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BioLiP
Download all results in tab-seperated text for 33 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d7r:A (2.0) BS02 5PA 4.1.1.64 GO:0008453 ... P16932 10556038
    2 1j0b:A (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    3 1j0b:B (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    4 1j0b:C (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    5 1j0b:D (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    6 1j0b:E (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    7 1j0b:F (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    8 1j0b:G (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    9 1j0b:H (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    10 1j0b:I (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    11 1j0b:J (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    12 1j0b:K (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    13 1j0b:L (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    14 1j0b:M (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    15 1j0b:N (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    16 1j0b:O (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    17 1j0b:P (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    18 1j0b:Q (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    19 1j0b:R (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    20 1j0b:S (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    21 1j0b:T (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    22 1j0b:U (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    23 1j0b:V (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    24 1j0b:W (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    25 1j0b:X (2.7) BS01 5PA 3.5.99.7 GO:0003824 ... O57809 15328614
    26 1j0d:A (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    27 1j0d:B (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    28 1j0d:C (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    29 1j0d:D (2.2) BS01 5PA 3.5.99.7 GO:0008660 ... Q7M523 12882962
    30 4d96:A (2.09) BS01 5PA 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    31 4d96:B (2.09) BS01 5PA 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    32 4d96:C (2.09) BS01 5PA 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    33 4d96:D (2.09) BS01 5PA 4.4.1.15 GO:0003824 ... Q8ZNT7 22574144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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