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BioLiP
Download all results in tab-seperated text for 44 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5nzw:A (2.7) BS01 9F2 3.5.2.6 N/A Q6PJP8 N/A
    2 5nzx:A (1.47) BS01 9F2 3.5.2.6 N/A Q6PJP8 N/A
    3 6b5y:A (2.75) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    4 6b5y:B (2.75) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    5 6b5y:C (2.75) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    6 6b5y:D (2.75) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    7 6b5y:D (2.75) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    8 6b68:A (2.15) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    9 6b68:B (2.15) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    10 6b68:B (2.15) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    11 6b68:C (2.15) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    12 6b68:D (2.15) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    13 6b68:D (2.15) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    14 6b69:A (2.2) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    15 6b69:B (2.2) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    16 6b69:B (2.2) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    17 6b69:C (2.2) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    18 6b69:D (2.2) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    19 6b69:D (2.2) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    20 6b6a:A (2.298) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    21 6b6a:B (2.298) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    22 6b6a:B (2.298) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    23 6b6a:C (2.298) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    24 6b6a:D (2.298) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    25 6b6a:D (2.298) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    26 6b6c:A (1.9) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    27 6b6d:A (1.8) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    28 6b6e:A (1.901) BS02 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    29 6b6f:A (2.05) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 29848358
    30 6p54:B (1.83) BS02 9F2 3.4.16.4 GO:0008658 ... P08149 31362987
    31 6xqv:A (2.05) BS01 9F2 3.4.16.4 GO:0008658 ... P08149 34529975
    32 6xqv:B (2.05) BS01 9F2 3.4.16.4 GO:0008658 ... P08149 34529975
    33 6xqv:B (2.05) BS02 9F2 3.4.16.4 GO:0008658 ... P08149 34529975
    34 7apv:A (1.95) BS01 9F2 3.1.-.- N/A Q96SD1 34387696
    35 7k8e:B (2.40006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    36 7k8e:D (2.40006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    37 7k8f:B (2.60003) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    38 7k8f:D (2.60003) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    39 7k8h:A (2.60006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    40 7k8h:B (2.60006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    41 7k8h:C (2.60006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    42 7k8h:D (2.60006) BS01 9F2 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    43 8yxb:A (2.2) BS01 9F2 N/A N/A P02768 39083648
    44 8yxb:B (2.2) BS01 9F2 N/A N/A P02768 39083648
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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