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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8401 7vcu:G (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8402 7vcu:H (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8403 7vcu:I (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8404 7vcu:J (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8405 7vcu:K (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8406 7vcu:L (3.15) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 35190543
    8407 7vdt:A (2.8) BS04 ADP 3.6.4.- GO:0005524 ... P51532 35477757
    8408 7vdv:A (3.4) BS05 ADP 3.6.4.- GO:0005524 ... P51532 35477757
    8409 7vlr:A (3.4) BS02 ADP ? GO:0000165 ... Q63563 35562524
    8410 7vls:A (3.3) BS02 ADP ? GO:0000165 ... Q63563 35562524
    8411 7vlt:A (3.1) BS03 ADP ? GO:0000165 ... Q63563 35562524
    8412 7vlu:A (3.3) BS02 ADP ? GO:0000165 ... Q63563 35562524
    8413 7vpj:A (3.54) BS01 ADP 7.6.2.- GO:0000166 ... Q9NQ11 34798056
    8414 7vtp:A (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8415 7vtp:B (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8416 7vtp:C (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8417 7vtp:D (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8418 7vtp:E (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8419 7vtp:F (3.23) BS01 ADP 3.6.4.- N/A Q96P20 35254907
    8420 7vtq:A (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8421 7vtq:B (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8422 7vtq:C (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8423 7vtq:D (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8424 7vtq:E (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8425 7vtq:F (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8426 7vtq:G (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8427 7vtq:H (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8428 7vtq:I (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8429 7vtq:J (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8430 7vtq:K (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8431 7vtq:L (3.55) BS01 ADP 3.6.4.- GO:0000139 ... Q8R4B8 35254907
    8432 7vuk:A (3.38) BS01 ADP 3.1.-.- GO:0005524 ... Q5SHT5 35439431
    8433 7vuk:B (3.38) BS01 ADP 3.1.-.- GO:0005524 ... Q5SHT5 35439431
    8434 7vw7:B (3.818) BS01 ADP 7.1.2.2 GO:0005524 ... A0A1V8WY35 35912346
    8435 7vw7:C (3.818) BS01 ADP 7.1.2.2 GO:0005524 ... A0A1V8WY35 35912346
    8436 7vw7:F (3.818) BS01 ADP ? GO:0000166 ... A0A1V8XC32 35912346
    8437 7vwl:w (2.7) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8438 7vxs:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8439 7vy1:w (3.3) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8440 7vy9:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8441 7vye:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8442 7vyg:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8443 7vyi:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8444 7vys:w (2.5) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8445 7vz8:w (2.7) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8446 7vzv:w (3.2) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8447 7vzw:w (3.2) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8448 7w00:w (3.5) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8449 7w0c:A (3.93) BS04 ADP 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    8450 7w0d:A (4.18) BS04 ADP 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    8451 7w0d:F (4.18) BS05 ADP 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    8452 7w0e:A (4.03) BS05 ADP 3.1.26.3 GO:0002230 ... A1ZAW0 35768513
    8453 7w0h:w (3.4) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8454 7w0r:w (2.8) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8455 7w0y:w (3.4) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8456 7w1m:A (6.5) BS02 ADP ? GO:0000070 ... Q14683 37536339
    8457 7w1m:A (6.5) BS03 ADP ? GO:0000070 ... Q14683 37536339
    8458 7w1m:B (6.5) BS01 ADP ? GO:0000278 ... Q9UQE7 37536339
    8459 7w1m:B (6.5) BS02 ADP ? GO:0000278 ... Q9UQE7 37536339
    8460 7w1o:w (3.5) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8461 7w1p:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8462 7w1t:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8463 7w1u:w (3.2) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8464 7w1v:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8465 7w1y:2 (2.59) BS04 ADP 3.6.4.12 GO:0000727 ... P49736 36608662
    8466 7w1y:4 (2.59) BS05 ADP 3.6.4.12 GO:0000727 ... P33991 36608662
    8467 7w1y:5 (2.59) BS04 ADP 3.6.4.12 GO:0000727 ... P33992 36608662
    8468 7w1y:6 (2.59) BS04 ADP 3.6.4.12 GO:0000727 ... Q14566 36608662
    8469 7w1y:A (2.59) BS04 ADP 3.6.4.12 GO:0000727 ... P49736 36608662
    8470 7w1y:C (2.59) BS05 ADP 3.6.4.12 GO:0000727 ... P33991 36608662
    8471 7w1y:D (2.59) BS04 ADP 3.6.4.12 GO:0000727 ... P33992 36608662
    8472 7w1y:E (2.59) BS03 ADP 3.6.4.12 GO:0000727 ... Q14566 36608662
    8473 7w1z:w (2.6) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8474 7w20:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8475 7w2k:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8476 7w2l:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8477 7w2r:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8478 7w2u:w (2.6) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8479 7w2y:w (2.7) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8480 7w31:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8481 7w32:w (2.9) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8482 7w35:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8483 7w37:C (3.0) BS01 ADP ? GO:0000502 ... P62195 35477760
    8484 7w37:F (3.0) BS02 ADP ? GO:0000502 ... P17980 35477760
    8485 7w38:C (3.1) BS01 ADP ? GO:0000502 ... P62195 35477760
    8486 7w38:F (3.1) BS02 ADP ? GO:0000502 ... P17980 35477760
    8487 7w39:C (3.2) BS02 ADP ? GO:0000502 ... P62195 35477760
    8488 7w39:F (3.2) BS02 ADP ? GO:0000502 ... P17980 35477760
    8489 7w3a:A (3.5) BS01 ADP ? GO:0000502 ... P35998 35477760
    8490 7w3a:B (3.5) BS01 ADP ? GO:0000502 ... P62191 35477760
    8491 7w3b:F (3.6) BS03 ADP ? GO:0000502 ... P17980 35477760
    8492 7w3c:E (3.4) BS02 ADP ? GO:0000502 ... A0A087X2I1 35477760
    8493 7w3c:F (3.4) BS01 ADP ? GO:0000502 ... P17980 35477760
    8494 7w3f:E (3.3) BS01 ADP ? GO:0000502 ... A0A087X2I1 35477760
    8495 7w3g:D (3.2) BS01 ADP ? GO:0000502 ... P43686 35477760
    8496 7w3h:D (3.2) BS01 ADP ? GO:0000502 ... P43686 35477760
    8497 7w3i:B (3.5) BS02 ADP ? GO:0000502 ... P62191 35477760
    8498 7w3i:C (3.5) BS01 ADP ? GO:0000502 ... P62195 35477760
    8499 7w3j:B (3.5) BS02 ADP ? GO:0000502 ... P62191 35477760
    8500 7w3j:C (3.5) BS01 ADP ? GO:0000502 ... P62195 35477760
    8501 7w3k:A (3.6) BS01 ADP ? GO:0000502 ... P35998 35477760
    8502 7w3k:B (3.6) BS01 ADP ? GO:0000502 ... P62191 35477760
    8503 7w3m:F (3.5) BS01 ADP ? GO:0000502 ... P17980 35477760
    8504 7w46:B (2.7) BS01 ADP 3.-.-.- GO:0005524 ... O34703 36191235
    8505 7w4c:w (2.7) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8506 7w4d:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8507 7w4e:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8508 7w4f:w (2.7) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8509 7w4g:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8510 7w4j:w (3.2) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8511 7w4k:w (3.2) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8512 7w4l:w (3.1) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8513 7w4m:w (3.3) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8514 7w4n:w (3.0) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8515 7w4o:B (2.96) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8516 7w4o:D (2.96) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8517 7w4o:F (2.96) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8518 7w4o:H (2.96) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8519 7w4p:A (3.19) BS01 ADP ? GO:0001508 ... Q61743 35589716
    8520 7w4p:B (3.19) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8521 7w4p:C (3.19) BS01 ADP ? GO:0001508 ... Q61743 35589716
    8522 7w4p:D (3.19) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8523 7w4p:E (3.19) BS01 ADP ? GO:0001508 ... Q61743 35589716
    8524 7w4p:F (3.19) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8525 7w4p:G (3.19) BS01 ADP ? GO:0001508 ... Q61743 35589716
    8526 7w4p:H (3.19) BS01 ADP ? GO:0001508 ... A0A1U7R319 35589716
    8527 7w4q:w (3.3) BS01 ADP ? GO:0005737 ... F1SIS9 35145322
    8528 7w50:A (1.15) BS01 ADP 3.6.4.- GO:0001725 ... P68139 36252034
    8529 7w51:A (1.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 36252034
    8530 7w8g:3 (2.52) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 35296675
    8531 7w8g:5 (2.52) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 35296675
    8532 7w8g:C (2.52) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 35296675
    8533 7w8g:E (2.52) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 35296675
    8534 7wak:A (2.782) BS01 ADP 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    8535 7wbt:A (2.75) BS01 ADP ? GO:0005524 ... Q288C4 35090055
    8536 7wbt:B (2.75) BS01 ADP ? GO:0005524 ... Q288C4 35090055
    8537 7wbu:A (3.42) BS01 ADP ? GO:0005524 ... Q288C4 35090055
    8538 7whg:A (3.25) BS01 ADP 3.6.4.- GO:0000287 ... P68135 N/A
    8539 7whg:B (3.25) BS01 ADP 3.6.4.- GO:0000287 ... P68135 N/A
    8540 7wix:A (3.53) BS01 ADP 7.2.2.- GO:0005524 ... P9WQJ9 36882106
    8541 7wix:B (3.53) BS01 ADP 7.2.2.- GO:0005524 ... P9WQJ7 36882106
    8542 7wrg:A (3.16) BS01 ADP ? GO:0003723 ... G5EFQ4 35879313
    8543 7wrg:B (3.16) BS01 ADP ? GO:0003723 ... G5EFQ4 35879313
    8544 7wrx:A (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8545 7wrx:B (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8546 7wrx:C (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8547 7wrx:D (3.40004) BS02 ADP ? GO:0000166 ... Q9RW32 36829173
    8548 7wrx:E (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8549 7wrx:F (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8550 7wrx:G (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8551 7wrx:H (3.40004) BS02 ADP ? GO:0000166 ... Q9RW32 36829173
    8552 7wrx:I (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8553 7wrx:J (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8554 7wrx:K (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8555 7wrx:L (3.40004) BS01 ADP ? GO:0000166 ... Q9RW32 36829173
    8556 7wu7:F (3.85) BS01 ADP ? GO:0003723 ... P40227 36493755
    8557 7wu7:H (3.85) BS01 ADP ? GO:0002199 ... P50990 36493755
    8558 7wu7:N (3.85) BS01 ADP ? GO:0003723 ... P40227 36493755
    8559 7wu7:P (3.85) BS01 ADP ? GO:0002199 ... P50990 36493755
    8560 7wub:A (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8561 7wub:B (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8562 7wub:C (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    8563 7wub:D (3.0) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 N/A
    8564 7wub:E (3.0) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8565 7wub:F (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8566 7wub:G (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8567 7wub:H (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8568 7wub:I (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8569 7wub:J (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8570 7wub:K (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8571 7wub:L (3.0) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 N/A
    8572 7wz3:G (4.1) BS01 ADP ? GO:0002199 ... P49368 37193829
    8573 7wz3:Q (4.1) BS01 ADP ? GO:0002199 ... P50990 37193829
    8574 7wz3:Z (4.1) BS01 ADP ? GO:0003723 ... P40227 37193829
    8575 7wz3:g (4.1) BS01 ADP ? GO:0002199 ... P49368 37193829
    8576 7wz3:q (4.1) BS01 ADP ? GO:0002199 ... P50990 37193829
    8577 7wz3:z (4.1) BS01 ADP ? GO:0003723 ... P40227 37193829
    8578 7x0s:A (3.1) BS01 ADP ? GO:0000242 ... P17987 37193829
    8579 7x0s:B (3.1) BS01 ADP ? GO:0002199 ... P78371 37193829
    8580 7x0s:E (3.1) BS01 ADP ? GO:0003730 ... P48643 37193829
    8581 7x0s:G (3.1) BS01 ADP ? GO:0002199 ... P49368 37193829
    8582 7x0s:H (3.1) BS01 ADP ? GO:0005515 ... Q99832 37193829
    8583 7x0s:I (3.1) BS01 ADP ? GO:0002199 ... P50991 37193829
    8584 7x0s:J (3.1) BS01 ADP ? GO:0002199 ... P50990 37193829
    8585 7x0s:K (3.1) BS01 ADP ? GO:0003723 ... P40227 37193829
    8586 7x0s:L (3.1) BS01 ADP ? GO:0002199 ... P78371 37193829
    8587 7x0s:M (3.1) BS01 ADP ? GO:0002199 ... P50991 37193829
    8588 7x0s:N (3.1) BS01 ADP ? GO:0002199 ... P49368 37193829
    8589 7x0s:O (3.1) BS02 ADP ? GO:0005515 ... Q99832 37193829
    8590 7x0s:P (3.1) BS01 ADP ? GO:0002199 ... P50990 37193829
    8591 7x0s:a (3.1) BS01 ADP ? GO:0000242 ... P17987 37193829
    8592 7x0s:e (3.1) BS01 ADP ? GO:0003730 ... P48643 37193829
    8593 7x0s:z (3.1) BS01 ADP ? GO:0003723 ... P40227 37193829
    8594 7x0v:A (3.2) BS01 ADP ? GO:0000242 ... P17987 37193829
    8595 7x0v:B (3.2) BS01 ADP ? GO:0002199 ... P78371 37193829
    8596 7x0v:E (3.2) BS01 ADP ? GO:0003730 ... P48643 37193829
    8597 7x0v:G (3.2) BS01 ADP ? GO:0002199 ... P49368 37193829
    8598 7x0v:H (3.2) BS01 ADP ? GO:0005515 ... Q99832 37193829
    8599 7x0v:I (3.2) BS01 ADP ? GO:0002199 ... P50991 37193829
    8600 7x0v:J (3.2) BS01 ADP ? GO:0002199 ... P50990 37193829

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218