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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2xan:A (2.2) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 20453199
    2 2xan:B (2.2) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 20453199
    3 2xao:A (2.9) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 20453199
    4 2xao:B (2.9) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 20453199
    5 3udt:A (3.1) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 22362712
    6 3udt:B (3.1) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 22362712
    7 4o4e:A (1.9) BS01 5MY 2.7.-.- GO:0000828 ... N9UNA8 24956979
    8 5mw8:A (2.4) BS02 5MY 2.7.1.158 GO:0005524 ... Q6P1C1 28450399
    9 5mwl:A (3.2) BS02 5MY 2.7.1.158 GO:0005524 ... Q6P1C1 28450399
    10 6fl3:A (2.36) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    11 6fl3:B (2.36) BS01 5MY 2.7.1.158 GO:0005524 ... Q93YN9 30160967
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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