Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5dnx:A (1.8) BS02 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    2 5dnx:A (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    3 5dnx:B (1.8) BS01 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    4 5dnx:B (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    5 5dnx:C (1.8) BS01 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    6 5dnx:C (1.8) BS03 5LD 4.2.1.19 GO:0000105 ... P58880 27717128
    7 5ekw:A (1.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 27717128
    8 5elw:A (1.4) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 27717128 MOAD: Ki=15nM
    PDBbind: -logKd/Ki=7.85, Ki=14nM
    9 6ezj:A (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    10 6ezj:A (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    11 6ezj:B (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    12 6ezj:B (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    13 6ezj:C (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    14 6ezj:C (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    15 6ezj:D (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    16 6ezj:D (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    17 6ezj:E (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    18 6ezj:E (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    19 6ezj:F (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    20 6ezj:F (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    21 6ezj:G (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    22 6ezj:G (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    23 6ezj:H (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    24 6ezj:H (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    25 6ezj:I (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    26 6ezj:I (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    27 6ezj:J (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    28 6ezj:J (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    29 6ezj:K (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    30 6ezj:K (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    31 6ezj:L (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    32 6ezj:L (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    33 6ezj:M (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    34 6ezj:M (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    35 6ezj:N (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    36 6ezj:N (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    37 6ezj:O (3.1) BS02 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    38 6ezj:O (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    39 6ezj:P (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    40 6ezj:P (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    41 6ezj:Q (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    42 6ezj:Q (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    43 6ezj:R (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    44 6ezj:R (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    45 6ezj:S (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    46 6ezj:S (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    47 6ezj:T (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    48 6ezj:T (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    49 6ezj:U (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    50 6ezj:U (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    51 6ezj:V (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    52 6ezj:V (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    53 6ezj:W (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    54 6ezj:W (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    55 6ezj:X (3.1) BS01 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    56 6ezj:X (3.1) BS04 5LD 4.2.1.19 GO:0000105 ... O23346 29434040
    57 6ezm:A (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    58 6ezm:A (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    59 6ezm:A (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    60 6ezm:B (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    61 6ezm:B (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    62 6ezm:B (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    63 6ezm:C (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    64 6ezm:C (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    65 6ezm:C (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    66 6ezm:D (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    67 6ezm:D (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    68 6ezm:D (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    69 6ezm:E (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    70 6ezm:E (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    71 6ezm:E (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    72 6ezm:F (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    73 6ezm:F (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    74 6ezm:F (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    75 6ezm:G (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    76 6ezm:G (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    77 6ezm:G (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    78 6ezm:H (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    79 6ezm:H (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    80 6ezm:H (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    81 6ezm:I (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    82 6ezm:I (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    83 6ezm:I (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    84 6ezm:J (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    85 6ezm:J (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    86 6ezm:J (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    87 6ezm:K (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    88 6ezm:K (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    89 6ezm:K (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    90 6ezm:L (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    91 6ezm:L (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    92 6ezm:L (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    93 6ezm:M (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    94 6ezm:M (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    95 6ezm:M (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    96 6ezm:N (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    97 6ezm:N (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    98 6ezm:N (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    99 6ezm:O (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    100 6ezm:O (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    101 6ezm:O (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    102 6ezm:P (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    103 6ezm:P (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    104 6ezm:P (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    105 6ezm:Q (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    106 6ezm:Q (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    107 6ezm:Q (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    108 6ezm:R (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    109 6ezm:R (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    110 6ezm:R (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    111 6ezm:S (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    112 6ezm:S (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    113 6ezm:S (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    114 6ezm:T (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    115 6ezm:T (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    116 6ezm:T (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    117 6ezm:U (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    118 6ezm:U (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    119 6ezm:U (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    120 6ezm:V (3.2) BS02 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    121 6ezm:V (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    122 6ezm:V (3.2) BS04 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    123 6ezm:W (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    124 6ezm:W (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    125 6ezm:W (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    126 6ezm:X (3.2) BS01 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    127 6ezm:X (3.2) BS03 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    128 6ezm:X (3.2) BS05 5LD 4.2.1.19 GO:0000105 ... P06633 29434040
    129 6fwh:A (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    130 6fwh:A (1.79) BS04 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    131 6fwh:A (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    132 6fwh:B (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    133 6fwh:B (1.79) BS04 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    134 6fwh:B (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    135 6fwh:C (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    136 6fwh:C (1.79) BS04 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    137 6fwh:C (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    138 6fwh:D (1.79) BS02 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    139 6fwh:D (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    140 6fwh:E (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    141 6fwh:E (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    142 6fwh:F (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    143 6fwh:F (1.79) BS04 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    144 6fwh:F (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    145 6fwh:G (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    146 6fwh:G (1.79) BS02 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    147 6fwh:G (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    148 6fwh:H (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    149 6fwh:H (1.79) BS04 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    150 6fwh:H (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    151 6fwh:I (1.79) BS02 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    152 6fwh:I (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    153 6fwh:J (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    154 6fwh:J (1.79) BS03 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    155 6fwh:K (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    156 6fwh:K (1.79) BS02 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    157 6fwh:K (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    158 6fwh:L (1.79) BS01 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    159 6fwh:L (1.79) BS02 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    160 6fwh:L (1.79) BS05 5LD 4.2.1.19 GO:0000105 ... L8H477 29969448
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218