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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5601 6mt9:A (2.5) BS02 ADP 1.17.4.1 GO:0004748 ... P50620 31201319
    5602 6mv9:A (2.95) BS02 ADP 1.17.4.1 GO:0004748 ... P50620 31201319
    5603 6mv9:B (2.95) BS03 ADP 1.17.4.1 GO:0004748 ... P50620 31201319
    5604 6mve:A (2.55) BS02 ADP 1.17.4.1 GO:0004748 ... P50620 31201319
    5605 6n2i:A (3.5) BS01 ADP 3.4.21.53 GO:0004176 ... P0A9M0 31237118
    5606 6n2y:B (3.0) BS02 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    5607 6n2y:F (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    5608 6n2z:D (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    5609 6n30:A (3.2) BS03 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    5610 6n30:E (3.2) BS01 ADP 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163
    5611 6n4l:A (1.13) BS01 ADP 1.18.6.1 GO:0005524 ... P00459 30698901
    5612 6n4m:A (1.58) BS01 ADP 1.18.6.1 GO:0005524 ... P00459 30698901
    5613 6n9a:D (2.5) BS03 ADP 2.3.1.234 GO:0002949 ... Q9WXZ2 31114923
    5614 6n9l:A (2.01) BS02 ADP ? GO:0003677 ... Q9WYV0 30892613 MOAD: Kd=0.1uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    5615 6n9l:A (2.01) BS03 ADP ? GO:0003677 ... Q9WYV0 30892613 MOAD: Kd=0.1uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    5616 6ndy:A (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    5617 6ndy:B (3.6) BS03 ADP ? GO:0005524 ... P52917 31184588
    5618 6ndy:C (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    5619 6ndy:D (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    5620 6ndy:E (3.6) BS01 ADP ? GO:0005524 ... P52917 31184588
    5621 6ndy:E (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    5622 6ne3:W (3.9) BS03 ADP 3.6.4.- GO:0005524 ... O60264 31210637
    5623 6nfe:A (1.75) BS04 ADP 2.7.6.1 GO:0000287 ... Q5ZY30 N/A
    5624 6nfe:A (1.75) BS05 ADP 2.7.6.1 GO:0000287 ... Q5ZY30 N/A
    5625 6nfe:B (1.75) BS01 ADP 2.7.6.1 GO:0000287 ... Q5ZY30 N/A
    5626 6nfe:B (1.75) BS02 ADP 2.7.6.1 GO:0000287 ... Q5ZY30 N/A
    5627 6nhk:A (2.777) BS01 ADP ? GO:0005524 ... P38646 30933555
    5628 6nhk:B (2.777) BS01 ADP ? GO:0005524 ... P38646 30933555
    5629 6nje:A (2.2) BS01 ADP ? GO:0003777 ... Q14807 N/A
    5630 6njo:B (3.34) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5631 6njo:C (3.34) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5632 6njo:D (3.34) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5633 6njo:E (3.34) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5634 6njp:B (3.29) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5635 6njp:C (3.29) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5636 6njp:D (3.29) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5637 6njp:E (3.29) BS01 ADP 7.4.2.8 GO:0005515 ... B7UMA6 30733444
    5638 6no0:A (2.209) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5639 6no0:B (2.209) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5640 6no1:A (2.44) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5641 6no2:A (2.159) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5642 6no2:B (2.159) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5643 6no3:A (1.939) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5644 6no3:B (1.939) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5645 6no4:A (2.24) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5646 6no5:A (2.069) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5647 6no5:B (2.069) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5648 6no5:C (2.069) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5649 6no5:D (2.069) BS01 ADP 6.2.1.5 GO:0005524 ... B3FHP0 31282474
    5650 6non:B (2.68) BS01 ADP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    5651 6npy:A (3.8) BS01 ADP 3.6.4.- GO:0000139 ... Q96P20 31189953
    5652 6nr6:A (1.9) BS02 ADP ? GO:0000166 ... A0A166Q2C7 31197035
    5653 6nr6:B (1.9) BS02 ADP ? GO:0000166 ... A0A166Q2C7 31197035
    5654 6nyb:B (4.1) BS01 ADP 2.7.12.2 GO:0000165 ... Q02750 31581174
    5655 6nyy:E (3.0) BS03 ADP 3.4.24.-
    3.6.-.-
    GO:0004176 ... Q9Y4W6 31327635
    5656 6o0h:A (3.67) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 30944472
    5657 6o0h:B (3.67) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 30944472
    5658 6o0h:C (3.67) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 30944472
    5659 6o0h:D (3.67) BS02 ADP 2.3.3.8 GO:0003824 ... P53396 30944472
    5660 6o8e:A (2.61) BS03 ADP ? GO:0003677 ... P56981 31549070
    5661 6o8e:B (2.61) BS03 ADP ? GO:0003677 ... P56981 31549070
    5662 6o8g:A (2.64) BS03 ADP ? GO:0003677 ... P56981 31549070
    5663 6o8g:B (2.64) BS03 ADP ? GO:0003677 ... P56981 31549070
    5664 6o8g:C (2.64) BS03 ADP ? GO:0003677 ... P56981 31549070
    5665 6oa9:E (3.9) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5666 6oaa:B (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5667 6oaa:B (4.1) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5668 6oaa:C (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5669 6oaa:C (4.1) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5670 6oaa:C (4.1) BS05 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5671 6oaa:C (4.1) BS06 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5672 6oaa:D (4.1) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5673 6oaa:D (4.1) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5674 6oaa:E (4.1) BS01 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5675 6oaa:E (4.1) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5676 6oaa:E (4.1) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5677 6oab:A (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5678 6oab:A (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5679 6oab:B (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5680 6oab:B (3.6) BS06 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5681 6oab:C (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5682 6oab:C (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5683 6oab:C (3.6) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5684 6oab:D (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5685 6oab:D (3.6) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5686 6oab:E (3.6) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5687 6oab:E (3.6) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249135
    5688 6oax:A (2.9) BS04 ADP ? GO:0005515 ... P63284 31160557
    5689 6oax:F (2.9) BS01 ADP ? GO:0005515 ... P63284 31160557
    5690 6oax:F (2.9) BS02 ADP ? GO:0005515 ... P63284 31160557
    5691 6oay:A (3.3) BS02 ADP ? GO:0005515 ... P63284 31160557
    5692 6oay:B (3.3) BS03 ADP ? GO:0005515 ... P63284 31160557
    5693 6oay:F (3.3) BS01 ADP ? GO:0005515 ... P63284 31160557
    5694 6oby:A (2.87) BS01 ADP ? GO:0005524 ... O28015 31794207
    5695 6oby:B (2.87) BS02 ADP ? GO:0005524 ... O28015 31794207
    5696 6og1:A (3.3) BS02 ADP ? GO:0005515 ... P63284 31160557
    5697 6og1:F (3.3) BS01 ADP ? GO:0005515 ... P63284 31160557
    5698 6og1:F (3.3) BS02 ADP ? GO:0005515 ... P63284 31160557
    5699 6og2:A (4.1) BS01 ADP ? GO:0005515 ... P63284 31160557
    5700 6og2:F (4.1) BS01 ADP ? GO:0005515 ... P63284 31160557
    5701 6oid:A (2.365) BS01 ADP 2.7.1.172 GO:0005524 ... Q9LEW8 32636308
    5702 6oid:B (2.365) BS01 ADP 2.7.1.172 GO:0005524 ... Q9LEW8 32636308
    5703 6ojz:A (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5704 6ojz:B (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5705 6ojz:C (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5706 6ojz:D (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5707 6ojz:E (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5708 6ojz:F (3.027) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5709 6ok2:A (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5710 6ok2:B (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5711 6ok2:C (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5712 6ok2:D (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5713 6ok2:E (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5714 6ok2:F (3.287) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5715 6okv:C (4.007) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5716 6okv:F (4.007) BS01 ADP ? GO:0005524 ... Q39VU6 31729381
    5717 6omb:A (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5718 6omb:A (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5719 6omb:B (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5720 6omb:B (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5721 6omb:C (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5722 6omb:C (3.7) BS05 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5723 6omb:D (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5724 6omb:D (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5725 6omb:E (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5726 6omb:E (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5727 6omb:E (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5728 6on2:E (3.0) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    5729 6on2:F (3.0) BS01 ADP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    5730 6oo2:A (4.4) BS02 ADP ? GO:0005524 ... P52917 31184588
    5731 6oo2:B (4.4) BS03 ADP ? GO:0005524 ... P52917 31184588
    5732 6oo2:C (4.4) BS02 ADP ? GO:0005524 ... P52917 31184588
    5733 6oo2:D (4.4) BS02 ADP ? GO:0005524 ... P52917 31184588
    5734 6oo2:E (4.4) BS01 ADP ? GO:0005524 ... P52917 31184588
    5735 6oo2:E (4.4) BS02 ADP ? GO:0005524 ... P52917 31184588
    5736 6opc:A (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5737 6opc:A (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5738 6opc:B (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5739 6opc:B (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5740 6opc:C (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5741 6opc:C (3.7) BS05 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5742 6opc:D (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5743 6opc:D (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5744 6opc:E (3.7) BS02 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5745 6opc:E (3.7) BS03 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5746 6opc:E (3.7) BS04 ADP 3.6.4.6 GO:0000837 ... P25694 31249134
    5747 6oqr:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5748 6oqr:E (3.1) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5749 6oqr:F (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5750 6oqs:D (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5751 6oqs:E (3.3) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5752 6oqs:F (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5753 6oqt:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5754 6oqt:E (3.1) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5755 6oqt:F (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5756 6oqu:D (3.2) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5757 6oqu:E (3.2) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5758 6oqu:F (3.2) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5759 6oqv:D (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5760 6oqv:E (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5761 6oqv:F (3.3) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5762 6oqw:D (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5763 6oqw:E (3.1) BS02 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5764 6oqw:F (3.1) BS01 ADP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    5765 6p07:F (3.2) BS04 ADP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    5766 6p0y:A (2.6) BS01 ADP 2.7.1.40 GO:0000287 ... Q5CSM7 31342570
    5767 6p0y:B (2.6) BS01 ADP 2.7.1.40 GO:0000287 ... Q5CSM7 31342570
    5768 6p2d:A (1.79) BS02 ADP 2.7.1.3 GO:0004454 ... P97328 N/A
    5769 6p7k:A (1.722) BS01 ADP N/A GO:0004420 ... N/A 31469273
    5770 6pam:A (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5771 6pam:B (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5772 6pam:C (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5773 6pam:D (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5774 6pam:E (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5775 6pam:F (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5776 6pam:G (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5777 6pam:H (3.7) BS01 ADP 7.-.-.- GO:0005524 ... Q2G506 32703810
    5778 6pdw:B (3.1) BS02 ADP ? GO:0005524 ... G0S654 31999255
    5779 6pdw:C (3.1) BS03 ADP ? GO:0005524 ... G0S654 31999255
    5780 6pdw:D (3.1) BS03 ADP ? GO:0005524 ... G0S654 31999255
    5781 6pdw:E (3.1) BS03 ADP ? GO:0005524 ... G0S654 31999255
    5782 6pdy:A (3.7) BS01 ADP ? GO:0005524 ... G0S654 31999255
    5783 6pdy:B (3.7) BS02 ADP ? GO:0005524 ... G0S654 31999255
    5784 6pdy:C (3.7) BS02 ADP ? GO:0005524 ... G0S654 31999255
    5785 6pdy:C (3.7) BS03 ADP ? GO:0005524 ... G0S654 31999255
    5786 6pdy:D (3.7) BS02 ADP ? GO:0005524 ... G0S654 31999255
    5787 6pdy:E (3.7) BS02 ADP ? GO:0005524 ... G0S654 31999255
    5788 6pek:A (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5789 6pek:B (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5790 6pek:C (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5791 6pek:C (4.2) BS04 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5792 6pek:D (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5793 6pek:D (4.2) BS03 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5794 6pek:E (4.2) BS01 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5795 6pen:A (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5796 6pen:B (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5797 6pen:C (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5798 6pen:C (4.2) BS04 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5799 6pen:D (4.2) BS02 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681
    5800 6pen:D (4.2) BS03 ADP 5.6.1.1 GO:0005524 ... Q9UBP0 31767681

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218