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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 5ftk:C (2.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4002 5ftk:D (2.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4003 5ftk:D (2.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4004 5ftk:E (2.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4005 5ftk:E (2.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4006 5ftk:F (2.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4007 5ftk:F (2.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4008 5ftl:A (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4009 5ftl:A (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4010 5ftl:B (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4011 5ftl:B (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4012 5ftl:C (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4013 5ftl:C (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4014 5ftl:D (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4015 5ftl:D (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4016 5ftl:E (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4017 5ftl:E (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4018 5ftl:F (3.3) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4019 5ftl:F (3.3) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4020 5ftm:A (3.2) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4021 5ftm:B (3.2) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4022 5ftm:C (3.2) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4023 5ftm:D (3.2) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4024 5ftm:E (3.2) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4025 5ftm:F (3.2) BS03 ADP 3.6.4.6 GO:0000502 ... P55072 26822609
    4026 5g1x:A (1.72) BS02 ADP 2.7.11.1 GO:0000212 ... O14965 27837025
    4027 5g3y:A (1.18) BS02 ADP N/A GO:0004017 ... N/A 28008087
    4028 5g3y:A (1.18) BS03 ADP N/A GO:0004017 ... N/A 28008087
    4029 5g40:A (1.69) BS02 ADP N/A GO:0004017 ... N/A 28008087
    4030 5gjq:H (4.35) BS01 ADP ? GO:0000502 ... P35998 27428775
    4031 5gjq:I (4.35) BS01 ADP ? GO:0000502 ... P62191 27428775
    4032 5gjq:I (4.35) BS02 ADP ? GO:0000502 ... P62191 27428775
    4033 5gjq:J (4.35) BS01 ADP ? GO:0000502 ... P62195 27428775
    4034 5gjq:K (4.35) BS01 ADP ? GO:0000502 ... P43686 27428775
    4035 5gjq:L (4.35) BS01 ADP ? GO:0000502 ... P62333 27428775
    4036 5gjq:M (4.35) BS01 ADP ? GO:0000502 ... P17980 27428775
    4037 5gjr:0 (3.5) BS01 ADP ? GO:0000502 ... P17980 27428775
    4038 5gjr:H (3.5) BS01 ADP ? GO:0000502 ... P35998 27428775
    4039 5gjr:I (3.5) BS01 ADP ? GO:0000502 ... P62191 27428775
    4040 5gjr:I (3.5) BS02 ADP ? GO:0000502 ... P62191 27428775
    4041 5gjr:J (3.5) BS01 ADP ? GO:0000502 ... P62195 27428775
    4042 5gjr:K (3.5) BS01 ADP ? GO:0000502 ... P43686 27428775
    4043 5gjr:L (3.5) BS01 ADP ? GO:0000502 ... P62333 27428775
    4044 5gjr:L (3.5) BS02 ADP ? GO:0000502 ... P62333 27428775
    4045 5gjr:M (3.5) BS01 ADP ? GO:0000502 ... P17980 27428775
    4046 5gjr:v (3.5) BS01 ADP ? GO:0000502 ... P35998 27428775
    4047 5gjr:w (3.5) BS01 ADP ? GO:0000502 ... P62191 27428775
    4048 5gjr:w (3.5) BS02 ADP ? GO:0000502 ... P62191 27428775
    4049 5gjr:x (3.5) BS01 ADP ? GO:0000502 ... P62195 27428775
    4050 5gjr:y (3.5) BS01 ADP ? GO:0000502 ... P43686 27428775
    4051 5gjr:z (3.5) BS01 ADP ? GO:0000502 ... P62333 27428775
    4052 5gjr:z (3.5) BS02 ADP ? GO:0000502 ... P62333 27428775
    4053 5gm6:Y (3.5) BS02 ADP 3.6.4.13 GO:0000349 ... P20095 27445306
    4054 5gme:A (1.7) BS02 ADP 4.1.1.33 GO:0004163 ... Q97UL5 28003359
    4055 5gre:B (2.65) BS01 ADP 1.1.1.41 GO:0000287 ... P51553 28098230
    4056 5grf:B (2.5) BS01 ADP 1.1.1.41 GO:0000287 ... P51553 28098230
    4057 5grl:B (2.79) BS01 ADP 1.1.1.41 GO:0000287 ... P51553 28098230
    4058 5gsz:A (2.72) BS01 ADP ? GO:0003777 ... Q99PT9 27690357
    4059 5gza:A (2.0) BS02 ADP 2.7.1.183 GO:0004672 ... Q5U3W1 27879205
    4060 5h53:D (5.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 28067235
    4061 5h53:E (5.2) BS01 ADP 3.6.4.- GO:0000287 ... P68135 28067235
    4062 5h56:A (1.7) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4063 5h56:B (1.7) BS01 ADP 2.7.4.9 GO:0004798 ... O67099 28627020
    4064 5h70:A (2.4) BS01 ADP 2.7.4.9 GO:0004798 ... Q970Q8 N/A
    4065 5h70:B (2.4) BS01 ADP 2.7.4.9 GO:0004798 ... Q970Q8 N/A
    4066 5he9:A (1.9) BS01 ADP ? N/A Q2FXP5 N/A
    4067 5hkk:A (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4068 5hkk:B (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4069 5hkk:C (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4070 5hkk:D (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4071 5hkk:E (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4072 5hkk:F (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4073 5hkk:I (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4074 5hkk:J (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4075 5hkk:K (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4076 5hkk:K (3.0) BS02 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4077 5hkk:L (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4078 5hkk:M (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4079 5hkk:N (3.0) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4080 5hle:A (2.9) BS01 ADP 3.6.4.- GO:0003777 ... P20480
    P56536
    N/A
    4081 5hmp:A (2.397) BS02 ADP ? GO:0003774 ... Q9NQX4 27580874
    4082 5hmp:B (2.397) BS02 ADP ? GO:0003774 ... Q9NQX4 27580874
    4083 5hr5:A (1.82) BS03 ADP 2.7.1.105
    3.1.3.46
    GO:0003824 ... P26285 27802586
    4084 5htx:A (1.492) BS01 ADP 2.7.1.47 GO:0004856 ... Q8L794 27223615
    4085 5hu3:A (1.885) BS02 ADP 2.7.11.17 GO:0004672 ... Q00168 30381148
    4086 5hux:A (1.96) BS01 ADP 2.7.1.47 GO:0004370 ... Q31KC7 27223615
    4087 5i0h:A (1.8) BS01 ADP ? GO:0003774 ... Q9HD67 27580874
    4088 5i0h:B (1.8) BS01 ADP ? GO:0003774 ... Q9HD67 27580874
    4089 5i0i:A (3.15) BS02 ADP ? GO:0003774 ... Q9HD67 27580874
    4090 5i0i:B (3.15) BS02 ADP ? GO:0003774 ... Q9HD67 27580874
    4091 5idj:A (3.02) BS01 ADP 2.7.13.3 GO:0000155 ... Q9X688 27652341
    4092 5ifs:B (2.46) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 27762274
    4093 5ifs:D (2.46) BS01 ADP 3.6.4.6 GO:0005524 ... P55072 27762274
    4094 5ifw:B (3.4) BS01 ADP 3.6.4.6 GO:0000502 ... P55072 27762274
    4095 5ifw:B (3.4) BS02 ADP 3.6.4.6 GO:0000502 ... P55072 27762274
    4096 5ihp:A (1.85) BS01 ADP ? GO:0000166 ... A0QTQ5 N/A
    4097 5ihp:B (1.85) BS01 ADP ? GO:0000166 ... A0QTQ5 N/A
    4098 5ik2:A (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4099 5ik2:B (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4100 5ik2:C (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4101 5ik2:C (2.6) BS02 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4102 5ik2:D (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4103 5ik2:E (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4104 5ik2:F (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4105 5ik2:I (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4106 5ik2:J (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4107 5ik2:K (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4108 5ik2:K (2.6) BS02 ADP 7.1.2.2 GO:0005524 ... F5LA74 27621435
    4109 5ik2:L (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4110 5ik2:M (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4111 5ik2:N (2.6) BS01 ADP 7.1.2.2 GO:0005524 ... F5LA72 27621435
    4112 5irl:A (3.09) BS01 ADP ? N/A G1T469 27283905
    4113 5irm:A (3.31) BS01 ADP ? N/A G1T469 27283905
    4114 5irm:C (3.31) BS01 ADP ? N/A G1T469 27283905
    4115 5irn:A (2.34) BS01 ADP ? N/A G1T469 27283905
    4116 5iz4:A (1.75) BS01 ADP 1.1.1.100 GO:0000166 ... Q13GL4 N/A
    4117 5j7i:C (4.0) BS01 ADP N/A GO:0016491 ... N/A 27571338
    4118 5j7i:D (4.0) BS01 ADP N/A GO:0016491 ... N/A 27571338
    4119 5j99:A (1.7) BS01 ADP 2.7.3.3 GO:0003824 ... P51541 27594681
    4120 5j9a:A (1.997) BS02 ADP 2.7.3.3 GO:0003824 ... P51541 27594681
    4121 5jaj:A (1.5) BS04 ADP 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    4122 5jb2:A (2.2) BS04 ADP 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    4123 5jbg:A (2.0) BS03 ADP 3.6.4.13 GO:0003677 ... G0YYQ5 27203181
    4124 5jc3:A (2.6) BS03 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4125 5jc3:B (2.6) BS03 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4126 5jc7:A (2.75) BS04 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4127 5jc7:B (2.75) BS04 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4128 5jcf:A (2.6) BS03 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4129 5jcf:B (2.6) BS03 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4130 5jch:A (2.95) BS04 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4131 5jch:B (2.95) BS04 ADP 3.6.4.13 GO:0003677 ... D9N195 27203181
    4132 5ji2:E (3.307) BS01 ADP ? GO:0005524 ... P0A6H6 27667691
    4133 5ji2:F (3.307) BS01 ADP ? GO:0005524 ... P0A6H6 27667691
    4134 5jic:A (1.4) BS01 ADP 2.7.1.33 GO:0004594 ... Q2FWC7 27759386
    4135 5jio:A (1.711) BS01 ADP 2.4.1.347 GO:0000166 ... G7CGT2 31772052
    4136 5jji:A (2.601) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4137 5jji:A (2.601) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4138 5jji:B (2.601) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4139 5jji:B (2.601) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4140 5jji:C (2.601) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4141 5jji:C (2.601) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4142 5jji:D (2.601) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4143 5jji:D (2.601) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4144 5jji:E (2.601) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4145 5jji:F (2.601) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4146 5jjk:A (3.15) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4147 5jjk:A (3.15) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4148 5jjk:B (3.15) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4149 5jjk:B (3.15) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4150 5jjk:C (3.15) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4151 5jjk:D (3.15) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4152 5jjk:E (3.15) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4153 5jjk:F (3.15) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4154 5jjl:A (3.2) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4155 5jjl:A (3.2) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4156 5jjl:B (3.2) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4157 5jjl:B (3.2) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4158 5jjl:C (3.2) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4159 5jjl:C (3.2) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4160 5jjl:D (3.2) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4161 5jjl:D (3.2) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4162 5jjl:F (3.2) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 27856760
    4163 5jlf:A (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    4164 5jlf:B (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    4165 5jlf:C (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    4166 5jlf:D (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    4167 5jlf:E (3.6) BS01 ADP 3.6.4.- GO:0000287 ... P68135 27324845
    4168 5jlh:A (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    4169 5jlh:B (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    4170 5jlh:C (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    4171 5jlh:D (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    4172 5jlh:E (3.9) BS01 ADP 3.6.4.- GO:0001525 ... P63261 27324845
    4173 5jqw:A (2.06) BS01 ADP 6.3.4.18 GO:0004638 ... Q5NGE8 N/A
    4174 5jr7:A (3.56) BS01 ADP 2.7.11.11 GO:0000122 ... P05132 27825928
    4175 5jr7:C (3.56) BS01 ADP 2.7.11.11 GO:0000122 ... P05132 27825928
    4176 5jrj:A (1.7) BS01 ADP ? GO:0003677 ... D8IYL4 27447485
    4177 5jwo:A (1.8) BS01 ADP 2.7.11.1
    3.6.4.-
    GO:0005524 ... Q79V60 28302851
    4178 5jwq:A (3.871) BS01 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79V60 28302851
    4179 5jwq:C (3.871) BS01 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79V60 28302851
    4180 5jwq:C (3.871) BS02 ADP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79V60 28302851
    4181 5jyg:A (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4182 5jyg:B (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4183 5jyg:C (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4184 5jyg:D (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4185 5jyg:E (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4186 5jyg:F (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4187 5jyg:G (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4188 5jyg:H (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4189 5jyg:I (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4190 5jyg:J (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4191 5jyg:K (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4192 5jyg:L (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4193 5jyg:M (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4194 5jyg:N (6.5) BS01 ADP 3.6.1.- GO:0005524 ... Q2W8Q6 27391173
    4195 5jzv:A (2.07) BS01 ADP 2.7.4.3 GO:0004017 ... Q9Y3D8 27477389
    4196 5k25:C (3.05) BS01 ADP ? GO:0010960 ... Q8NE01 28246390
    4197 5k2m:A (2.18) BS01 ADP ? GO:0003824 ... Q5JFW0 27566549
    4198 5k2m:B (2.18) BS01 ADP ? GO:0003824 ... Q5JFW0 27566549
    4199 5k2m:C (2.18) BS01 ADP ? GO:0003824 ... Q5JFW0 27566549
    4200 5k2m:D (2.18) BS01 ADP ? GO:0003824 ... Q5JFW0 27566549

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218