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BioLiP
Download all results in tab-seperated text for 35 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5if4:A (2.392) BS01 6AK ? GO:0042981 ... Q07820 27878989 MOAD: Ki<1nM
    PDBbind: -logKd/Ki=9.00, Ki<1nM
    BindingDB: Ki=<1.000000nM
    2 5if4:B (2.392) BS01 6AK ? GO:0042981 ... Q07820 27878989 MOAD: Ki<1nM
    BindingDB: Ki=<1.000000nM
    3 5ujb:A (2.7) BS01 6AK ? GO:0005615 ... P02768 28428041
    4 5ujb:B (2.7) BS01 6AK ? GO:0005615 ... P02768 28428041
    5 6dm8:A (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190 PDBbind: -logKd/Ki=7.28, Ki=52nM
    6 6dm8:A (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190 PDBbind: -logKd/Ki=7.28, Ki=52nM
    7 6dm8:A (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190 PDBbind: -logKd/Ki=7.28, Ki=52nM
    8 6dm8:A (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190 PDBbind: -logKd/Ki=7.28, Ki=52nM
    9 6dm8:B (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    10 6dm8:B (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    11 6dm8:C (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    12 6dm8:C (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    13 6dm8:C (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    14 6dm8:C (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    15 6dm8:C (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    16 6dm8:D (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    17 6dm8:D (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    18 6dm8:D (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    19 6dm8:D (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    20 6dm8:E (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    21 6dm8:E (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    22 6dm8:F (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    23 6dm8:F (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    24 6dm8:F (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    25 6dm8:F (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    26 6dm8:G (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    27 6dm8:G (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    28 6dm8:G (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    29 6dm8:G (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    30 6dm8:G (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    31 6dm8:H (2.7) BS03 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    32 6dm8:H (2.7) BS04 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    33 6dm8:H (2.7) BS05 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    34 6dm8:H (2.7) BS06 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    35 6dm8:H (2.7) BS07 6AK ? GO:0005515 ... P0AEX9
    P97287    		 30011190
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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