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BioLiP
Download all results in tab-seperated text for 72 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1pvy:A (1.7) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 12904291
    2 1pvy:B (1.7) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 12904291
    3 1snn:A (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    4 1snn:B (1.55) BS01 5RP 4.1.99.12 GO:0000287 ... Q60364 15213409
    5 1tku:A (1.66) BS01 5RP 4.1.99.12 GO:0003824 ... Q5A3V6 15328619
    6 1tku:B (1.66) BS01 5RP 4.1.99.12 GO:0003824 ... Q5A3V6 15328619
    7 1uj5:A (2.0) BS01 5RP 5.3.1.6 GO:0004751 ... Q72J47 13679361 MOAD: Ki=0.89mM
    PDBbind: -logKd/Ki=3.05, Ki=0.89mM
    8 1xbv:A (1.66) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    9 1xbv:B (1.66) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    10 1xbx:B (1.81) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    11 1xby:A (1.58) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    12 1xby:B (1.58) BS01 5RP 4.1.1.85 GO:0000287 ... P39304 15697207
    13 2iss:A (2.9) BS01 5RP 4.3.3.6 GO:0006520 ... Q9WYU4 17144654
    14 2iss:B (2.9) BS01 5RP 4.3.3.6 GO:0006520 ... Q9WYU4 17144654
    15 2iss:C (2.9) BS01 5RP 4.3.3.6 GO:0006520 ... Q9WYU4 17144654
    16 2iyp:A (2.79) BS02 5RP 1.1.1.44 GO:0004616 ... P96789 17222187
    17 2iyp:B (2.79) BS01 5RP 1.1.1.44 GO:0004616 ... P96789 17222187
    18 2riu:A (1.7) BS01 5RP 4.1.99.12 GO:0003824 ... Q5A3V6 18219123
    19 2vvp:A (1.65) BS02 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    20 2vvp:A (1.65) BS04 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    21 2vvp:B (1.65) BS02 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    22 2vvp:B (1.65) BS04 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    23 2vvp:C (1.65) BS02 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    24 2vvp:C (1.65) BS04 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    25 2vvp:D (1.65) BS02 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    26 2vvp:D (1.65) BS04 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    27 2vvp:E (1.65) BS02 5RP 5.3.1.6 GO:0004751 ... P9WKD7 18640127
    28 3enw:A (2.0) BS01 5RP 5.3.1.6 GO:0004751 ... Q7MHL9 19214439
    29 3enw:B (2.0) BS01 5RP 5.3.1.6 GO:0004751 ... Q7MHL9 19214439
    30 3exs:A (2.5) BS01 5RP 4.1.1.85 GO:0004590 ... Q93DA8 19222992
    31 3exs:D (2.5) BS01 5RP 4.1.1.85 GO:0004590 ... Q93DA8 19222992
    32 3gnd:A (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    33 3gnd:B (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    34 3gnd:C (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    35 3gnd:D (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    36 3gnd:E (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    37 3gnd:F (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    38 3gnd:G (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    39 3gnd:H (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    40 3gnd:I (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    41 3gnd:J (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    42 3gnd:K (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    43 3gnd:L (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    44 3gnd:M (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    45 3gnd:N (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    46 3gnd:O (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    47 3gnd:P (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    48 3gnd:Q (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    49 3gnd:R (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    50 3gnd:S (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    51 3gnd:T (2.9) BS01 5RP 2.3.1.245 GO:0003824 ... P76143 19714241
    52 3hhe:A (2.3) BS01 5RP 5.3.1.6 GO:0004751 ... Q6G3V6 N/A
    53 3hhe:B (2.3) BS01 5RP 5.3.1.6 GO:0004751 ... Q6G3V6 N/A
    54 3ovq:A (1.999) BS02 5RP 5.1.3.1 GO:0004750 ... Q96AT9 20923965
    55 3ovq:B (1.999) BS02 5RP 5.1.3.1 GO:0004750 ... Q96AT9 20923965
    56 4ex9:A (3.15) BS01 5RP ? GO:0001522 ... B6SEG5 23297194
    57 4m8l:A (2.37) BS01 5RP 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    58 4m8l:B (2.37) BS01 5RP 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    59 4m8l:C (2.37) BS01 5RP 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    60 4m8l:D (2.37) BS02 5RP 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    61 4p77:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    62 4p77:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    63 4p8e:A (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    64 4p8e:B (2.04) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 25792735
    65 5lns:A (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    66 5lns:B (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    67 5lns:C (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    68 5lns:D (1.91) BS01 5RP 4.3.3.6 GO:0005515 ... Q8L940 28092359
    69 6mc0:B (2.0) BS01 5RP 5.3.1.6 GO:0004751 ... Q5ZZB7 N/A
    70 6mu0:A (1.1) BS01 5RP 5.3.1.6 GO:0004751 ... P47636 N/A
    71 7uf0:A (1.8) BS01 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    72 7uf4:A (2.2) BS02 5RP 4.1.99.12 GO:0000287 ... Q9KKP2 35802469
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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