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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 7nvl:b (2.5) BS01 ADP ? GO:0002199 ... P78371 35449234
    7402 7nvl:d (2.5) BS01 ADP ? GO:0002199 ... P50991 35449234
    7403 7nvl:e (2.5) BS01 ADP ? GO:0003730 ... P48643 35449234
    7404 7nvl:g (2.5) BS01 ADP ? GO:0002199 ... P49368 35449234
    7405 7nvl:h (2.5) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7406 7nvl:q (2.5) BS01 ADP ? GO:0002199 ... P50990 35449234
    7407 7nvl:z (2.5) BS01 ADP ? GO:0003723 ... P40227 35449234
    7408 7nvm:A (3.1) BS01 ADP ? GO:0000242 ... P17987 35449234
    7409 7nvm:B (3.1) BS01 ADP ? GO:0002199 ... P78371 35449234
    7410 7nvm:D (3.1) BS01 ADP ? GO:0002199 ... P50991 35449234
    7411 7nvm:E (3.1) BS01 ADP ? GO:0003730 ... P48643 35449234
    7412 7nvm:G (3.1) BS01 ADP ? GO:0002199 ... P49368 35449234
    7413 7nvm:H (3.1) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7414 7nvm:Q (3.1) BS01 ADP ? GO:0002199 ... P50990 35449234
    7415 7nvm:Z (3.1) BS01 ADP ? GO:0003723 ... P40227 35449234
    7416 7nvm:a (3.1) BS01 ADP ? GO:0000242 ... P17987 35449234
    7417 7nvm:b (3.1) BS01 ADP ? GO:0002199 ... P78371 35449234
    7418 7nvm:d (3.1) BS01 ADP ? GO:0002199 ... P50991 35449234
    7419 7nvm:e (3.1) BS01 ADP ? GO:0003730 ... P48643 35449234
    7420 7nvm:g (3.1) BS01 ADP ? GO:0002199 ... P49368 35449234
    7421 7nvm:h (3.1) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7422 7nvm:q (3.1) BS01 ADP ? GO:0002199 ... P50990 35449234
    7423 7nvm:z (3.1) BS01 ADP ? GO:0003723 ... P40227 35449234
    7424 7nvn:A (3.0) BS01 ADP ? GO:0000242 ... P17987 35449234
    7425 7nvn:B (3.0) BS01 ADP ? GO:0002199 ... P78371 35449234
    7426 7nvn:D (3.0) BS01 ADP ? GO:0002199 ... P50991 35449234
    7427 7nvn:E (3.0) BS01 ADP ? GO:0003730 ... P48643 35449234
    7428 7nvn:G (3.0) BS01 ADP ? GO:0002199 ... P49368 35449234
    7429 7nvn:H (3.0) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7430 7nvn:Q (3.0) BS01 ADP ? GO:0002199 ... P50990 35449234
    7431 7nvn:Z (3.0) BS01 ADP ? GO:0003723 ... P40227 35449234
    7432 7nvn:a (3.0) BS01 ADP ? GO:0000242 ... P17987 35449234
    7433 7nvn:b (3.0) BS01 ADP ? GO:0002199 ... P78371 35449234
    7434 7nvn:d (3.0) BS01 ADP ? GO:0002199 ... P50991 35449234
    7435 7nvn:e (3.0) BS01 ADP ? GO:0003730 ... P48643 35449234
    7436 7nvn:g (3.0) BS01 ADP ? GO:0002199 ... P49368 35449234
    7437 7nvn:h (3.0) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7438 7nvn:q (3.0) BS01 ADP ? GO:0002199 ... P50990 35449234
    7439 7nvn:z (3.0) BS01 ADP ? GO:0003723 ... P40227 35449234
    7440 7nvo:A (3.5) BS01 ADP ? GO:0000242 ... P17987 35449234
    7441 7nvo:B (3.5) BS01 ADP ? GO:0002199 ... P78371 35449234
    7442 7nvo:D (3.5) BS01 ADP ? GO:0002199 ... P50991 35449234
    7443 7nvo:E (3.5) BS01 ADP ? GO:0003730 ... P48643 35449234
    7444 7nvo:G (3.5) BS01 ADP ? GO:0002199 ... P49368 35449234
    7445 7nvo:H (3.5) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7446 7nvo:Q (3.5) BS01 ADP ? GO:0002199 ... P50990 35449234
    7447 7nvo:Z (3.5) BS01 ADP ? GO:0003723 ... P40227 35449234
    7448 7nvo:a (3.5) BS01 ADP ? GO:0000242 ... P17987 35449234
    7449 7nvo:b (3.5) BS01 ADP ? GO:0002199 ... P78371 35449234
    7450 7nvo:d (3.5) BS01 ADP ? GO:0002199 ... P50991 35449234
    7451 7nvo:e (3.5) BS01 ADP ? GO:0003730 ... P48643 35449234
    7452 7nvo:g (3.5) BS01 ADP ? GO:0002199 ... P49368 35449234
    7453 7nvo:h (3.5) BS01 ADP ? GO:0005515 ... Q99832 35449234
    7454 7nvo:q (3.5) BS01 ADP ? GO:0002199 ... P50990 35449234
    7455 7nvo:z (3.5) BS01 ADP ? GO:0003723 ... P40227 35449234
    7456 7nvv:7 (2.9) BS05 ADP 5.6.2.4 GO:0000112 ... P19447 33902107
    7457 7nvx:7 (3.9) BS06 ADP 5.6.2.4 GO:0000112 ... P19447 33902107
    7458 7nw0:7 (6.6) BS05 ADP 5.6.2.4 GO:0000112 ... P19447 33902107
    7459 7nxf:A (3.1) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7460 7nxu:A (2.1) BS02 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... P14336 35987382
    7461 7ny1:A (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7462 7ny1:B (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7463 7ny1:C (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7464 7ny1:D (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7465 7ny1:E (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7466 7ny1:F (3.26) BS01 ADP 7.1.2.1 GO:0000166 ... P07038 34757782
    7467 7o4i:7 (3.2) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7468 7o4j:7 (2.9) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7469 7o4k:7 (3.6) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7470 7o4l:7 (3.4) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7471 7o4x:A (1.65) BS01 ADP ? GO:0000166 ... A0A6P1EFQ2 35285159
    7472 7o72:7 (3.4) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7473 7o73:7 (3.4) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7474 7o75:7 (3.2) BS04 ADP 5.6.2.4 GO:0000019 ... Q00578 34133942
    7475 7oar:A (2.58) BS02 ADP ? GO:0000723 ... K7RJ88 35736675
    7476 7oar:B (2.58) BS02 ADP ? GO:0000723 ... K7RJ88 35736675
    7477 7oh5:A (2.9) BS03 ADP 7.6.2.1 GO:0000166 ... P39524 34023399
    7478 7oim:A (4.0) BS04 ADP 2.3.2.-
    2.3.2.27
    3.6.4.-
    GO:0001525 ... E9Q555 N/A
    7479 7ole:B (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 34233195
    7480 7ole:C (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 34233195
    7481 7ole:D (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 34233195
    7482 7ole:E (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 34233195
    7483 7ole:F (3.41) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 34233195
    7484 7oob:b (2.7) BS03 ADP 3.6.4.- GO:0000012 ... Q03468 34526721
    7485 7otj:A (2.58) BS02 ADP 3.6.4.12 GO:0000723 ... Q59RQ0 34166917
    7486 7otj:B (2.58) BS02 ADP 3.6.4.12 GO:0000723 ... Q59RQ0 34166917
    7487 7ou0:A (3.8) BS01 ADP ? GO:0000018 ... P23909 35013597
    7488 7ou0:B (3.8) BS02 ADP ? GO:0000018 ... P23909 35013597
    7489 7ou0:B (3.8) BS03 ADP ? GO:0000018 ... P23909 35013597
    7490 7ou2:A (4.8) BS01 ADP ? GO:0000018 ... P23909 35013597
    7491 7ou2:B (4.8) BS01 ADP ? GO:0000018 ... P23909 35013597
    7492 7ou4:A (3.3) BS02 ADP ? GO:0000018 ... P23909 35013597
    7493 7ou4:B (3.3) BS02 ADP ? GO:0000018 ... P23909 35013597
    7494 7oxo:A (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7495 7oxo:B (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7496 7oxo:C (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7497 7oxo:D (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7498 7oxo:E (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7499 7oxo:F (3.9) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 35870450
    7500 7oy3:A (1.78) BS04 ADP 3.4.-.- GO:0005524 ... A0LU48 34789727
    7501 7oyf:A (1.88) BS05 ADP 3.4.-.- GO:0005524 ... A0LU48 34789727
    7502 7oyh:A (1.75) BS04 ADP 3.4.-.- GO:0005524 ... A0LU48 34789727
    7503 7p04:A (2.85) BS02 ADP ? GO:0005515 ... P33302 34489436
    7504 7p05:A (3.13) BS02 ADP ? GO:0005515 ... P33302 34489436
    7505 7p09:D (2.7) BS03 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7506 7p09:E (2.7) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7507 7p0b:A (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7508 7p0b:B (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7509 7p0b:C (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7510 7p0b:D (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7511 7p0b:E (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7512 7p0b:F (4.11) BS01 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7513 7p0m:D (2.75) BS03 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7514 7p0m:E (2.75) BS02 ADP 3.4.21.53 GO:0000002 ... P36776 N/A
    7515 7p1g:A (3.2) BS03 ADP 3.6.4.- GO:0000287 ... P68135 34785651
    7516 7p1g:B (3.2) BS03 ADP 3.6.4.- GO:0000287 ... P68135 34785651
    7517 7p1g:C (3.2) BS03 ADP 3.6.4.- GO:0000287 ... P68135 34785651
    7518 7p1g:D (3.2) BS03 ADP 3.6.4.- GO:0000287 ... P68135 34785651
    7519 7p1g:E (3.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 34785651
    7520 7p2y:A (3.1) BS02 ADP 7.1.2.2 GO:0005524 ... A3M142 35171679
    7521 7p2y:D (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A3M144 35171679
    7522 7p30:2 (3.0) BS05 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    7523 7p30:3 (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7524 7p30:3 (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7525 7p30:4 (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    7526 7p30:5 (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7527 7p30:5 (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7528 7p30:7 (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7529 7p30:7 (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7530 7p30:A (3.0) BS05 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    7531 7p30:B (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7532 7p30:B (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7533 7p30:C (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    7534 7p30:D (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7535 7p30:D (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7536 7p30:F (3.0) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7537 7p30:F (3.0) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7538 7p3n:E (4.6) BS01 ADP 7.1.2.2 GO:0005524 ... A3M144 35171679
    7539 7p3w:F (4.3) BS01 ADP 7.1.2.2 GO:0005524 ... A3M144 35171679
    7540 7p5z:2 (3.3) BS05 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    7541 7p5z:3 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7542 7p5z:3 (3.3) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7543 7p5z:4 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    7544 7p5z:5 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7545 7p5z:5 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7546 7p5z:7 (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7547 7p5z:7 (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7548 7p5z:A (3.3) BS04 ADP 3.6.4.12 GO:0000727 ... P29469 34963704
    7549 7p5z:B (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7550 7p5z:B (3.3) BS03 ADP 3.6.4.12 GO:0000727 ... P24279 34963704
    7551 7p5z:C (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 34963704
    7552 7p5z:D (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7553 7p5z:D (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 34963704
    7554 7p5z:F (3.3) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7555 7p5z:F (3.3) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 34963704
    7556 7p6x:A (4.1) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 34951455
    7557 7p6x:B (4.1) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 34951455
    7558 7p6x:C (4.1) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 34951455
    7559 7p7w:AAA (1.57) BS01 ADP 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    7560 7p7w:BBB (1.57) BS01 ADP 2.7.1.59 GO:0000794 ... Q12306
    R8APY9
    N/A
    7561 7pbj:Ad (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7562 7pbj:Ae (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7563 7pbj:Ak (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7564 7pbj:Al (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7565 7pbj:Ar (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7566 7pbj:As (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7567 7pbj:Ay (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7568 7pbj:Az (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7569 7pbj:Bf (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7570 7pbj:Bg (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7571 7pbj:Bm (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7572 7pbj:Bn (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7573 7pbj:Bt (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7574 7pbj:Bu (3.4) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893
    7575 7pbl:D (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7576 7pbl:E (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7577 7pbl:F (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7578 7pbm:D (3.2) BS02 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7579 7pbm:E (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7580 7pbm:F (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7581 7pbn:A (3.2) BS02 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7582 7pbn:D (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7583 7pbn:E (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7584 7pbn:F (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7585 7pbo:A (2.9) BS02 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7586 7pbo:D (2.9) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7587 7pbo:E (2.9) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7588 7pbo:F (2.9) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7589 7pbp:A (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7590 7pbp:E (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7591 7pbp:F (3.2) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7592 7pbq:E (3.1) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7593 7pbq:F (3.1) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7594 7pbr:E (3.0) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7595 7pbr:F (3.0) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7596 7pbs:E (3.3) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7597 7pbt:D (3.3) BS02 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7598 7pbt:E (3.3) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7599 7pbt:F (3.3) BS01 ADP 3.6.4.12 GO:0000400 ... Q5M2B1 36002576
    7600 7pbx:Ac (3.43) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 34521893

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218