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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6001 6rdq:X (4.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6002 6rdq:Y (4.0) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6003 6rdr:X (4.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6004 6rdr:Y (4.1) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6005 6rds:X (3.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6006 6rds:Y (3.8) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6007 6rdt:U (3.4) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6008 6rdt:X (3.4) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6009 6rdt:Y (3.4) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6010 6rdu:U (3.5) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6011 6rdu:X (3.5) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6012 6rdu:Y (3.5) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6013 6rdv:U (3.1) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6014 6rdv:X (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6015 6rdv:Y (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6016 6rdw:X (3.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6017 6rdw:Y (3.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6018 6rdx:X (3.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6019 6rdx:Y (3.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6020 6rdy:X (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6021 6rdy:Y (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6022 6rdz:Y (3.5) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6023 6rdz:Z (3.5) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6024 6re0:Y (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6025 6re0:Z (3.6) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6026 6re1:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6027 6re1:Z (3.2) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6028 6re2:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6029 6re2:Z (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6030 6re3:Y (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6031 6re3:Z (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6032 6re4:Y (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6033 6re4:Z (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6034 6re5:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6035 6re5:Z (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6036 6re6:Y (3.4) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6037 6re6:Z (3.4) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6038 6re7:Y (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6039 6re7:Z (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6040 6re8:Y (3.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6041 6re8:Z (3.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6042 6re9:Y (3.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6043 6re9:Z (3.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6044 6rea:Y (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6045 6rea:Z (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6046 6reb:U (3.2) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6047 6reb:X (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6048 6reb:Z (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6049 6rec:U (3.3) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6050 6rec:X (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6051 6rec:Z (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6052 6red:U (3.0) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6053 6red:X (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6054 6red:Z (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6055 6ree:X (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6056 6ree:Z (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6057 6ref:X (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6058 6ref:Z (3.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6059 6rep:X (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6060 6rep:Z (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6061 6rer:X (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6062 6rer:Z (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6063 6res:U (4.3) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6064 6res:X (4.3) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6065 6res:Z (4.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6066 6ret:U (4.3) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6067 6ret:X (4.3) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6068 6ret:Z (4.3) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6069 6reu:U (4.2) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    6070 6reu:X (4.2) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6071 6reu:Z (4.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6072 6rfv:A (2.83) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6073 6rfv:B (2.83) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6074 6rgy:A (2.2) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6075 6rgy:B (2.2) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6076 6rgz:A (2.35) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6077 6rgz:B (2.35) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6078 6rh0:A (2.87) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6079 6rh0:B (2.87) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6080 6rh1:A (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6081 6rh1:B (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6082 6rh2:A (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6083 6rh2:B (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6084 6rh7:A (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6085 6rh7:B (2.0) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6086 6rh8:A (1.9) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6087 6rh8:B (1.9) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 32034139
    6088 6rj4:B (1.9) BS01 ADP ? GO:0005737 ... P84253 31811022
    6089 6rj4:D (1.9) BS01 ADP ? GO:0005737 ... P84253 31811022
    6090 6rj4:F (1.9) BS01 ADP ? GO:0005737 ... P84253 31811022
    6091 6rke:B (1.7) BS01 ADP ? GO:0005737 ... P84253 31811022
    6092 6rke:D (1.7) BS02 ADP ? GO:0005737 ... P84253 31811022
    6093 6rke:F (1.7) BS02 ADP ? GO:0005737 ... P84253 31811022
    6094 6rke:H (1.7) BS01 ADP ? GO:0005737 ... P84253 31811022
    6095 6rke:J (1.7) BS01 ADP ? GO:0005737 ... P84253 31811022
    6096 6rke:L (1.7) BS01 ADP ? GO:0005737 ... P84253 31811022
    6097 6rla:A (3.9) BS01 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6098 6rla:A (3.9) BS04 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6099 6rla:A (3.9) BS05 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6100 6rla:B (3.9) BS01 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6101 6rla:B (3.9) BS04 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6102 6rla:B (3.9) BS05 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6103 6rm8:A (1.95) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6104 6rm9:A (1.85) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6105 6rma:A (2.1) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6106 6rmb:A (2.5) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6107 6rmc:A (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6108 6rmc:B (2.6) BS01 ADP 3.6.4.13 GO:0003676 ... G0SEG4 31974312
    6109 6rn2:A (6.2) BS03 ADP N/A GO:0005524 ... N/A 31216466
    6110 6rn2:F (6.2) BS02 ADP N/A GO:0005524 ... N/A 31216466
    6111 6rn3:A (4.0) BS03 ADP N/A GO:0005524 ... N/A 31216466
    6112 6rn3:F (4.0) BS01 ADP N/A GO:0005524 ... N/A 31216466
    6113 6rn4:F (4.2) BS02 ADP N/A GO:0005524 ... N/A 31216466
    6114 6ro1:A (3.07) BS02 ADP 3.6.4.13 GO:0000176 ... P42285 31358741
    6115 6rqc:2 (4.4) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 31748745
    6116 6rqc:2 (4.4) BS03 ADP 3.6.4.12 GO:0000727 ... P29469 31748745
    6117 6rqc:3 (4.4) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 31748745
    6118 6rqc:5 (4.4) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 31748745
    6119 6rqc:5 (4.4) BS03 ADP 3.6.4.12 GO:0000727 ... P29496 31748745
    6120 6rqc:7 (4.4) BS02 ADP 3.6.4.12 GO:0000727 ... P38132 31748745
    6121 6rsw:A (1.95) BS01 ADP 3.6.4.- GO:0000287 ... P68135 31757941
    6122 6ru7:A (2.08) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6123 6ru7:B (2.08) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6124 6ru8:A (1.92) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6125 6ru8:B (1.92) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6126 6ru8:C (1.92) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6127 6ru8:D (1.92) BS02 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 32719556
    6128 6rwz:A (1.7) BS03 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 33717640
    6129 6s02:A (1.87) BS01 ADP ? GO:0005524 ... K7NTP5 31690116
    6130 6s02:B (1.87) BS01 ADP ? GO:0005524 ... K7NTP5 31690116
    6131 6s0j:A (1.5) BS02 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 33717640
    6132 6s2p:N (2.5) BS01 ADP ? GO:0006952 ... A0A3Q7EK40 31461469
    6133 6s3h:A (2.06) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6134 6s3h:B (2.06) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6135 6s3i:A (2.455) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6136 6s3m:A (2.113) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6137 6s3m:B (2.113) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6138 6s3n:A (2.533) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6139 6s3n:B (2.533) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6140 6s3o:A (1.974) BS02 ADP ? GO:0000723 ... K7RJ88 33784404
    6141 6s4f:A (2.2) BS02 ADP 1.5.1.15
    3.5.4.9
    GO:0000287 ... P13995 35228749
    6142 6s5b:A (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6143 6s5b:B (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6144 6s5b:C (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6145 6s5b:D (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6146 6s5b:E (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6147 6s5b:F (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6148 6s5b:G (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6149 6s5b:H (3.052) BS01 ADP ? GO:0005515 ... O32080 31868587
    6150 6s5g:A (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6151 6s5g:B (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6152 6s5g:C (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6153 6s5g:D (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6154 6s5g:E (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6155 6s5g:F (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6156 6s5g:G (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6157 6s5g:H (4.33) BS01 ADP ? GO:0005515 ... O32080 31868587
    6158 6s5o:A (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6159 6s5o:B (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6160 6s5o:C (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6161 6s5o:D (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6162 6s5o:E (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6163 6s5o:F (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6164 6s5o:G (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6165 6s5o:H (3.983) BS01 ADP ? GO:0005515 ... O32080 31868587
    6166 6s7r:A (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6167 6s7r:B (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6168 6s7r:C (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6169 6s7r:D (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6170 6s7r:E (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6171 6s7r:F (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6172 6s7r:G (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6173 6s7r:H (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6174 6s7r:I (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6175 6s7r:J (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6176 6s7r:K (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6177 6s7r:L (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6178 6s7r:M (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6179 6s7r:N (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6180 6s7r:O (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6181 6s7r:P (3.73) BS01 ADP ? GO:0005515 ... O32080 31868587
    6182 6s85:C (4.2) BS02 ADP ? GO:0000014 ... P13458 31492634
    6183 6s85:C (4.2) BS03 ADP ? GO:0000014 ... P13458 31492634
    6184 6s85:D (4.2) BS03 ADP ? GO:0000014 ... P13458 31492634
    6185 6s85:D (4.2) BS04 ADP ? GO:0000014 ... P13458 31492634
    6186 6sc2:A (3.9) BS01 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6187 6sc2:A (3.9) BS03 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6188 6sc2:A (3.9) BS04 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6189 6sc2:B (3.9) BS01 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6190 6sc2:B (3.9) BS03 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6191 6sc2:B (3.9) BS04 ADP ?
    2.1.1.63
    GO:0003677 ... B0I1S0
    E5BBQ0
    31451806
    6192 6sh3:A (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6193 6sh3:B (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6194 6sh3:C (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6195 6sh3:D (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6196 6sh3:E (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6197 6sh3:F (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6198 6sh3:G (3.4) BS01 ADP ? GO:0005524 ... P32839 31988523
    6199 6sh6:A (1.85) BS01 ADP 3.6.4.13 GO:0003676 ... O43143 32179686
    6200 6sza:A (6.0) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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