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BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 5txv:U (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4602 5txv:V (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4603 5txv:W (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4604 5txv:X (7.086) BS01 ADP ? GO:0000287 ... P0A6H5 28223361
    4605 5u3c:A (4.6) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4606 5u3c:B (4.6) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4607 5u3c:C (4.6) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4608 5u3c:D (4.6) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4609 5u6r:A (5.7) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4610 5u6r:B (5.7) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4611 5u6r:C (5.7) BS03 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4612 5u6r:D (5.7) BS02 ADP 6.3.4.2 GO:0000287 ... P0A7E5 28459447
    4613 5ubv:A (2.45) BS01 ADP ? GO:0005524 ... G2QPI5 N/A
    4614 5ubv:B (2.45) BS01 ADP ? GO:0005524 ... G2QPI5 N/A
    4615 5ufu:C (3.45) BS03 ADP ? GO:0004672 ... P80385 28467931
    4616 5uht:A (2.68) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 29235472
    4617 5uht:C (2.68) BS01 ADP 2.7.13.3 GO:0000155 ... Q9WZV7 29235472
    4618 5uie:A (5.7) BS01 ADP ? GO:0001778 ... P52917 28379137
    4619 5uie:B (5.7) BS01 ADP ? GO:0001778 ... P52917 28379137
    4620 5uie:C (5.7) BS02 ADP ? GO:0001778 ... P52917 28379137
    4621 5uie:D (5.7) BS02 ADP ? GO:0001778 ... P52917 28379137
    4622 5uie:E (5.7) BS01 ADP ? GO:0001778 ... P52917 28379137
    4623 5uiv:A (2.45) BS02 ADP 2.7.4.9 GO:0000166 ... Q59TV7 28742342
    4624 5ukd:A (1.9) BS01 ADP 2.7.4.14 GO:0000287 ... P20425 10426946
    4625 5umb:A (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    4626 5umb:B (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    4627 5umb:C (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    4628 5umb:D (2.3) BS01 ADP 3.6.4.10 GO:0005524 ... Q05866 29985421
    4629 5uyx:A (3.5) BS01 ADP ? GO:0003730 ... P48643 28623285
    4630 5uyx:B (3.5) BS01 ADP ? GO:0003730 ... P48643 28623285
    4631 5uyx:C (3.5) BS01 ADP ? GO:0003730 ... P48643 28623285
    4632 5uyx:D (3.5) BS01 ADP ? GO:0003730 ... P48643 28623285
    4633 5uyz:A (3.6) BS01 ADP ? GO:0003730 ... P48643 28623285
    4634 5uyz:B (3.6) BS01 ADP ? GO:0003730 ... P48643 28623285
    4635 5uyz:C (3.6) BS01 ADP ? GO:0003730 ... P48643 28623285
    4636 5uyz:D (3.6) BS01 ADP ? GO:0003730 ... P48643 28623285
    4637 5vhc:D (2.49) BS03 ADP 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    4638 5vhd:D (2.55) BS01 ADP 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    4639 5vr8:C (1.999) BS01 ADP 1.1.1.22 GO:0001702 ... O60701 30420606
    4640 5vr8:F (1.999) BS01 ADP 1.1.1.22 GO:0001702 ... O60701 30420606
    4641 5vy8:A (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4642 5vy8:A (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4643 5vy8:B (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4644 5vy8:B (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4645 5vy8:C (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4646 5vy8:C (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4647 5vy8:D (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4648 5vy8:D (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4649 5vy8:E (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4650 5vy8:E (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4651 5vy8:F (5.6) BS01 ADP ? GO:0005515 ... P31539 28619716
    4652 5vy8:F (5.6) BS02 ADP ? GO:0005515 ... P31539 28619716
    4653 5vyz:A (2.3) BS02 ADP N/A GO:0003824 ... N/A 28808024
    4654 5vyz:B (2.3) BS03 ADP N/A GO:0003824 ... N/A 28808024
    4655 5vyz:C (2.3) BS02 ADP N/A GO:0003824 ... N/A 28808024
    4656 5vyz:D (2.3) BS03 ADP N/A GO:0003824 ... N/A 28808024
    4657 5vz0:A (2.0) BS02 ADP N/A GO:0003824 ... N/A 28808024
    4658 5vz0:B (2.0) BS03 ADP N/A GO:0003824 ... N/A 28808024
    4659 5vz0:D (2.0) BS03 ADP N/A GO:0003824 ... N/A 28808024
    4660 5w2h:A (1.9) BS01 ADP 2.7.1.140
    2.7.1.151
    2.7.1.153
    GO:0016301 ... Q8NFU5 28882892
    4661 5w2i:A (1.6) BS01 ADP 2.7.1.140
    2.7.1.151
    2.7.1.153
    GO:0016301 ... Q8NFU5 28882892
    4662 5w3d:A (2.79) BS01 ADP 3.6.4.- GO:0003777 ... P20480 29123223
    4663 5w3d:B (2.79) BS01 ADP 3.6.4.- GO:0003777 ... P20480 29123223
    4664 5w74:A (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4665 5w74:B (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4666 5w74:C (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4667 5w74:D (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4668 5w74:E (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4669 5w74:F (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4670 5w74:G (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4671 5w74:H (3.65) BS01 ADP ? GO:0005524 ... Q877G8 N/A
    4672 5wc2:A (2.5) BS01 ADP ? GO:0001556 ... Q15645 29208896
    4673 5wde:A (1.85) BS01 ADP ? GO:0003777 ... Q9BVG8 29123223
    4674 5wdh:A (2.248) BS01 ADP ? GO:0003777 ... Q9BW19 29123223
    4675 5x06:E (3.237) BS01 ADP ? GO:0000166 ... P69931 N/A
    4676 5x06:F (3.237) BS01 ADP ? GO:0000166 ... P69931 N/A
    4677 5x06:G (3.237) BS01 ADP ? GO:0000166 ... P69931 N/A
    4678 5x06:H (3.237) BS01 ADP ? GO:0000166 ... P69931 N/A
    4679 5x0g:A (1.9) BS02 ADP 2.7.1.226 GO:0005524 ... Q5JD03 28358477
    4680 5x17:A (2.0) BS01 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q9DC28 28886336
    4681 5x17:B (2.0) BS01 ADP 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q9DC28 28886336
    4682 5x1t:A (1.55) BS01 ADP ? GO:0004672 ... A0A1S4NYE5 29858276
    4683 5x8b:B (1.39) BS03 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    4684 5x9u:A (4.001) BS01 ADP ? GO:0005524 ... Q3AF10 29018216
    4685 5x9u:B (4.001) BS01 ADP ? GO:0005524 ... Q3AF10 29018216
    4686 5x9u:C (4.001) BS01 ADP ? GO:0005524 ... Q3AF10 29018216
    4687 5x9u:D (4.001) BS01 ADP ? GO:0005524 ... Q3AF10 29018216
    4688 5xa8:A (3.2) BS05 ADP 7.2.2.10 GO:0000166 ... P04191 28467821
    4689 5xb2:A (2.161) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4690 5xb2:B (2.161) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4691 5xb3:A (1.77) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4692 5xb3:B (1.77) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4693 5xdr:A (2.0) BS01 ADP 3.6.4.13 GO:0003676 ... O43143 28580923
    4694 5xja:A (3.43) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    4695 5xja:B (3.43) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    4696 5xjb:A (3.1) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    4697 5xjb:B (3.1) BS01 ADP ? GO:0003777 ... Q922S8 28903043
    4698 5xjc:D (3.6) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    4699 5xjc:D (3.6) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 28502770
    4700 5xza:A (1.9) BS01 ADP 2.7.1.11 GO:0003872 ... P99165 29940104
    4701 5y5x:A (5.0) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4702 5y5x:C (5.0) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4703 5y5y:A (4.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4704 5y5y:C (4.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4705 5y5z:B (6.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4706 5y5z:C (6.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4707 5y60:A (7.5) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4708 5y60:B (7.5) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 29311594
    4709 5y6m:A (2.002) BS02 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 29913559
    4710 5y6n:A (1.571) BS02 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 29913559
    4711 5ya2:A (2.701) BS01 ADP 2.7.1.189 GO:0005515 ... P77432 29868643
    4712 5ya2:B (2.701) BS01 ADP 2.7.1.189 GO:0005515 ... P77432 29868643
    4713 5ygg:A (1.671) BS01 ADP 2.7.1.4 GO:0000166 ... A0A0H3AER7 30446722
    4714 5yk0:A (2.102) BS01 ADP ? GO:0005524 ... O53343 29350349
    4715 5yk4:A (2.97) BS01 ADP ? GO:0003677 ... Q5F5J4 29182773
    4716 5yk4:B (2.97) BS01 ADP ? GO:0003677 ... Q5F5J4 29182773
    4717 5yu8:A (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    4718 5yu8:B (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    4719 5yu8:C (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    4720 5yu8:D (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    4721 5yu8:E (3.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 29749375
    4722 5yv5:A (2.1) BS02 ADP ? GO:0005524 ... I6V0C7 30010948
    4723 5yv5:A (2.1) BS03 ADP ? GO:0005524 ... I6V0C7 30010948
    4724 5ywb:A (5.2) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4725 5ywb:B (5.2) BS01 ADP ? GO:0005267 ... Q09427 29594720
    4726 5ywb:B (5.2) BS02 ADP ? GO:0005267 ... Q09427 29594720
    4727 5ywb:C (5.2) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4728 5ywb:D (5.2) BS01 ADP ? GO:0005267 ... Q09427 29594720
    4729 5ywb:D (5.2) BS02 ADP ? GO:0005267 ... Q09427 29594720
    4730 5ywb:E (5.2) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4731 5ywb:F (5.2) BS01 ADP ? GO:0005267 ... Q09427 29594720
    4732 5ywb:F (5.2) BS02 ADP ? GO:0005267 ... Q09427 29594720
    4733 5ywb:G (5.2) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4734 5ywb:H (5.2) BS01 ADP ? GO:0005267 ... Q09427 29594720
    4735 5ywb:H (5.2) BS02 ADP ? GO:0005267 ... Q09427 29594720
    4736 5ywc:A (4.3) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4737 5ywc:A (4.3) BS02 ADP ? GO:0001508 ... Q61743 29594720
    4738 5ywc:B (4.3) BS01 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4739 5ywc:B (4.3) BS02 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4740 5ywc:C (4.3) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4741 5ywc:C (4.3) BS02 ADP ? GO:0001508 ... Q61743 29594720
    4742 5ywc:D (4.3) BS01 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4743 5ywc:D (4.3) BS02 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4744 5ywc:E (4.3) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4745 5ywc:E (4.3) BS02 ADP ? GO:0001508 ... Q61743 29594720
    4746 5ywc:F (4.3) BS01 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4747 5ywc:F (4.3) BS02 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4748 5ywc:G (4.3) BS01 ADP ? GO:0001508 ... Q61743 29594720
    4749 5ywc:G (4.3) BS02 ADP ? GO:0001508 ... Q61743 29594720
    4750 5ywc:H (4.3) BS01 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4751 5ywc:H (4.3) BS02 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4752 5ywd:B (4.2) BS01 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4753 5ywd:B (4.2) BS02 ADP ? GO:0001508 ... A0A1U7R319 29594720
    4754 5yzg:D (4.1) BS01 ADP 3.6.4.13 GO:0000354 ... O75643 29301961
    4755 5yzg:D (4.1) BS02 ADP 3.6.4.13 GO:0000354 ... O75643 29301961
    4756 5z3o:O (3.62) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    4757 5z3u:O (4.31) BS04 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    4758 5z3v:O (4.22) BS03 ADP 3.6.4.- GO:0005524 ... P22082 30867599
    4759 5zax:A (2.36) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    4760 5zb0:A (1.19) BS02 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    4761 5zb0:B (1.19) BS02 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    4762 5zb4:A (1.92) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    4763 5zb4:B (1.92) BS01 ADP 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    4764 5zi2:B (2.0) BS01 ADP 1.1.1.37 GO:0003729 ... P32419 30279312
    4765 5zk6:A (3.15) BS01 ADP 6.3.2.- GO:0003824 ... P0C0U4 N/A
    4766 5zlp:D (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4767 5zlp:E (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4768 5zlp:H (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4769 5zlp:I (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4770 5zlp:J (2.93) BS01 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4771 5zlp:L (2.93) BS03 ADP 6.3.1.2 GO:0003824 ... P94845 30076387
    4772 5zo7:A (2.6) BS01 ADP ? GO:0003777 ... P52732 31459302
    4773 5zo7:B (2.6) BS01 ADP ? GO:0003777 ... P52732 31459302
    4774 5zo8:A (2.2) BS01 ADP ? GO:0003777 ... P52732 31459302
    4775 5zo8:B (2.2) BS01 ADP ? GO:0003777 ... P52732 31459302
    4776 5zo9:A (2.7) BS01 ADP ? GO:0003777 ... P52732 31459302
    4777 5zo9:B (2.7) BS01 ADP ? GO:0003777 ... P52732 31459302
    4778 5zq6:A (3.009) BS01 ADP ? GO:0106274 ... Q6BBR6 29731171
    4779 5zq6:C (3.009) BS01 ADP ? GO:0106274 ... Q6BBR6 29731171
    4780 5zu9:A (1.499) BS01 ADP 3.4.19.12 N/A T2B9G2 N/A
    4781 5zui:A (2.701) BS01 ADP ? GO:0005524 ... G0S4G4 33651974
    4782 5zui:A (2.701) BS02 ADP ? GO:0005524 ... G0S4G4 33651974
    4783 5zwa:A (2.45) BS01 ADP 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    4784 5zwb:A (2.2) BS01 ADP 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912 MOAD: Kd=0.000000064M
    4785 5zxm:A (1.938) BS01 ADP 5.6.2.2 GO:0003677 ... A0A3R0U328 33548211
    4786 5zxm:B (1.938) BS01 ADP 5.6.2.2 GO:0003677 ... A0A3R0U328 33548211
    4787 5zz6:C (2.2) BS01 ADP ? GO:0003677 ... Q9WY16 30185822
    4788 6a1z:A (2.58) BS01 ADP ? GO:0003777 ... A0A0G2K8Z9 30463954
    4789 6a20:A (2.4) BS01 ADP ? GO:0003777 ... A0A0G2K8Z9 30463954
    4790 6a8c:A (1.98) BS02 ADP 2.7.1.15 GO:0004747 ... A0A3S7X0F5 31170491
    4791 6a8c:B (1.98) BS02 ADP 2.7.1.15 GO:0004747 ... A0A3S7X0F5 31170491
    4792 6acx:A (3.5) BS01 ADP 3.6.4.- GO:0000716 ... A0R3C5 N/A
    4793 6acx:B (3.5) BS01 ADP 3.6.4.- GO:0000716 ... A0R3C5 N/A
    4794 6adx:A (1.752) BS01 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 30672289
    4795 6ady:A (1.9) BS01 ADP 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 30672289
    4796 6an9:A (1.891) BS01 ADP N/A GO:0006797 ... N/A N/A
    4797 6ap1:A (3.2) BS02 ADP ? GO:0005524 ... P52917
    Q9I747
    29165244
    4798 6ap1:B (3.2) BS02 ADP ? GO:0005524 ... P52917
    Q9I747
    29165244
    4799 6ap1:C (3.2) BS02 ADP ? GO:0005524 ... P52917
    Q9I747
    29165244
    4800 6ap1:D (3.2) BS02 ADP ? GO:0005524 ... P52917
    Q9I747
    29165244

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218