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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dth:A (2.0) BS03 BAT 3.4.24.42 GO:0004222 ... P15167 8610113 MOAD: ic50=6nM
    PDBbind: -logKd/Ki=8.22, IC50=6nM
    2 1dth:B (2.0) BS03 BAT 3.4.24.42 GO:0004222 ... P15167 8610113 MOAD: ic50=6nM
    3 1jk3:A (1.09) BS06 BAT 3.4.24.65 GO:0004222 ... P39900 11575928
    4 1mmb:A (2.1) BS05 BAT 3.4.24.34 GO:0004222 ... P22894 7577999
    5 1rm8:A (1.8) BS05 BAT 3.4.24.- GO:0004222 ... P51512 14741217 PDBbind: -logKd/Ki=9.00, Ki=1nM
    6 2j83:A (2.0) BS01 BAT 3.4.24.- GO:0008237 ... Q8TL28 17097044 MOAD: ic50=61uM
    PDBbind: -logKd/Ki=4.21, IC50=61uM
    7 2j83:B (2.0) BS01 BAT 3.4.24.- GO:0008237 ... Q8TL28 17097044 MOAD: ic50=61uM
    PDBbind: -logKd/Ki=4.21, IC50=61uM
    8 2rjq:A (2.6) BS04 BAT 3.4.24.- GO:0004222 ... Q9UNA0 18042673
    9 4dd8:A (2.1) BS01 BAT 3.4.24.- GO:0004222 ... P78325 22684055
    10 4dd8:A (2.1) BS04 BAT 3.4.24.- GO:0004222 ... P78325 22684055
    11 4dd8:B (2.1) BS01 BAT 3.4.24.- GO:0004222 ... P78325 22684055
    12 4dd8:C (2.1) BS01 BAT 3.4.24.- GO:0004222 ... P78325 22684055
    13 4dd8:D (2.1) BS01 BAT 3.4.24.- GO:0004222 ... P78325 22684055
    14 7w6x:A (3.2) BS02 BAT 3.4.24.- GO:0004175 ... P0AEH1 36001659
    15 7w6y:A (3.1) BS02 BAT 3.4.24.- GO:0004222 ... C7R5Z1 36001659
    16 7w6z:A (3.15) BS02 BAT 3.4.24.- GO:0004222 ... C7R5Z1 36001659
    17 8esv:A (3.3) BS03 BAT 3.4.24.81 GO:0004222 ... O14672 37516108
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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