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BioLiP
Download all results in tab-seperated text for 60 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2ajc:A (1.95) BS01 AES 3.4.14.5 GO:0002020 ... P22411 16330047
    2 2ajc:B (1.95) BS01 AES 3.4.14.5 GO:0002020 ... P22411 16330047
    3 2ajc:C (1.95) BS01 AES 3.4.14.5 GO:0002020 ... P22411 16330047
    4 2ajc:D (1.95) BS01 AES 3.4.14.5 GO:0002020 ... P22411 16330047
    5 2b4r:O (2.25) BS02 AES 1.2.1.12 GO:0000166 ... Q8T6B1 16345073
    6 2b4r:P (2.25) BS02 AES 1.2.1.12 GO:0000166 ... Q8T6B1 16345073
    7 2b4t:O (2.5) BS02 AES 1.2.1.12 GO:0000166 ... Q8T6B1 16345073
    8 2oua:A (1.85) BS01 AES ? GO:0004252 ... Q6K1C5 17382344
    9 2oua:B (1.85) BS01 AES ? GO:0004252 ... Q6K1C5 17382344
    10 2pfe:A (1.436) BS01 AES ? GO:0004252 ... Q47SP5 17543987
    11 2pfe:B (1.436) BS01 AES ? GO:0004252 ... Q47SP5 17543987
    12 3b2q:B (2.1) BS02 AES 3.6.3.14 GO:0005524 ... Q60187 19003877
    13 3eiu:B (3.43) BS02 AES 3.6.3.14 GO:0005524 ... Q60187 19138746
    14 3n33:A (1.8) BS01 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    15 3n33:A (1.8) BS02 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    16 3n33:A (1.8) BS03 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    17 3n33:A (1.8) BS04 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    18 3n33:B (1.8) BS01 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    19 3n33:B (1.8) BS02 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    20 3n33:B (1.8) BS03 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    21 3n33:B (1.8) BS04 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    22 3n33:C (1.8) BS01 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    23 3n33:C (1.8) BS02 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    24 3n33:C (1.8) BS03 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    25 3n33:C (1.8) BS04 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    26 3n33:D (1.8) BS01 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    27 3n33:D (1.8) BS02 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    28 3n33:D (1.8) BS03 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    29 3n33:D (1.8) BS04 AES 3.4.11.25 GO:0004177 ... Q52VH2 22980995
    30 3pro:A (1.8) BS01 AES 3.4.21.12 GO:0004252 ... P00778 9808037
    31 3pro:B (1.8) BS01 AES 3.4.21.12 GO:0004252 ... P00778 9808037
    32 3pro:C (1.8) BS01 AES 3.4.21.12 GO:0005576 ... P00778 9808037
    33 3pro:D (1.8) BS01 AES 3.4.21.12 GO:0005576 ... P00778 9808037
    34 3tgw:B (1.75) BS01 AES 3.6.3.14 GO:0005524 ... Q60187 N/A
    35 3tiv:B (1.75) BS01 AES 3.6.3.14 GO:0005524 ... Q60187 N/A
    36 4dq5:A (1.395) BS01 AES ? N/A Q283U5 23209446
    37 4dq5:A (1.395) BS02 AES ? N/A Q283U5 23209446
    38 4dq5:B (1.395) BS01 AES ? N/A Q283U5 23209446
    39 4dq5:B (1.395) BS02 AES ? N/A Q283U5 23209446
    40 4dqj:A (1.23) BS01 AES ? N/A Q283U5 23209446
    41 4f8l:A (1.5) BS02 AES ? N/A P31522 23277582
    42 4f8o:A (1.9) BS02 AES ? N/A P31522 23277582
    43 5dac:A (2.503) BS04 AES 3.6.-.- GO:0006302 ... G0SHW7 26896444
    44 5dac:B (2.503) BS04 AES 3.6.-.- GO:0006302 ... G0SHW7 26896444
    45 5mrs:A (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    46 5mrs:B (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    47 5mrs:C (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    48 5mrs:D (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    49 5rc7:A (0.97) BS01 AES 3.4.23.22 GO:0004190 ... P11838 32413289
    50 5xya:A (3.0) BS01 AES 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    51 6qoy:A (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    52 6qoy:B (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    53 6qoy:C (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    54 6qoy:D (1.9) BS01 AES ? GO:0004252 ... D2K8B3 N/A
    55 6xyc:A (1.85) BS01 AES N/A N/A N/A 34059129
    56 8cd8:A (1.65) BS05 AES 3.4.24.- GO:0006508 ... Q8TL28 36857690
    57 8cd8:C (1.65) BS05 AES 3.4.24.- GO:0006508 ... Q8TL28 36857690
    58 8cfq:A (1.73) BS03 AES 3.13.2.1 GO:0004013 ... Q9I685 N/A
    59 8cfq:A (1.73) BS04 AES 3.13.2.1 GO:0004013 ... Q9I685 N/A
    60 8cfq:C (1.73) BS04 AES 3.13.2.1 GO:0004013 ... Q9I685 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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