A N/A N/A N/A
    3767 8vbb:A (3.97) BS01 BGC N/A N/A Q29XT7 N/A
    3768 8vbb:A (3.97) BS02 BGC N/A N/A Q29XT7 N/A
    3769 8vbb:A (3.97) BS03 BGC N/A N/A Q29XT7 N/A
    3770 8vbb:A (3.97) BS04 BGC N/A N/A Q29XT7 N/A
    3771 8vbb:A (3.97) BS05 BGC N/A N/A Q29XT7 N/A
    3772 8vbb:A (3.97) BS06 BGC N/A N/A Q29XT7 N/A
    3773 8vbb:A (3.97) BS07 BGC N/A N/A Q29XT7 N/A
    3774 8vbb:A (3.97) BS08 BGC N/A N/A Q29XT7 N/A
    3775 8vbb:A (3.97) BS09 BGC N/A N/A Q29XT7 N/A
    3776 8vbb:A (3.97) BS10 BGC N/A N/A Q29XT7 N/A
    3777 8vbb:A (3.97) BS11 BGC N/A N/A Q29XT7 N/A
    3778 8vbb:A (3.97) BS12 BGC N/A N/A Q29XT7 N/A
    3779 8vbb:A (3.97) BS13 BGC N/A N/A Q29XT7 N/A
    3780 8vbb:A (3.97) BS14 BGC N/A N/A Q29XT7 N/A
    3781 8vbb:A (3.97) BS15 BGC N/A N/A Q29XT7 N/A
    3782 8vbb:A (3.97) BS16 BGC N/A N/A Q29XT7 N/A
    3783 8vbb:A (3.97) BS17 BGC N/A N/A Q29XT7 N/A
    3784 8vbb:A (3.97) BS18 BGC N/A N/A Q29XT7 N/A
    3785 8vbb:A (3.97) BS19 BGC N/A N/A Q29XT7 N/A
    3786 8vbb:A (3.97) BS20 BGC N/A N/A Q29XT7 N/A
    3787 8vbb:A (3.97) BS21 BGC N/A N/A Q29XT7 N/A
    3788 8vbb:A (3.97) BS22 BGC N/A N/A Q29XT7 N/A
    3789 8vbb:A (3.97) BS23 BGC N/A N/A Q29XT7 N/A
    3790 8vbb:A (3.97) BS24 BGC N/A N/A Q29XT7 N/A
    3791 8vbb:A (3.97) BS25 BGC N/A N/A Q29XT7 N/A
    3792 8vbb:A (3.97) BS26 BGC N/A N/A Q29XT7 N/A
    3793 8vbb:A (3.97) BS27 BGC N/A N/A Q29XT7 N/A
    3794 8vbb:A (3.97) BS28 BGC N/A N/A Q29XT7 N/A
    3795 8vbb:A (3.97) BS29 BGC N/A N/A Q29XT7 N/A
    3796 8vbb:A (3.97) BS30 BGC N/A N/A Q29XT7 N/A
    3797 8vbb:A (3.97) BS31 BGC N/A N/A Q29XT7 N/A
    3798 8vbb:A (3.97) BS32 BGC N/A N/A Q29XT7 N/A
    3799 8vbb:H (3.97) BS01 BGC N/A N/A N/A N/A
    3800 8xpk:A (2.0) BS02 BGC N/A N/A N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417