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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 12079 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 3gli:C (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2002 3gli:D (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2003 3gli:G (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2004 3gli:H (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2005 3gli:I (3.5) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 19450514
    2006 3go6:B (1.98) BS01 ADP 2.7.1.15 GO:0004747 ... P71913 N/A
    2007 3gr4:A (1.6) BS03 ADP 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 N/A
    2008 3gu6:A (1.49) BS01 ADP 2.7.11.1 GO:0004672 ... P53355 N/A
    2009 3gu7:A (1.9) BS01 ADP 2.7.11.1 GO:0004672 ... P53355 N/A
    2010 3guh:A (2.79) BS01 ADP 2.4.1.21 GO:0004373 ... P0A6U8 19244233
    2011 3gvi:A (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2012 3gvi:B (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2013 3gvi:C (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2014 3gvi:D (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2015 3gvi:E (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2016 3gvi:F (2.25) BS01 ADP 1.1.1.37 GO:0003824 ... Q2YLR9 N/A
    2017 3h0l:B (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2018 3h0l:E (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2019 3h0l:H (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2020 3h0l:K (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2021 3h0l:N (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2022 3h0l:Q (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2023 3h0l:T (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2024 3h0l:W (2.3) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2025 3h0r:B (3.0) BS02 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2026 3h0r:T (3.0) BS01 ADP 6.3.5.- GO:0003824 ... O66766 19520089
    2027 3h4m:A (3.106) BS01 ADP ? GO:0005524 ... Q58576 19481527
    2028 3h4m:B (3.106) BS01 ADP ? GO:0005524 ... Q58576 19481527
    2029 3h4m:C (3.106) BS01 ADP ? GO:0005524 ... Q58576 19481527
    2030 3h4s:A (2.4) BS01 ADP ? GO:0003777 ... Q9FHN8 19416847
    2031 3hb9:A (2.9) BS01 ADP 6.4.1.1 GO:0003824 ... A0A0H3JRU9 19523900
    2032 3hb9:C (2.9) BS01 ADP 6.4.1.1 GO:0003824 ... A0A0H3JRU9 19523900
    2033 3hbl:C (2.71) BS01 ADP 6.4.1.1 GO:0003824 ... A0A0H3JRU9 19523900
    2034 3hfw:A (1.92) BS01 ADP 3.2.2.19 GO:0000287 ... P54922 N/A
    2035 3hjn:A (2.1) BS01 ADP 2.7.4.9 GO:0004798 ... Q9X0I3 N/A
    2036 3hjn:B (2.1) BS01 ADP 2.7.4.9 GO:0004798 ... Q9X0I3 N/A
    2037 3hp1:A (2.31) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 19159229
    2038 3hsc:A (1.93) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 2143562
    2039 3hws:A (3.25) BS01 ADP ? GO:0005524 ... P0A6H1 19914167
    2040 3hws:B (3.25) BS01 ADP ? GO:0005524 ... P0A6H1 19914167
    2041 3hws:D (3.25) BS01 ADP ? GO:0005524 ... P0A6H1 19914167
    2042 3hws:E (3.25) BS01 ADP ? GO:0005524 ... P0A6H1 19914167
    2043 3hy6:A (2.1) BS06 ADP 6.3.3.2 GO:0005515 ... P49914 19738041
    2044 3hyo:A (1.85) BS01 ADP 2.7.1.35 GO:0005524 ... F9UM74 N/A
    2045 3hz6:A (1.65) BS01 ADP 2.7.1.17 GO:0000166 ... Q7NWW7 N/A
    2046 3i0o:A (2.4) BS01 ADP ? GO:0000166 ... O06916 20089863
    2047 3i12:A (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    2048 3i12:B (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    2049 3i12:C (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    2050 3i12:D (2.2) BS01 ADP 6.3.2.4 GO:0003824 ... P0A1F0 N/A
    2051 3i33:A (1.3) BS01 ADP ? GO:0005524 ... P54652 20072699
    2052 3i5f:A (3.1) BS02 ADP ? GO:0003774 ... O44934 17502101
    2053 3i61:A (2.1) BS02 ADP 3.6.4.13 GO:0003676 ... P15424 19748356
    2054 3i62:A (1.95) BS02 ADP 3.6.4.13 GO:0003676 ... P15424 19748356
    2055 3i73:A (2.4) BS01 ADP 3.1.-.-
    7.1.2.2
    GO:0005524 ... O57728 19944110 MOAD: Kd=3.23uM
    PDBbind: -logKd/Ki=5.49, Kd=3.23uM
    2056 3ibg:A (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2057 3ibg:B (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2058 3ibg:C (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2059 3ibg:D (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2060 3ibg:E (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2061 3ibg:F (3.2) BS01 ADP 3.6.-.- GO:0000750 ... Q4WY07 19706470
    2062 3ice:A (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2063 3ice:B (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2064 3ice:B (2.8) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2065 3ice:C (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2066 3ice:C (2.8) BS04 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2067 3ice:D (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2068 3ice:D (2.8) BS03 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2069 3ice:E (2.8) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2070 3ice:E (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2071 3ice:F (2.8) BS01 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2072 3ice:F (2.8) BS02 ADP 3.6.4.- GO:0003676 ... P0AG30 19879839
    2073 3ics:B (1.94) BS02 ADP ? GO:0000166 ... A0A6L7H7X4 19725515
    2074 3ict:B (2.1) BS04 ADP ? GO:0000166 ... A0A6L7H7X4 19725515
    2075 3ig8:A (2.69) BS02 ADP 6.3.2.2 GO:0003824 ... P32477 19726687
    2076 3ihl:A (2.8) BS01 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 N/A
    2077 3ihl:B (2.8) BS01 ADP 6.3.4.2 GO:0003883 ... Q9NRF8 N/A
    2078 3iij:A (1.76) BS01 ADP 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    2079 3iil:A (2.0) BS01 ADP 2.7.4.3 GO:0004017 ... Q9Y3D8 22038794
    2080 3in1:A (2.15) BS01 ADP 2.7.1.- GO:0005829 ... P77493 N/A
    2081 3in1:B (2.15) BS01 ADP 2.7.1.- GO:0005829 ... P77493 N/A
    2082 3io3:A (1.8) BS01 ADP 3.6.-.- GO:0005524 ... Q6BSM0 19956640
    2083 3ipx:A (2.0) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 19836232
    2084 3iqx:A (3.5) BS01 ADP ? GO:0005524 ... G0SFE0 19948960
    2085 3iqx:A (3.5) BS03 ADP ? GO:0005524 ... G0SFE0 19948960
    2086 3iqx:B (3.5) BS01 ADP ? GO:0005524 ... G0SFE0 19948960
    2087 3iqx:B (3.5) BS02 ADP ? GO:0005524 ... G0SFE0 19948960
    2088 3iuc:A (2.4) BS01 ADP 3.6.4.10 GO:0005524 ... P11021 20072699 PDBbind: -logKd/Ki=5.66, Kd=2.17uM
    2089 3iuc:C (2.4) BS01 ADP 3.6.4.10 GO:0005524 ... P11021 20072699
    2090 3j0j:A (9.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 22178924
    2091 3j0j:C (9.7) BS01 ADP 7.1.2.2 GO:0005515 ... Q56403 22178924
    2092 3j15:B (6.6) BS01 ADP N/A GO:0005524 ... N/A 22358840
    2093 3j15:B (6.6) BS02 ADP N/A GO:0005524 ... N/A 22358840
    2094 3j4k:A (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    2095 3j4k:B (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    2096 3j4k:C (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    2097 3j4k:D (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    2098 3j4k:E (8.0) BS01 ADP 3.6.4.- GO:0000287 ... P68135 24021812
    2099 3j82:B (7.7) BS01 ADP 3.6.4.- GO:0000079 ... P60709 25979418
    2100 3j82:C (7.7) BS01 ADP 3.6.4.- GO:0000079 ... P60709 25979418
    2101 3j82:D (7.7) BS01 ADP 3.6.4.- GO:0000079 ... P60709 25979418
    2102 3j8a:A (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25470062
    2103 3j8a:B (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25470062
    2104 3j8a:C (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25470062
    2105 3j8a:D (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25470062
    2106 3j8a:E (3.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25470062
    2107 3j8i:D (4.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25533486
    2108 3j8i:E (4.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25533486
    2109 3j8i:F (4.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25533486
    2110 3j8i:G (4.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25533486
    2111 3j8i:H (4.7) BS01 ADP 3.6.4.- GO:0000287 ... P68135 25533486
    2112 3j95:B (7.6) BS01 ADP 3.6.4.6 GO:0000149 ... P18708 25581794
    2113 3j95:C (7.6) BS01 ADP 3.6.4.6 GO:0000149 ... P18708 25581794
    2114 3j95:D (7.6) BS01 ADP 3.6.4.6 GO:0000149 ... P18708 25581794
    2115 3j95:E (7.6) BS01 ADP 3.6.4.6 GO:0000149 ... P18708 25581794
    2116 3j9k:A (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2117 3j9k:C (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2118 3j9k:E (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2119 3j9k:G (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2120 3j9k:I (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2121 3j9k:K (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2122 3j9k:M (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2123 3j9k:O (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2124 3j9k:Q (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2125 3j9k:S (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2126 3j9k:U (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2127 3j9k:W (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2128 3j9k:Y (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2129 3j9k:a (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2130 3j9k:c (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2131 3j9k:e (4.1) BS01 ADP ? GO:0043531 ... Q7KLI1 25644603
    2132 3ja8:2 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    2133 3ja8:2 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29469 26222030
    2134 3ja8:3 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    2135 3ja8:3 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 26222030
    2136 3ja8:4 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    2137 3ja8:4 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P30665 26222030
    2138 3ja8:5 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    2139 3ja8:5 (3.8) BS02 ADP 3.6.4.12 GO:0000727 ... P29496 26222030
    2140 3ja8:6 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 26222030
    2141 3ja8:7 (3.8) BS01 ADP 3.6.4.12 GO:0000727 ... P38132 26222030
    2142 3jag:jj (3.65) BS04 ADP ? GO:0000054 ... G1SG72 26245381
    2143 3jah:jj (3.45) BS05 ADP ? GO:0000054 ... G1SG72 26245381
    2144 3jai:jj (3.65) BS05 ADP ? GO:0000054 ... G1SG72 26245381
    2145 3jai:jj (3.65) BS06 ADP ? GO:0000054 ... G1SG72 26245381
    2146 3jb9:X (3.6) BS01 ADP ? GO:0000398 ... O94508 26292707
    2147 3jbi:A (8.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2148 3jbi:B (8.5) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2149 3jbj:A (7.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2150 3jbj:B (7.6) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2151 3jbk:A (8.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2152 3jbk:B (8.2) BS02 ADP 3.6.4.- GO:0000287 ... P68135 26493222
    2153 3jbz:A (28.0) BS01 ADP 2.7.11.1 GO:0004674 ... P42345 27097373
    2154 3jq3:A (2.503) BS01 ADP 2.7.3.5 GO:0003824 ... Q8T6T7 21212263
    2155 3jux:A (3.1) BS01 ADP 7.4.2.8 GO:0005524 ... Q9X1R4 19850053
    2156 3jv2:A (2.5) BS02 ADP 7.4.2.8 GO:0005524 ... P28366 19850053
    2157 3jv2:B (2.5) BS02 ADP 7.4.2.8 GO:0005524 ... P28366 19850053
    2158 3jxu:A (2.14) BS01 ADP ? GO:0005524 ... P0DMV8 20072699
    2159 3k0s:A (2.2) BS03 ADP ? GO:0000018 ... P23909 20167596
    2160 3k1j:A (2.0) BS01 ADP ? GO:0000166 ... B6YU74 20834233 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    2161 3k1j:B (2.0) BS01 ADP ? GO:0000166 ... B6YU74 20834233
    2162 3k30:A (2.7) BS03 ADP ? GO:0000166 ... Q6IWJ5 20538584
    2163 3k30:B (2.7) BS03 ADP ? GO:0000166 ... Q6IWJ5 20538584
    2164 3k3b:A (2.4) BS01 ADP ? GO:0003777 ... P52732 19945875
    2165 3k3b:B (2.4) BS01 ADP ? GO:0003777 ... P52732 19945875
    2166 3k5e:A (1.97) BS02 ADP 3.6.4.4 GO:0003777 ... P52732 N/A
    2167 3k5e:B (1.97) BS02 ADP 3.6.4.4 GO:0003777 ... P52732 N/A
    2168 3k5i:A (2.0) BS01 ADP 4.1.1.21 GO:0004638 ... A1CII2 20050602
    2169 3k5i:B (2.0) BS01 ADP 4.1.1.21 GO:0004638 ... A1CII2 20050602
    2170 3k5i:C (2.0) BS01 ADP 4.1.1.21 GO:0004638 ... A1CII2 20050602
    2171 3k5i:D (2.0) BS01 ADP 4.1.1.21 GO:0004638 ... A1CII2 20050602
    2172 3k60:A (2.3) BS01 ADP ? GO:0005524 ... Q8IC05 20635416
    2173 3kal:A (1.9) BS01 ADP 6.3.2.3 GO:0000287 ... Q9M426 19948790
    2174 3kal:B (1.9) BS01 ADP 6.3.2.3 GO:0000287 ... Q9M426 19948790
    2175 3kar:A (2.3) BS01 ADP 5.6.1.4 GO:0003777 ... P17119 9485302
    2176 3kb1:A (2.9) BS01 ADP ? GO:0005524 ... O28015 N/A
    2177 3kb1:B (2.9) BS02 ADP ? GO:0005524 ... O28015 N/A
    2178 3ken:A (2.5) BS01 ADP ? GO:0003777 ... P52732 20299460
    2179 3kfe:A (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2180 3kfe:B (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2181 3kfe:C (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2182 3kfe:D (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2183 3kfe:E (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2184 3kfe:F (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2185 3kfe:G (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2186 3kfe:H (3.5) BS01 ADP ? GO:0005524 ... Q877G8 20573955
    2187 3kfx:A (1.96) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    2188 3kfx:B (1.96) BS01 ADP 2.7.1.113
    2.7.1.74
    2.7.1.76
    GO:0004136 ... P27707 20614893
    2189 3kh5:A (2.1) BS01 ADP 1.1.1.34 N/A Q58622 20382158
    2190 3kh5:A (2.1) BS03 ADP 1.1.1.34 N/A Q58622 20382158
    2191 3kh5:A (2.1) BS04 ADP 1.1.1.34 N/A Q58622 20382158
    2192 3kin:A (3.1) BS01 ADP 3.6.4.- GO:0003777 ... P56536 9428521
    2193 3kin:C (3.1) BS01 ADP 3.6.4.- GO:0003777 ... P56536 9428521
    2194 3kjg:A (2.3) BS01 ADP ? GO:0000166 ... Q3ACS5 20064527
    2195 3kjg:B (2.3) BS01 ADP ? GO:0000166 ... Q3ACS5 20064527
    2196 3kji:A (2.13) BS02 ADP ? GO:0000166 ... Q3ACS5 20064527
    2197 3kji:B (2.13) BS02 ADP ? GO:0000166 ... Q3ACS5 20064527
    2198 3ko1:A (3.7) BS01 ADP ? GO:0005524 ... Q877H2 20947016
    2199 3ko1:B (3.7) BS01 ADP ? GO:0005524 ... Q877H2 20947016
    2200 3ko1:C (3.7) BS01 ADP ? GO:0005524 ... Q877H2 20947016

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218