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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 6sza:B (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6202 6sza:B (6.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6203 6sza:C (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6204 6sza:D (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6205 6sza:E (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6206 6sza:E (6.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6207 6sza:F (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6208 6szb:A (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6209 6szb:B (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6210 6szb:B (7.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6211 6szb:C (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6212 6szb:C (7.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6213 6szb:D (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6214 6szb:D (7.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6215 6szb:E (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6216 6szb:E (7.0) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6217 6szb:F (7.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    6218 6t1y:A (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6219 6t1y:B (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6220 6t1y:C (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6221 6t1y:D (3.3) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6222 6t1y:E (3.3) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6223 6t20:A (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6224 6t20:B (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6225 6t20:C (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6226 6t20:D (3.7) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6227 6t20:E (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6228 6t23:A (3.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6229 6t23:B (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6230 6t23:C (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6231 6t23:D (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6232 6t23:E (3.1) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6233 6t24:A (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6234 6t24:B (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6235 6t24:C (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6236 6t24:D (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6237 6t24:E (3.7) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6238 6t25:A (3.6) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6239 6t25:B (3.6) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6240 6t25:C (3.6) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6241 6t25:D (3.6) BS03 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6242 6t25:E (3.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32084355
    6243 6t85:A (1.1) BS01 ADP 1.3.99.33 GO:0010181 ... Q8CVD0 33649331
    6244 6t8b:D (3.65) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6245 6t8b:E (3.65) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6246 6t8b:F (3.65) BS03 ADP ? GO:0000166 ... Q9I0M3 32513722
    6247 6t8g:A (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6248 6t8g:B (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6249 6t8g:C (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6250 6t8g:D (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6251 6t8g:E (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6252 6t8g:F (4.34) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6253 6t8o:A (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6254 6t8o:B (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6255 6t8o:C (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6256 6t8o:D (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6257 6t8o:E (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6258 6t8o:F (3.99) BS01 ADP ? GO:0000166 ... Q9I0M3 32513722
    6259 6tdu:AD (4.32) BS01 ADP N/A GO:0005524 ... N/A 31738165
    6260 6tdu:BD (4.32) BS01 ADP N/A GO:0005524 ... N/A 31738165
    6261 6tdy:D (3.04) BS01 ADP N/A GO:0005524 ... N/A 31738165
    6262 6tdz:E (3.14) BS01 ADP N/A GO:0005524 ... N/A 31738165
    6263 6te0:F (3.92) BS01 ADP N/A GO:0005524 ... N/A 31738165
    6264 6tep:A (1.45) BS01 ADP 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    6265 6tep:B (1.45) BS01 ADP 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    6266 6tep:C (1.45) BS01 ADP 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    6267 6tep:D (1.45) BS01 ADP 2.7.1.6 GO:0004335 ... B7GUI0 32619452
    6268 6tle:A (1.75) BS01 ADP ? GO:0003777 ... P52732 N/A
    6269 6tle:B (1.75) BS01 ADP ? GO:0003777 ... P52732 N/A
    6270 6tmh:B (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6271 6tmh:D (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6272 6tmk:B1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6273 6tmk:B2 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6274 6tmk:D1 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6275 6tmk:D2 (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0A125YYY4 33402698
    6276 6tmu:B (3.54) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6277 6tmu:D (3.54) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6278 6tmu:F (3.54) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6279 6tmw:A (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6280 6tmw:B (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6281 6tmw:C (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6282 6tmw:D (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6283 6tmw:E (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6284 6tmw:F (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6285 6tmw:G (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6286 6tmw:H (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6287 6tmw:I (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6288 6tmw:J (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6289 6tmw:K (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6290 6tmw:L (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6291 6tmw:M (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6292 6tmw:N (5.91) BS01 ADP ? GO:0005524 ... Q2Z0T5 32339190
    6293 6trl:A (2.2) BS01 ADP ? GO:0003777 ... P52732 N/A
    6294 6trl:B (2.2) BS01 ADP ? GO:0003777 ... P52732 N/A
    6295 6tt7:A (3.5) BS01 ADP N/A GO:0005524 ... N/A 32929284
    6296 6tt7:B (3.5) BS02 ADP N/A GO:0005524 ... N/A 32929284
    6297 6tt7:C (3.5) BS02 ADP N/A GO:0005524 ... N/A 32929284
    6298 6tt7:D (3.5) BS01 ADP N/A GO:0005524 ... N/A 32929284
    6299 6tt7:F (3.5) BS01 ADP N/A GO:0005524 ... N/A 32929284
    6300 6tu4:A (2.6) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6301 6tu4:B (2.6) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6302 6tu4:C (2.6) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6303 6tu4:D (2.6) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6304 6tu4:F (2.6) BS02 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6305 6tu7:BP1 (3.1) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6306 6tu7:CP1 (3.1) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6307 6tu7:DP1 (3.1) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6308 6tu7:EP1 (3.1) BS01 ADP 3.6.4.- GO:0005200 ... Q8I4X0 35377914
    6309 6u1h:A (2.2) BS02 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6310 6u1h:B (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6311 6u1h:C (2.2) BS02 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6312 6u1h:D (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6313 6u1i:A (2.3) BS01 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6314 6u1i:C (2.3) BS02 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6315 6u1j:A (2.2) BS03 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6316 6u1j:C (2.2) BS04 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6317 6u1k:A (1.67) BS04 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6318 6u1k:B (1.67) BS04 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6319 6u1k:C (1.67) BS04 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6320 6u1k:D (1.67) BS04 ADP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    6321 6u96:A (3.8) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32348747
    6322 6u96:B (3.8) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32348747
    6323 6u96:C (3.8) BS02 ADP 3.6.4.- GO:0000287 ... P68135 32348747
    6324 6u96:D (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32348747
    6325 6u96:E (3.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 32348747
    6326 6uby:A (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6327 6uby:B (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6328 6uby:C (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6329 6uby:D (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6330 6uby:E (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6331 6uby:F (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6332 6uby:G (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6333 6uby:H (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6334 6uc0:A (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6335 6uc0:B (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6336 6uc0:C (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6337 6uc0:D (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6338 6uc0:E (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6339 6uc0:F (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6340 6uc0:G (7.5) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6341 6uc4:A (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6342 6uc4:B (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6343 6uc4:C (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6344 6uc4:D (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6345 6uc4:E (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6346 6uc4:F (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6347 6uc4:G (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6348 6uc4:H (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6349 6uc4:J (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6350 6uc4:K (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6351 6uc4:L (9.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31900364
    6352 6ude:A (1.95) BS01 ADP 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    6353 6ude:B (1.95) BS01 ADP 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    6354 6ude:C (1.95) BS01 ADP 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    6355 6ude:D (1.95) BS01 ADP 2.7.1.30 GO:0004370 ... A0A077EJ65 N/A
    6356 6uko:A (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6357 6uko:B (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6358 6uko:C (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6359 6uko:D (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6360 6uko:E (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6361 6uko:F (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6362 6uko:G (4.4) BS01 ADP ? GO:0005524 ... Q9CZP5 32042153
    6363 6unp:A (2.3) BS01 ADP 2.7.11.30 GO:0004672 ... Q13873 34400635
    6364 6unp:A (2.3) BS02 ADP 2.7.11.30 GO:0004672 ... Q13873 34400635
    6365 6unp:B (2.3) BS01 ADP 2.7.11.30 GO:0004672 ... Q13873 34400635
    6366 6up4:A (2.4) BS01 ADP 3.6.4.13 GO:0003676 ... Q8VHK9 32087197
    6367 6upv:A (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6368 6upv:B (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6369 6upv:C (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6370 6upv:D (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6371 6upv:E (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6372 6upw:A (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6373 6upw:B (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6374 6upw:C (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6375 6upw:D (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6376 6upw:E (2.9) BS01 ADP 3.6.4.- GO:0001725 ... P68139 32969337
    6377 6uqe:A (3.0) BS03 ADP ? GO:0005524 ... P0ABH9 32313240
    6378 6uqe:A (3.0) BS04 ADP ? GO:0005524 ... P0ABH9 32313240
    6379 6uqe:E (3.0) BS01 ADP ? GO:0005524 ... P0ABH9 32313240
    6380 6uqe:E (3.0) BS02 ADP ? GO:0005524 ... P0ABH9 32313240
    6381 6uqe:F (3.0) BS01 ADP ? GO:0005524 ... P0ABH9 32313240
    6382 6uqe:F (3.0) BS02 ADP ? GO:0005524 ... P0ABH9 32313240
    6383 6uqo:A (3.1) BS02 ADP 3.4.21.92 GO:0005524 ... P0ABH9 32313240
    6384 6uqo:A (3.1) BS03 ADP 3.4.21.92 GO:0005524 ... P0ABH9 32313240
    6385 6uqo:E (3.1) BS01 ADP 3.4.21.92 GO:0005524 ... P0ABH9 32313240
    6386 6uqo:F (3.1) BS01 ADP 3.4.21.92 GO:0005524 ... P0ABH9 32313240
    6387 6uqo:F (3.1) BS02 ADP 3.4.21.92 GO:0005524 ... P0ABH9 32313240
    6388 6uuw:A (2.85) BS01 ADP 2.3.3.8 GO:0003824 ... P53396 31873304
    6389 6uuw:B (2.85) BS01 ADP 2.3.3.8 GO:0003824 ... P53396 31873304
    6390 6uuw:C (2.85) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 31873304
    6391 6uuw:D (2.85) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 31873304
    6392 6uv1:A (2.307) BS02 ADP 3.6.4.13 GO:0003676 ... Q92841 31851931
    6393 6uv1:B (2.307) BS02 ADP 3.6.4.13 GO:0003676 ... Q92841 31851931
    6394 6uv2:A (1.894) BS02 ADP 3.6.4.13 GO:0003676 ... Q92841 31851931
    6395 6uv3:A (1.597) BS02 ADP 3.6.4.13 GO:0003676 ... Q92841 31851931
    6396 6uv4:A (1.7) BS02 ADP 3.6.4.13 GO:0003676 ... Q92841 31851931
    6397 6uxw:A (8.96) BS05 ADP 3.6.4.- GO:0000182 ... P22082 32188938
    6398 6uy0:A (3.23) BS02 ADP 7.6.2.2
    7.6.2.3
    GO:0005524 ... Q8HXQ5 32458799
    6399 6v11:A (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    6400 6v11:B (3.8) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218