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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 6v11:C (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    6402 6v11:E (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    6403 6v11:F (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    6404 6v4c:A (1.97) BS01 ADP ? GO:0005524 ... A0A1S4K3K8 32518308 MOAD: Kd=32.68nM
    6405 6v4k:E (3.53004) BS01 ADP ? GO:0000166 ... Q87KD2 31992706
    6406 6v4k:F (3.53004) BS01 ADP ? GO:0000166 ... Q87KD2 31992706
    6407 6v4k:G (3.53004) BS01 ADP ? GO:0000166 ... Q87KD2 31992706
    6408 6v4k:H (3.53004) BS01 ADP ? GO:0000166 ... Q87KD2 31992706
    6409 6v6s:U (4.3) BS01 ADP N/A N/A N/A 31862189
    6410 6vao:A (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6411 6vao:B (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6412 6vao:C (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6413 6vao:D (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6414 6vao:E (3.4) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6415 6vau:A (3.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6416 6vau:B (3.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6417 6vau:C (3.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6418 6vau:D (3.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6419 6vau:E (3.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6420 6vec:A (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6421 6vec:B (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6422 6vec:C (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6423 6vec:D (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6424 6vec:E (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6425 6vec:F (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6426 6vec:G (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6427 6vec:H (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6428 6vec:I (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6429 6vec:J (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6430 6vec:K (3.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32509377
    6431 6vfs:A (3.3) BS01 ADP ? GO:0005524 ... Q9JYY3 31916936
    6432 6vfs:F (3.3) BS01 ADP ? GO:0005524 ... Q9JYY3 31916936
    6433 6vfx:F (2.9) BS01 ADP ? GO:0005524 ... Q9JYY3 31916936
    6434 6vmb:A (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6435 6vmb:B (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6436 6vmb:D (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6437 6vmb:F (5.23) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6438 6vmd:F (4.53) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6439 6vof:C (4.51) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6440 6vof:E (4.51) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6441 6vog:C (4.35) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6442 6vog:E (4.35) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6443 6voh:A (4.16) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6444 6voh:F (4.16) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6445 6voi:A (4.03) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6446 6voi:F (4.03) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6447 6voj:B (4.34) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6448 6voj:D (4.34) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6449 6voj:F (4.34) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6450 6vok:B (3.85) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6451 6vok:D (3.85) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6452 6vok:F (3.85) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6453 6vol:C (4.06) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6454 6vol:D (4.06) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6455 6vol:E (4.06) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6456 6vom:C (3.6) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6457 6vom:D (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6458 6vom:E (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6459 6von:A (3.35) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6460 6von:E (3.35) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6461 6von:F (3.35) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6462 6voo:A (3.05) BS02 ADP 7.1.2.2 GO:0005524 ... P06450 32879423
    6463 6voo:E (3.05) BS02 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6464 6voo:F (3.05) BS01 ADP 7.1.2.2 GO:0005524 ... P00825 32879423
    6465 6vq6:C (3.9) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6466 6vq7:B (4.0) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6467 6vq7:E (4.0) BS01 ADP ? GO:0000221 ... P62815 32165585
    6468 6vq8:A (3.9) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6469 6vq8:D (3.9) BS01 ADP ? GO:0000221 ... P62815 32165585
    6470 6vq9:C (3.6) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6471 6vqa:B (3.7) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6472 6vqa:E (3.7) BS01 ADP ? GO:0000221 ... P62815 32165585
    6473 6vqb:A (3.6) BS01 ADP 7.1.2.2 GO:0000221 ... D4A133 32165585
    6474 6vqb:D (3.6) BS01 ADP ? GO:0000221 ... P62815 32165585
    6475 6vqt:A (3.03) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    6476 6vqt:A (3.03) BS02 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    6477 6vqt:B (3.03) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    6478 6vqt:B (3.03) BS02 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    6479 6vrf:A (1.5) BS01 ADP 2.7.11.1 GO:0004672 ... Q6IQ55 32424773
    6480 6vrf:B (1.5) BS01 ADP 2.7.11.1 GO:0004672 ... Q6IQ55 32424773
    6481 6vsp:B (1.9) BS01 ADP 1.1.1.- GO:0016491 ... H9XP47 33292448
    6482 6vve:A (1.85) BS02 ADP ? N/A Q5ZSB6 32229585
    6483 6vvo:E (3.4) BS01 ADP ? GO:0000731 ... P40938 N/A
    6484 6vwo:A (1.78) BS01 ADP 2.7.1.73 GO:0005515 ... P0AEW6 32857952
    6485 6vz4:K (3.9) BS04 ADP 3.6.4.12 GO:0005524 ... P32597 33288924
    6486 6vzq:A (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6487 6vzq:B (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6488 6vzq:C (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6489 6vzq:D (3.08) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6490 6vzr:A (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6491 6vzr:B (2.6) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6492 6vzr:C (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6493 6vzr:D (2.6) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6494 6vzs:A (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6495 6vzs:B (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6496 6vzs:C (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6497 6vzs:D (2.66) BS01 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6498 6vzu:A (1.98) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6499 6vzu:B (1.98) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6500 6vzu:C (1.98) BS05 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6501 6vzu:D (1.98) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6502 6vzv:A (2.33) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6503 6vzv:B (2.33) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6504 6vzv:C (2.33) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6505 6vzv:D (2.33) BS03 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6506 6vzw:A (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6507 6vzw:B (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6508 6vzw:C (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6509 6vzw:D (2.5) BS02 ADP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    6510 6w17:I (3.9) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32839613
    6511 6w17:J (3.9) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32839613
    6512 6w17:K (3.9) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32839613
    6513 6w17:L (3.9) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32839613
    6514 6w1z:A (2.7) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6515 6w1z:E (2.7) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6516 6w1z:F (2.7) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6517 6w1z:F (2.7) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6518 6w20:A (3.0) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6519 6w20:A (3.0) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6520 6w20:F (3.0) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6521 6w21:A (3.3) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6522 6w21:A (3.3) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6523 6w21:B (3.3) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6524 6w21:F (3.3) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6525 6w21:F (3.3) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6526 6w22:A (3.0) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6527 6w22:E (3.0) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6528 6w22:F (3.0) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6529 6w22:F (3.0) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6530 6w23:A (3.1) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6531 6w23:A (3.1) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6532 6w23:F (3.1) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6533 6w24:A (3.4) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6534 6w24:A (3.4) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6535 6w24:B (3.4) BS03 ADP ? GO:0004176 ... P0ABH9 32313240
    6536 6w24:F (3.4) BS01 ADP ? GO:0004176 ... P0ABH9 32313240
    6537 6w24:F (3.4) BS02 ADP ? GO:0004176 ... P0ABH9 32313240
    6538 6w6e:E (3.7) BS03 ADP ? GO:0005524 ... P9WPD1 34038719
    6539 6w6e:F (3.7) BS02 ADP ? GO:0005524 ... P9WPD1 34038719
    6540 6w6g:E (3.1) BS03 ADP ? GO:0005524 ... P9WPD1 34038719
    6541 6w6g:F (3.1) BS02 ADP ? GO:0005524 ... P9WPD1 34038719
    6542 6w6h:E (3.3) BS02 ADP ? GO:0005524 ... P9WPD1 34038719
    6543 6w6h:E (3.3) BS03 ADP ? GO:0005524 ... P9WPD1 34038719
    6544 6w6i:E (3.5) BS03 ADP ? GO:0005524 ... P9WPD1 34038719
    6545 6w6i:F (3.5) BS02 ADP ? GO:0005524 ... P9WPD1 34038719
    6546 6w6j:E (3.2) BS03 ADP ? GO:0005524 ... P9WPD1 34038719
    6547 6w6j:F (3.2) BS02 ADP ? GO:0005524 ... P9WPD1 34038719
    6548 6wjd:C (4.8) BS01 ADP ? GO:0000502 ... P62195 32783951
    6549 6wjd:F (4.8) BS01 ADP ? GO:0000502 ... P17980 32783951
    6550 6wlz:C (2.9) BS01 ADP 7.1.2.2 GO:0000139 ... P38606 33065002
    6551 6wlz:F (2.9) BS01 ADP ? GO:0000221 ... P21281 33065002
    6552 6wm2:C (3.1) BS01 ADP 7.1.2.2 GO:0000139 ... P38606 33065002
    6553 6wm2:F (3.1) BS01 ADP ? GO:0000221 ... P21281 33065002
    6554 6wm3:B (3.4) BS01 ADP 7.1.2.2 GO:0000139 ... P38606 33065002
    6555 6wm3:E (3.4) BS01 ADP ? GO:0000221 ... P21281 33065002
    6556 6wm4:A (3.6) BS01 ADP 7.1.2.2 GO:0000139 ... P38606 33065002
    6557 6wnq:D (3.4) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6558 6wnq:E (3.4) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6559 6wnq:F (3.4) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6560 6wnr:C (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    6561 6wnr:D (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6562 6wnr:E (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6563 6wnr:F (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    6564 6wqh:D (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 34563541
    6565 6wqh:F (3.6) BS01 ADP 3.4.21.53 GO:0004176 ... A0A059VAZ3 34563541
    6566 6wrf:F (3.14) BS01 ADP ? GO:0005524 ... P0A6H1 33089779
    6567 6wvt:B (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6568 6wvt:D (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6569 6wvt:E (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6570 6wvt:F (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6571 6wvt:H (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6572 6wvt:I (3.56) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32915141
    6573 6wwf:K (3.3) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6574 6wwg:K (2.9) BS02 ADP ? GO:0003777 ... L0N7N1 34131133
    6575 6wwg:N (2.9) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6576 6wwj:K (3.4) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6577 6wwk:K (3.0) BS02 ADP ? GO:0003777 ... L0N7N1 34131133
    6578 6wwk:N (3.0) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6579 6wwm:K (2.8) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6580 6wwn:K (3.5) BS02 ADP ? GO:0003777 ... L0N7N1 34131133
    6581 6wwq:K (3.0) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6582 6wwr:K (2.7) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6583 6wwu:K (2.7) BS01 ADP ? GO:0003777 ... L0N7N1 34131133
    6584 6x2f:A (4.0) BS03 ADP 3.6.4.- GO:0000716 ... P30958 33480355
    6585 6x4w:A (3.8) BS03 ADP 3.6.4.- GO:0000716 ... P30958 33480355
    6586 6x4y:A (3.6) BS03 ADP 3.6.4.- GO:0000716 ... P30958 33480355
    6587 6x5z:A (4.24) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32730789
    6588 6x5z:B (4.24) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32730789
    6589 6x5z:C (4.24) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32730789
    6590 6xbw:C (3.37) BS02 ADP 7.1.2.2 GO:0000221 ... P31404 32764564
    6591 6xby:A (3.79) BS01 ADP 7.1.2.2 GO:0000221 ... P31404 32764564
    6592 6xew:B (2.0) BS01 ADP 1.1.1.- GO:0016491 ... H9XP47 33292448
    6593 6xez:A (3.5) BS06 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 32783916
    6594 6xez:E (3.5) BS04 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004386 ... P0DTD1 32783916
    6595 6xez:F (3.5) BS04 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004386 ... P0DTD1 32783916
    6596 6xg6:A (3.2) BS01 ADP ? GO:0003723 ... Q12931
    Q8G9G1
    32913054
    6597 6xg6:B (3.2) BS01 ADP ? GO:0003723 ... Q12931
    Q8G9G1
    32913054
    6598 6xgy:A (2.9) BS01 ADP N/A GO:0005524 ... N/A 32602838
    6599 6xhi:A (4.19) BS01 ADP ? GO:0005515 ... Q9V2T8 N/A
    6600 6xi8:A (3.64) BS01 ADP 2.7.11.23 GO:0004672 ... P06242 33827808

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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