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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 3uk6:D (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2602 3uk6:E (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2603 3uk6:F (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2604 3uk6:G (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2605 3uk6:H (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2606 3uk6:I (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2607 3uk6:J (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2608 3uk6:K (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2609 3uk6:L (2.95) BS01 ADP 3.6.4.12 GO:0005524 ... Q9Y230 22748767
    2610 3ukd:A (1.9) BS01 ADP 2.7.4.14 GO:0000287 ... P20425 9280438
    2611 3umm:A (3.2) BS02 ADP 6.3.5.3 GO:0004642 ... P74881 22683785
    2612 3ung:C (2.31) BS04 ADP ? N/A Q8U1S6 22405013
    2613 3uqd:B (2.14) BS02 ADP 2.7.1.11 GO:0000287 ... P06999 30996866
    2614 3uqd:C (2.14) BS05 ADP 2.7.1.11 GO:0000287 ... P06999 30996866
    2615 3ux8:A (2.1) BS02 ADP ? GO:0003677 ... A0A0E0TG05 22307053
    2616 3v4r:A (3.25) BS02 ADP 3.1.21.5 GO:0003677 ... P37954 22753105
    2617 3v4r:B (3.25) BS02 ADP 3.1.21.5 GO:0003677 ... P37954 22753105
    2618 3v4s:A (2.02) BS01 ADP N/A GO:0004638 ... N/A 25372694
    2619 3vad:A (2.602) BS01 ADP 2.7.11.1
    2.7.11.4
    GO:0004672 ... Q00972 N/A
    2620 3vet:A (2.2) BS01 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2621 3vet:A (2.2) BS03 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2622 3vew:A (2.352) BS01 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2623 3vez:A (2.4) BS02 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2624 3vf2:A (2.9) BS03 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2625 3vf4:A (2.4) BS02 ADP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    2626 3viu:A (2.35) BS01 ADP 6.3.5.3 GO:0000287 ... Q5SMH8 22232163
    2627 3vkg:A (2.81) BS01 ADP ? GO:0005524 ... P34036 22398446
    2628 3vkg:A (2.81) BS02 ADP ? GO:0005524 ... P34036 22398446
    2629 3vkg:A (2.81) BS03 ADP ? GO:0005524 ... P34036 22398446
    2630 3vkg:A (2.81) BS04 ADP ? GO:0005524 ... P34036 22398446
    2631 3vkg:B (2.81) BS01 ADP ? GO:0005524 ... P34036 22398446
    2632 3vkg:B (2.81) BS02 ADP ? GO:0005524 ... P34036 22398446
    2633 3vkg:B (2.81) BS03 ADP ? GO:0005524 ... P34036 22398446
    2634 3vkg:B (2.81) BS04 ADP ? GO:0005524 ... P34036 22398446
    2635 3vkh:A (3.8) BS01 ADP ? GO:0005524 ... P34036 22398446
    2636 3vkh:A (3.8) BS02 ADP ? GO:0005524 ... P34036 22398446
    2637 3vkh:A (3.8) BS03 ADP ? GO:0005524 ... P34036 22398446
    2638 3vkh:A (3.8) BS04 ADP ? GO:0005524 ... P34036 22398446
    2639 3vkh:B (3.8) BS01 ADP ? GO:0005524 ... P34036 22398446
    2640 3vkh:B (3.8) BS02 ADP ? GO:0005524 ... P34036 22398446
    2641 3vkh:B (3.8) BS03 ADP ? GO:0005524 ... P34036 22398446
    2642 3vkh:B (3.8) BS04 ADP ? GO:0005524 ... P34036 22398446
    2643 3vlc:A (4.5) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 22684149
    2644 3vmm:A (2.5) BS03 ADP 6.3.2.49 GO:0003824 ... P39641 22407814
    2645 3vot:A (1.8) BS01 ADP 6.3.2.28 GO:0005524 ... Q65D11 23090402
    2646 3vot:B (1.8) BS01 ADP 6.3.2.28 GO:0005524 ... Q65D11 23090402
    2647 3vpb:A (1.8) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2648 3vpb:B (1.8) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2649 3vpb:C (1.8) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2650 3vpb:D (1.8) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2651 3vpc:A (1.87) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2652 3vpc:B (1.87) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2653 3vpc:C (1.87) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2654 3vpc:D (1.87) BS01 ADP 6.3.2.- GO:0003824 ... Q970U6 23434852
    2655 3vtk:A (3.0) BS01 ADP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    2656 3vuf:A (3.0) BS01 ADP 2.4.1.242 GO:0004373 ... Q0DEV5 22878205
    2657 3vx3:A (2.1) BS01 ADP ? GO:0005524 ... Q5JIH4 23399544 PDBbind: -logKd/Ki=7.82, Kd=15nM
    2658 3vx3:A (2.1) BS02 ADP ? GO:0005524 ... Q5JIH4 23399544 PDBbind: -logKd/Ki=7.82, Kd=15nM
    2659 3vx3:B (2.1) BS01 ADP ? GO:0005524 ... Q5JIH4 23399544 PDBbind: -logKd/Ki=7.82, Kd=15nM
    2660 3vx3:B (2.1) BS02 ADP ? GO:0005524 ... Q5JIH4 23399544 PDBbind: -logKd/Ki=7.82, Kd=15nM
    2661 3vzd:C (2.3) BS02 ADP 2.3.1.-
    2.7.1.91
    GO:0000287 ... Q9NYA1 23602659
    2662 3vzd:E (2.3) BS02 ADP 2.3.1.-
    2.7.1.91
    GO:0000287 ... Q9NYA1 23602659
    2663 3w0o:A (1.5) BS01 ADP 2.7.1.163 GO:0005524 ... P00557 23747390
    2664 3w0p:A (2.0) BS01 ADP 2.7.1.163 GO:0005524 ... P00557 23747390
    2665 3w3a:A (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 23639357
    2666 3w3a:C (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 23639357
    2667 3w3a:E (3.9) BS01 ADP 3.6.3.14 GO:0005515 ... Q56404 23639357
    2668 3w3a:I (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 23639357
    2669 3w3a:K (3.9) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 23639357
    2670 3w3a:M (3.9) BS01 ADP 3.6.3.14 GO:0005515 ... Q56404 23639357
    2671 3wgu:A (2.8) BS03 ADP 7.2.2.13 GO:0000166 ... P05024 N/A
    2672 3wgu:C (2.8) BS03 ADP 7.2.2.13 GO:0000166 ... P05024 N/A
    2673 3wgv:A (2.8) BS03 ADP 7.2.2.13 GO:0000166 ... P05024 N/A
    2674 3wgv:C (2.8) BS03 ADP 7.2.2.13 GO:0000166 ... P05024 N/A
    2675 3wnz:A (1.9) BS01 ADP 6.3.2.49 GO:0003824 ... P39641 24702628
    2676 3wo0:A (2.0) BS01 ADP 6.3.2.49 GO:0003824 ... P39641 24702628
    2677 3wo1:A (2.3) BS01 ADP 6.3.2.49 GO:0003824 ... P39641 24702628
    2678 3wv7:A (1.6) BS01 ADP 2.7.7.- GO:0005524 ... D9PY12 25882909
    2679 3wwm:A (2.8) BS01 ADP 2.7.2.17 GO:0003991 ... O50147 25392000
    2680 3wxl:A (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    2681 3wxl:B (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    2682 3wxl:B (1.9) BS03 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    2683 3wxl:D (1.9) BS02 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    2684 3wxl:D (1.9) BS03 ADP 2.7.1.30 GO:0004370 ... D3KVM3 25315291
    2685 3x2t:A (2.7) BS01 ADP 3.6.4.- GO:0003777 ... P28738 25777528
    2686 3x2t:B (2.7) BS01 ADP 3.6.4.- GO:0003777 ... P28738 25777528
    2687 3zcw:A (1.691) BS01 ADP ? GO:0003777 ... P52732 23305346
    2688 3zd7:A (2.5) BS04 ADP 3.6.4.13 GO:0003676 ... O95786 23897087
    2689 3zeu:B (1.653) BS04 ADP 2.3.1.234 GO:0002949 ... P40731 23471679
    2690 3zeu:E (1.653) BS04 ADP 2.3.1.234 GO:0002949 ... P40731 23471679
    2691 3zia:B (2.5) BS01 ADP ? GO:0005524 ... P07251 23407639
    2692 3zia:C (2.5) BS01 ADP ? GO:0005524 ... P07251 23407639
    2693 3zia:D (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2694 3zia:E (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2695 3zia:F (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2696 3zia:L (2.5) BS01 ADP ? GO:0005524 ... P07251 23407639
    2697 3zia:M (2.5) BS01 ADP ? GO:0005524 ... P07251 23407639
    2698 3zia:N (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2699 3zia:O (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2700 3zia:P (2.5) BS01 ADP 7.1.2.2 GO:0005515 ... P00830 23407639
    2701 3zl8:A (1.65) BS01 ADP 6.3.2.10 GO:0005524 ... Q9WY78 23826965
    2702 3zoz:A (1.95) BS02 ADP 2.7.2.3 GO:0004618 ... P00558 N/A
    2703 3zpz:A (8.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2704 3zpz:B (8.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2705 3zpz:C (8.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2706 3zpz:D (8.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2707 3zpz:E (8.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2708 3zpz:F (8.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2709 3zpz:G (8.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2710 3zq0:A (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2711 3zq0:B (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2712 3zq0:C (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2713 3zq0:D (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2714 3zq0:E (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2715 3zq0:F (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2716 3zq0:G (9.2) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2717 3zq1:A (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2718 3zq1:B (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2719 3zq1:C (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2720 3zq1:D (15.9) BS02 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2721 3zq1:E (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2722 3zq1:F (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2723 3zq1:G (15.9) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 23746846
    2724 3zq6:A (2.107) BS01 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2725 3zq6:A (2.107) BS04 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2726 3zq6:B (2.107) BS01 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2727 3zq6:B (2.107) BS04 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2728 3zq6:C (2.107) BS01 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2729 3zq6:C (2.107) BS03 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2730 3zq6:D (2.107) BS01 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2731 3zq6:D (2.107) BS03 ADP 7.3.2.7 GO:0005524 ... O27555 21658170
    2732 3zs9:A (2.095) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 21866104
    2733 3zs9:A (2.095) BS03 ADP 3.6.-.- GO:0000750 ... Q12154 21866104
    2734 3zs9:B (2.095) BS01 ADP 3.6.-.- GO:0000750 ... Q12154 21866104
    2735 3zs9:B (2.095) BS03 ADP 3.6.-.- GO:0000750 ... Q12154 21866104
    2736 3zuh:A (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2737 3zuh:B (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2738 3zuh:C (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2739 3zuh:D (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2740 3zuh:E (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2741 3zuh:F (21.0) BS02 ADP ? GO:0005524 ... P95648 22048315
    2742 3zvm:A (1.997) BS02 ADP 2.7.1.78
    3.1.3.32
    GO:0006281 ... Q9JLV6 22055185
    2743 3zvm:B (1.997) BS02 ADP 2.7.1.78
    3.1.3.32
    GO:0006281 ... Q9JLV6 22055185
    2744 3zvn:A (2.15) BS05 ADP 2.7.1.78
    3.1.3.32
    GO:0006281 ... Q9JLV6 22055185
    2745 3zzn:A (2.9) BS01 ADP 1.1.1.27 GO:0003824 ... Q5SJA1 22319152
    2746 3zzn:D (2.9) BS01 ADP 1.1.1.27 GO:0003824 ... Q5SJA1 22319152
    2747 4a14:A (1.6) BS01 ADP ? GO:0003777 ... Q2M1P5 22281744
    2748 4a1z:A (2.8) BS01 ADP ? GO:0003777 ... P52732 23875972
    2749 4a1z:B (2.8) BS01 ADP ? GO:0003777 ... P52732 23875972
    2750 4a28:A (2.55) BS01 ADP ? GO:0003777 ... P52732 23875972
    2751 4a28:B (2.55) BS01 ADP ? GO:0003777 ... P52732 23875972
    2752 4a36:A (3.7) BS03 ADP 3.6.4.13 GO:0003676 ... D3TI84 22000019
    2753 4a36:B (3.7) BS04 ADP 3.6.4.13 GO:0003676 ... D3TI84 22000019
    2754 4a50:A (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2755 4a51:A (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2756 4a51:B (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2757 4a51:C (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2758 4a51:D (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2759 4a51:E (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2760 4a51:F (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2761 4a51:G (2.75) BS01 ADP ? GO:0003777 ... P52732 22248262
    2762 4a51:G (2.75) BS02 ADP ? GO:0003777 ... P52732 22248262
    2763 4a5y:A (2.45) BS01 ADP ? GO:0003777 ... P52732 23658017
    2764 4a5y:B (2.45) BS01 ADP ? GO:0003777 ... P52732 23658017
    2765 4a5y:C (2.45) BS01 ADP ? GO:0003777 ... P52732 23658017
    2766 4a7f:A (7.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2767 4a7f:D (7.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2768 4a7f:E (7.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2769 4a7f:F (7.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2770 4a7f:I (7.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2771 4a7h:A (7.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2772 4a7h:D (7.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2773 4a7h:E (7.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2774 4a7h:F (7.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2775 4a7h:G (7.8) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2776 4a7l:A (8.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2777 4a7l:D (8.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2778 4a7l:E (8.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2779 4a7l:F (8.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2780 4a7l:I (8.1) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2781 4a7n:A (8.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2782 4a7n:B (8.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2783 4a7n:C (8.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2784 4a7n:D (8.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2785 4a7n:E (8.9) BS01 ADP 3.6.4.- GO:0000287 ... P68135 22817895
    2786 4ag5:A (2.45) BS02 ADP ? N/A B0KAW2 22745169
    2787 4ag5:B (2.45) BS02 ADP ? N/A B0KAW2 22745169
    2788 4ag5:D (2.45) BS01 ADP ? N/A B0KAW2 22745169
    2789 4ai6:A (3.4) BS02 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2790 4ai6:A (3.4) BS03 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2791 4ai6:B (3.4) BS03 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2792 4ai6:B (3.4) BS04 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2793 4akg:A (3.3) BS02 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2794 4akg:B (3.3) BS02 ADP 2.5.1.18 GO:0004364 ... P08515
    P36022
    22426545
    2795 4am7:A (3.25) BS01 ADP ? N/A Q12386 23213201
    2796 4am7:B (3.25) BS01 ADP ? N/A Q12386 23213201
    2797 4anj:A (2.6) BS01 ADP ? GO:0003674 ... P42212
    Q29122
    22940248
    2798 4ap0:A (2.594) BS01 ADP ? GO:0003777 ... P52732 22993085
    2799 4ap0:A (2.594) BS03 ADP ? GO:0003777 ... P52732 22993085
    2800 4ap0:B (2.594) BS01 ADP ? GO:0003777 ... P52732 22993085

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218