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BioLiP Library
Download all results in tab-seperated text for 29 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5o9d:A (1.79) BS04 9ON N/A GO:0008270 ... N/A 28963762
    2 5o9d:B (1.79) BS04 9ON N/A GO:0008270 ... N/A 28963762
    3 5o9d:C (1.79) BS04 9ON N/A GO:0008270 ... N/A 28963762
    4 5o9d:D (1.79) BS04 9ON N/A GO:0008270 ... N/A 28963762
    5 5o9f:A (1.64) BS04 9ON N/A GO:0008270 ... N/A 28963762
    6 5o9f:B (1.64) BS04 9ON N/A GO:0008270 ... N/A 28963762
    7 5o9f:D (1.64) BS04 9ON N/A GO:0008270 ... N/A 28963762
    8 5y8g:A (2.01) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    9 5y8g:B (2.01) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    10 5y8h:A (2.1) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    11 5y8h:B (2.1) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    12 5y8i:A (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    13 5y8i:B (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    14 5y8j:A (1.86) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    15 5y8j:B (1.86) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    16 5y8k:A (2.04) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    17 5y8k:B (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    18 5y8l:A (1.85) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    19 5y8l:B (1.85) BS03 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    20 5y8l:B (1.85) BS04 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    21 5y8m:A (2.04) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    22 5y8m:B (2.04) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    23 5y8n:A (2.68) BS03 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    24 5y8o:A (2.05) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    25 5y8o:B (2.05) BS02 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    26 5y8p:A (2.15) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    27 5y8p:B (2.15) BS01 9ON 1.1.1.31 GO:0006574 ... P9WNY5 29959185
    28 6fs3:A (1.75) BS03 9ON 3.1.8.1 GO:0004063 ... P0A434 N/A
    29 6fs3:B (1.75) BS03 9ON 3.1.8.1 GO:0004063 ... P0A434 N/A
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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