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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6601 6xk2:A (2.5) BS01 ADP 2.7.1.15 GO:0004747 ... J9VQ51 N/A
    6602 6xk2:B (2.5) BS01 ADP 2.7.1.15 GO:0004747 ... J9VQ51 N/A
    6603 6xk2:C (2.5) BS01 ADP 2.7.1.15 GO:0004747 ... J9VQ51 N/A
    6604 6xk2:D (2.5) BS01 ADP 2.7.1.15 GO:0004747 ... J9VQ51 N/A
    6605 6xlh:B (2.83) BS01 ADP ? GO:0000492 ... P15108 N/A
    6606 6xn8:A (1.95) BS03 ADP ? GO:0000166 ... A0A1H8YFL8 N/A
    6607 6xn8:B (1.95) BS04 ADP ? GO:0000166 ... A0A1H8YFL8 N/A
    6608 6xp7:A (2.2) BS01 ADP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    6609 6xp7:B (2.2) BS01 ADP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    6610 6xp7:C (2.2) BS01 ADP 2.7.4.6 GO:0004550 ... Q7Z8P9 33089641
    6611 6xtx:2 (3.29) BS03 ADP 3.6.4.12 GO:0000727 ... P49736 32453425
    6612 6xtx:3 (3.29) BS02 ADP 3.6.4.12 GO:0000727 ... P25205 32453425
    6613 6xtx:6 (3.29) BS01 ADP 3.6.4.12 GO:0000727 ... Q14566 32453425
    6614 6y1i:A (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    6615 6y1i:B (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    6616 6y1i:C (3.0) BS01 ADP ? GO:0003777 ... P52732 N/A
    6617 6ya7:A (1.67) BS04 ADP 2.7.11.1 GO:0004672 ... O00311 32521228
    6618 6ya8:A (1.79) BS01 ADP 2.7.11.1 GO:0004672 ... O00311 32521228
    6619 6yc7:E (1.8) BS03 ADP ? GO:0000166 ... H7C694 33645536
    6620 6yc7:F (1.8) BS01 ADP ? GO:0000166 ... H7C694 33645536
    6621 6ycx:A (3.99) BS01 ADP ? GO:0000146 ... Q8IDR3 33046215
    6622 6ycx:B (3.99) BS01 ADP ? GO:0000146 ... Q8IDR3 33046215
    6623 6ycy:A (2.55) BS02 ADP ? GO:0000146 ... Q8IDR3 33046215
    6624 6ycz:A (3.27) BS02 ADP ? GO:0000146 ... Q8IDR3 33046215
    6625 6yhr:A (2.2) BS01 ADP 3.1.-.-
    5.6.2.4
    GO:0003676 ... Q14191 33199508
    6626 6yny:A1 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6627 6yny:A2 (2.7) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6628 6yny:D1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6629 6yny:D2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6630 6yny:E1 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6631 6yny:E2 (2.7) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6632 6ynz:A1 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6633 6ynz:A2 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6634 6ynz:A4 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6635 6ynz:A5 (3.1) BS01 ADP ? GO:0005524 ... Q24HY8 33093501
    6636 6ynz:D1 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6637 6ynz:D2 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6638 6ynz:D4 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6639 6ynz:D5 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6640 6ynz:E1 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6641 6ynz:E2 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6642 6ynz:E4 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6643 6ynz:E5 (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6644 6yo0:D1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6645 6yo0:E1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    6646 6ypn:B (1.58) BS01 ADP 2.7.11.1 GO:0004672 ... P68400 33119282
    6647 6ypn:B (1.58) BS02 ADP 2.7.11.1 GO:0004672 ... P68400 33119282
    6648 6ysy:A (3.246) BS01 ADP ? GO:0000146 ... Q28641 33035452
    6649 6yuf:A (3.94) BS03 ADP ? GO:0000779 ... O94383 32755595
    6650 6yuf:A (3.94) BS04 ADP ? GO:0000779 ... O94383 32755595
    6651 6yuf:C (3.94) BS02 ADP ? GO:0000779 ... O42649 32755595
    6652 6yuf:C (3.94) BS04 ADP ? GO:0000779 ... O42649 32755595
    6653 6yxt:A (2.2) BS03 ADP 2.7.1.32 N/A Q8IM71 N/A
    6654 6yy0:B (3.23) BS02 ADP ? GO:0005515 ... P19483 32900941
    6655 6yy0:D (3.23) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6656 6yy0:E (3.23) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6657 6yy0:F (3.23) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6658 6yzh:A (1.19) BS03 ADP 2.7.11.1 GO:0004672 ... P68400 35343996
    6659 6z0p:A (1.85) BS01 ADP ? GO:0045226 ... Q0GYW2 34439861
    6660 6z0p:B (1.85) BS01 ADP ? GO:0045226 ... Q0GYW2 34439861
    6661 6z19:B (1.47) BS02 ADP 2.7.11.1 GO:0004672 ... P68400 35343996
    6662 6z1d:B (2.705) BS01 ADP ? GO:0005524 ... P58555 32979320
    6663 6z1e:B (2.454) BS01 ADP ? GO:0005524 ... P58555 32979320
    6664 6z1f:1 (2.86) BS01 ADP ? GO:0005524 ... P58555 32979320
    6665 6z1r:D (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6666 6z1r:E (3.29) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6667 6z1r:F (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6668 6z1u:D (3.47) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6669 6z1u:E (3.47) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6670 6z1u:F (3.47) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6671 6z47:A (6.3) BS01 ADP ? GO:0000146 ... G1N5L2 33268888
    6672 6z47:B (6.3) BS02 ADP ? GO:0000146 ... G1N5L2 33268888
    6673 6z4w:A (1.36) BS01 ADP ? GO:0005524 ... Q8DQH4 32873757
    6674 6z63:A (1.57) BS01 ADP ? GO:0005524 ... Q8DQH4 32873757
    6675 6z63:A (1.57) BS02 ADP ? GO:0005524 ... Q8DQH4 32873757
    6676 6z63:A (1.57) BS03 ADP ? GO:0005524 ... Q8DQH4 32873757
    6677 6z63:B (1.57) BS01 ADP ? GO:0005524 ... Q8DQH4 32873757
    6678 6z63:C (1.57) BS01 ADP ? GO:0005524 ... Q8DQH4 32873757
    6679 6z63:C (1.57) BS02 ADP ? GO:0005524 ... Q8DQH4 32873757
    6680 6z67:C (2.4) BS01 ADP ? GO:0005524 ... Q8DQH4 32873757
    6681 6z7u:A (2.58) BS01 ADP ? GO:0003774 ... P08799 33049993
    6682 6z9p:b (3.9) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6683 6z9p:c (3.9) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6684 6z9p:d (3.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6685 6z9p:e (3.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6686 6z9p:f (3.9) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6687 6z9q:a (5.7) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6688 6z9q:b (5.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6689 6z9q:b (5.7) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6690 6z9q:c (5.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6691 6z9q:c (5.7) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6692 6z9q:d (5.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6693 6z9q:e (5.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6694 6z9q:f (5.7) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6695 6z9r:a (4.1) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6696 6z9r:a (4.1) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6697 6z9r:b (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6698 6z9r:c (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6699 6z9r:d (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6700 6z9r:e (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6701 6z9s:a (4.4) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6702 6z9s:a (4.4) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6703 6z9s:b (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6704 6z9s:b (4.4) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6705 6z9s:c (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6706 6z9s:c (4.4) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6707 6z9s:d (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6708 6z9s:d (4.4) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6709 6z9s:e (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6710 6z9t:a (4.1) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6711 6z9t:a (4.1) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6712 6z9t:b (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6713 6z9t:b (4.1) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6714 6z9t:c (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6715 6z9t:c (4.1) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6716 6z9t:d (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6717 6z9t:d (4.1) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6718 6z9t:e (4.1) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6719 6zce:k (5.3) BS02 ADP ? GO:0000054 ... Q03195 33289941
    6720 6zm2:A (2.1) BS03 ADP 3.6.4.13 GO:0003676 ... G0SEG4 33825710
    6721 6zme:CI (3.0) BS05 ADP 3.6.5.- GO:0000054 ... P61221 32680882
    6722 6znl:A (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6723 6znl:B (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6724 6znl:C (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6725 6znl:D (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6726 6znl:E (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6727 6znl:F (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6728 6znl:G (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6729 6znl:I (3.8) BS01 ADP ? N/A F2Z5G5 33734450
    6730 6znl:J (3.8) BS01 ADP ? GO:0005737 ... I3LHK5 33734450
    6731 6znm:G (4.1) BS01 ADP ? N/A F2Z5G5 33734450
    6732 6znm:I (4.1) BS01 ADP ? N/A F2Z5G5 33734450
    6733 6znm:J (4.1) BS01 ADP ? GO:0005737 ... I3LHK5 33734450
    6734 6znn:G (4.5) BS01 ADP ? N/A F2Z5G5 33734450
    6735 6znn:I (4.5) BS01 ADP ? N/A F2Z5G5 33734450
    6736 6znn:J (4.5) BS01 ADP ? GO:0005737 ... I3LHK5 33734450
    6737 6zno:G (6.8) BS01 ADP ? N/A F2Z5G5 33734450
    6738 6zno:I (6.8) BS01 ADP ? N/A F2Z5G5 33734450
    6739 6zno:J (6.8) BS01 ADP ? GO:0005737 ... I3LHK5 33734450
    6740 6znx:A (2.4) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    6741 6znx:B (2.4) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    6742 6znx:C (2.4) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    6743 6znx:D (2.4) BS01 ADP 2.7.1.15 GO:0004747 ... A0A0B0SD75 N/A
    6744 6zo4:G (8.2) BS01 ADP ? N/A F2Z5G5 33734450
    6745 6zo4:I (8.2) BS01 ADP ? N/A F2Z5G5 33734450
    6746 6zo4:J (8.2) BS01 ADP ? GO:0005737 ... I3LHK5 33734450
    6747 6zph:B (6.9) BS01 ADP ? GO:0003777 ... Q9NS87 33252036
    6748 6zpo:D (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6749 6zpo:E (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6750 6zpo:F (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6751 6zqm:D (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6752 6zqm:E (3.29) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6753 6zqm:F (3.29) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6754 6zqn:D (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6755 6zqn:E (4.0) BS02 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6756 6zqn:F (4.0) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 32900941
    6757 6zu9:k (6.2) BS02 ADP ? GO:0000054 ... Q03195 33289941
    6758 6zv6:h (2.9) BS02 ADP 2.7.11.1
    3.6.3.-
    GO:0004674 ... Q9BRS2 33908345
    6759 6zvj:1 (3.8) BS04 ADP 3.6.5.- GO:0000054 ... P61221 33289941
    6760 6zy4:F (4.1) BS01 ADP N/A GO:0005524 ... N/A 33199922
    6761 6zy4:G (4.1) BS01 ADP N/A GO:0005524 ... N/A 33199922
    6762 6zyh:A (1.88) BS01 ADP 3.6.4.10 GO:0005524 ... G3I8R9 33295873
    6763 6zyh:B (1.88) BS01 ADP 3.6.4.10 GO:0005524 ... G3I8R9 33295873
    6764 6zyi:A (1.52) BS01 ADP ? GO:0005524 ... P0DMV8 33295873
    6765 6zyj:A (1.85) BS02 ADP 3.6.4.10 GO:0005524 ... P11142 33295873
    6766 6zyj:B (1.85) BS01 ADP 3.6.4.10 GO:0005524 ... P11142 33295873
    6767 6zyw:C (8.78) BS01 ADP ? GO:0005524 ... Q22A67 33632841
    6768 6zyw:C (8.78) BS03 ADP ? GO:0005524 ... Q22A67 33632841
    6769 6zyw:C (8.78) BS04 ADP ? GO:0005524 ... Q22A67 33632841
    6770 6zyy:C (4.4) BS01 ADP ? GO:0005524 ... Q22A67 33632841
    6771 6zyy:C (4.4) BS03 ADP ? GO:0005524 ... Q22A67 33632841
    6772 6zyy:C (4.4) BS04 ADP ? GO:0005524 ... Q22A67 33632841
    6773 7a09:J (3.5) BS04 ADP 3.6.5.- GO:0000054 ... P61221 33289941
    6774 7a1g:x (3.0) BS04 ADP ? GO:0000054 ... Q03195 33289941
    6775 7a3z:A (2.095) BS01 ADP ? GO:0003777 ... P46873 33513284
    6776 7a4v:A (1.94) BS01 ADP 3.6.4.10 GO:0005524 ... G3I8R9 33295873
    6777 7a8r:A (2.31) BS02 ADP 5.6.2.4 GO:0003676 ... A0JN36 34496242
    6778 7a8r:B (2.31) BS02 ADP 5.6.2.4 GO:0003676 ... A0JN36 34496242
    6779 7abr:A (3.7) BS02 ADP ? GO:0005515 ... P37571 35662409
    6780 7abr:A (3.7) BS03 ADP ? GO:0005515 ... P37571 35662409
    6781 7abr:B (3.7) BS03 ADP ? GO:0005515 ... P37571 35662409
    6782 7abr:F (3.7) BS01 ADP ? GO:0005515 ... P37571 35662409
    6783 7ad9:B (3.5) BS05 ADP 3.6.4.- GO:0000287 ... P68135 33216759
    6784 7ad9:D (3.5) BS05 ADP 3.6.4.- GO:0000287 ... P68135 33216759
    6785 7ad9:F (3.5) BS04 ADP 3.6.4.- GO:0000287 ... P68135 33216759
    6786 7ad9:H (3.5) BS05 ADP 3.6.4.- GO:0000287 ... P68135 33216759
    6787 7ad9:I (3.5) BS03 ADP 3.6.4.- GO:0000287 ... P68135 33216759
    6788 7adb:b (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6789 7adb:c (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6790 7adb:d (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6791 7adb:e (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6792 7adb:f (4.4) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6793 7adc:a (4.0) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6794 7adc:a (4.0) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6795 7adc:b (4.0) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6796 7adc:b (4.0) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6797 7adc:c (4.0) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6798 7adc:c (4.0) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6799 7adc:d (4.0) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850
    6800 7adc:e (4.0) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 33243850

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218