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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 6pen:E (4.2) BS01 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5802 6pk7:A (3.1) BS01 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    5803 6pk7:D (3.1) BS02 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    5804 6pk7:E (3.1) BS02 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    5805 6pk7:F (3.1) BS03 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    5806 6po1:F (4.2) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5807 6po3:F (4.28) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5808 6pod:A (4.05) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5809 6pos:F (4.12) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5810 6pp5:F (3.98) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5811 6pp6:F (4.28) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5812 6pp7:A (4.05) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5813 6pp8:F (4.12) BS01 ADP ? GO:0005524 ... P0A6H1 32108573
    5814 6pqv:D (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5815 6pqv:E (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5816 6pqv:F (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5817 6pxi:E (3.447) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5818 6pxi:F (3.447) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5819 6pxk:A (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5820 6pxk:B (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5821 6pxk:C (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5822 6pxk:D (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5823 6pxk:E (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5824 6pxk:F (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5825 6pxk:G (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5826 6pxk:H (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5827 6pxk:I (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5828 6pxk:J (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5829 6pxk:K (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5830 6pxk:L (3.647) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5831 6pxl:A (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5832 6pxl:B (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5833 6pxl:C (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5834 6pxl:D (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5835 6pxl:E (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5836 6pxl:F (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5837 6pxl:G (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5838 6pxl:H (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5839 6pxl:I (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5840 6pxl:J (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5841 6pxl:K (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5842 6pxl:L (3.741) BS01 ADP ? GO:0000287 ... P0A6H5 33472065
    5843 6q45:C (3.6) BS02 ADP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    5844 6q45:D (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... Q8RGE2 31238823
    5845 6q45:F (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... Q8RGE2 31238823
    5846 6q45:K (3.6) BS02 ADP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    5847 6q45:L (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... Q8RGE2 31238823
    5848 6q45:N (3.6) BS01 ADP 7.1.2.2 GO:0005524 ... Q8RGE2 31238823
    5849 6q7l:V (7.6) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5850 6q7l:V (7.6) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5851 6q7l:W (7.6) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5852 6q7l:W (7.6) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5853 6q7l:X (7.6) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5854 6q7l:X (7.6) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5855 6q7l:Y (7.6) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5856 6q7l:Y (7.6) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5857 6q7l:Z (7.6) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5858 6q7m:V (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5859 6q7m:V (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5860 6q7m:W (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5861 6q7m:W (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5862 6q7m:X (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5863 6q7m:X (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5864 6q7m:Y (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5865 6q7m:Y (7.8) BS02 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5866 6q7m:Z (7.8) BS01 ADP 3.6.3.- GO:0005515 ... P31473 31992852
    5867 6q81:A (7.9) BS01 ADP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 30545335
    5868 6q81:A (7.9) BS02 ADP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 30545335
    5869 6q93:A (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5870 6q93:B (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5871 6q93:C (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5872 6q93:D (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5873 6q93:E (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5874 6q93:F (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5875 6q93:G (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5876 6q93:H (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    5877 6qb8:Q (3.97) BS01 ADP ? GO:0002199 ... P50990 31253771
    5878 6qb8:q (3.97) BS01 ADP ? GO:0002199 ... P50990 31253771
    5879 6qdj:A (1.884) BS01 ADP ? GO:0003774 ... P02566 31636255
    5880 6qel:A (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5881 6qel:A (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5882 6qel:B (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5883 6qel:B (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5884 6qel:C (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5885 6qel:C (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5886 6qel:D (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5887 6qel:D (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5888 6qel:E (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5889 6qel:E (3.9) BS03 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5890 6qel:F (3.9) BS01 ADP 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    5891 6qel:G (3.9) BS01 ADP ? GO:0003677 ... P0AEF0 30797687
    5892 6qem:G (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5893 6qem:H (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5894 6qem:I (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5895 6qem:J (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5896 6qem:K (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5897 6qem:L (3.4) BS02 ADP 3.6.4.12 GO:0003677 ... P0AEF0 30797687
    5898 6qf4:A (2.495) BS02 ADP 2.7.11.1 GO:0004672 ... O94768 31316815
    5899 6qfb:A (3.25) BS03 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5900 6qfb:B (3.25) BS05 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5901 6qfb:C (3.25) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5902 6qfb:D (3.25) BS03 ADP 2.3.3.8 GO:0003824 ... P53396 30944476
    5903 6qi8:A (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5904 6qi8:B (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5905 6qi8:C (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5906 6qi8:D (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 31049401
    5907 6qi8:E (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 31049401
    5908 6qi8:F (3.75) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 31049401
    5909 6qi9:A (4.63) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5910 6qi9:B (4.63) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5911 6qi9:C (4.63) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 31049401
    5912 6qi9:E (4.63) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 31049401
    5913 6qi9:F (4.63) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 31049401
    5914 6qid:A (2.204) BS01 ADP 3.6.4.13 GO:0003676 ... G0RY84 30828714
    5915 6qie:A (2.7) BS01 ADP 3.6.4.13 GO:0003676 ... G0RY84 30828714
    5916 6qp0:A (2.409) BS01 ADP ? N/A G0SHI1 30916349 MOAD: Kd=1uM
    5917 6qs4:B (4.2) BS03 ADP ? GO:0005524 ... E0J719 31216466
    5918 6qs4:F (4.2) BS02 ADP ? GO:0005524 ... E0J719 31216466
    5919 6qs6:A (3.9) BS03 ADP ? GO:0005515 ... P63284 31216466
    5920 6qs6:F (3.9) BS01 ADP ? GO:0005515 ... P63284 31216466
    5921 6qs7:F (3.8) BS01 ADP ? GO:0005515 ... P63284 31216466
    5922 6qs8:F (3.9) BS01 ADP ? GO:0005515 ... P63284 31216466
    5923 6qum:A (3.25) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5924 6qum:A (3.25) BS03 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5925 6qv3:A (2.9) BS01 ADP ? GO:0003676 ... G0S0B9 31859026
    5926 6qv3:A (2.9) BS02 ADP ? GO:0003676 ... G0S0B9 31859026
    5927 6qv3:A (2.9) BS03 ADP ? GO:0003676 ... G0S0B9 31859026
    5928 6r0w:C (3.6) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5929 6r0w:C (3.6) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5930 6r0w:E (3.6) BS01 ADP ? GO:0005515 ... Q56404 31439765
    5931 6r0y:B (3.9) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5932 6r0y:B (3.9) BS03 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5933 6r0y:D (3.9) BS01 ADP ? GO:0005515 ... Q56404 31439765
    5934 6r0z:A (3.8) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5935 6r0z:A (3.8) BS03 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5936 6r10:A (4.3) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5937 6r10:A (4.3) BS02 ADP 7.1.2.2 GO:0005515 ... Q56403 31439765
    5938 6r10:F (4.3) BS01 ADP ? GO:0005515 ... Q56404 31439765
    5939 6r49:A (2.209) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 31026091
    5940 6r4a:A (1.937) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 31026091
    5941 6r4b:A (2.15) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 31026091
    5942 6r4c:A (2.04) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 31026091
    5943 6r4d:A (2.009) BS01 ADP 2.7.11.1 GO:0000212 ... O14965 31026091
    5944 6rad:A (2.796) BS01 ADP 7.4.2.8 GO:0005524 ... P0A1B9 31393998
    5945 6raf:B (3.8) BS01 ADP ? GO:0005515 ... Q72J04 31316210
    5946 6rag:A (4.2) BS02 ADP ? GO:0005515 ... Q72J05 31316210
    5947 6ral:A (3.5) BS01 ADP ? GO:0005515 ... Q72J05 31316210
    5948 6ral:B (3.5) BS01 ADP ? GO:0005515 ... Q72J04 31316210
    5949 6ram:A (3.8) BS01 ADP ? GO:0005515 ... Q72J05 31316210
    5950 6raw:3 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    5951 6raw:4 (3.7) BS01 ADP 3.6.4.12 GO:0000727 ... Q26454 31484077
    5952 6raw:6 (3.7) BS03 ADP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    5953 6raw:7 (3.7) BS01 ADP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    5954 6rax:4 (3.99) BS01 ADP 3.6.4.12 GO:0000727 ... Q26454 31484077
    5955 6rax:6 (3.99) BS02 ADP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    5956 6rax:7 (3.99) BS01 ADP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    5957 6ray:3 (4.28) BS03 ADP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    5958 6ray:5 (4.28) BS01 ADP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    5959 6ray:7 (4.28) BS03 ADP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    5960 6raz:2 (4.46) BS01 ADP 3.6.4.12 GO:0000727 ... P49735 31484077
    5961 6raz:2 (4.46) BS02 ADP 3.6.4.12 GO:0000727 ... P49735 31484077
    5962 6raz:5 (4.46) BS01 ADP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    5963 6rd4:X (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5964 6rd4:Y (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5965 6rd9:X (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5966 6rd9:Y (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5967 6rdb:X (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5968 6rdb:Y (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5969 6rdc:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5970 6rdc:Z (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5971 6rde:Y (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5972 6rde:Z (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5973 6rdg:U (2.9) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5974 6rdg:V (2.9) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5975 6rdg:X (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5976 6rdg:Z (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5977 6rdh:U (3.0) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5978 6rdh:X (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5979 6rdh:Y (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5980 6rdi:U (3.2) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5981 6rdi:X (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5982 6rdi:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5983 6rdj:U (2.9) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5984 6rdj:X (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5985 6rdj:Y (2.9) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5986 6rdk:U (3.7) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5987 6rdk:X (3.7) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5988 6rdk:Y (3.7) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5989 6rdl:U (3.7) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5990 6rdl:X (3.7) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5991 6rdl:Y (3.7) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5992 6rdm:U (3.44) BS02 ADP ? GO:0005524 ... A0ZW40 31221832
    5993 6rdm:X (3.44) BS02 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5994 6rdm:Y (3.44) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5995 6rdn:X (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5996 6rdn:Y (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5997 6rdo:X (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5998 6rdo:Y (3.1) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    5999 6rdp:X (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    6000 6rdp:Y (2.8) BS01 ADP 7.1.2.2 GO:0005524 ... A0ZW41 31221832

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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